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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFL131
Library SF
(Link to library)
Clone ID SFL131
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16373-1
Original site URL
Representative seq. ID SFL131P
(Link to Original site)
Representative DNA sequence 
>SFL131 (SFL131Q) /CSM/SF/SFL1-B/SFL131Q.Seq.d/
AAAAAAAAGATTTAAAAGATTGGTCAATTGAAGACACAAAAGAATGGATCAATGAATTTA
AAAAAAGAGGACCAAATTTAGAGAATGTGGATTTTTCAAGATTTGAATGGGATGGTGAAC
AATTATCATTATTTTCAATGTCAGATTTTCAAAGAATGTCACCTTATGGAGTTGCACTAT
ACAGAAATTTATATTCACAACCTAAAATATTTCAAACATTAAAAAAAAACAAAAGTATAT
CAAGTAGTGGTGGTGGAGGTGGTAGAGTXXXXXXXXXXTAAAAAGTAGTGGTGGTGGTAG
TGAATATGATACCAAATATAAAAATCAAAAACAACAACATGATGAAAAAGATAATGAAGC
AAGTGGTAGTAGTAACAATAATGATGATGAAAATTTAAATAAAAACCATATTGTAAATAG
TAGTGAATTTACATCACCATCATTTGATTATCATCATTTAGATGAATTAGAAAAGGAAAG
AGAGAAACAAGATTATGAAATCATTTGTAATATTGAACCAATTAAATTCATTGGCCAAAA
TGAAGGATTATTGGGTAAAGATATTATTTTATGTGGTTTTCCAAAGGAACGTATTGATTT
ATCACTATGTCAAGAATTAAAGATAAAGGTTGATACAGTTTATCCATCCATTGAAAAGGG
AACAGTATCATTTTCTGATGATAAACGTTTAGAATGTAACTCTGTACCAGAACCAGGTTA
CTCTGAATCCTCATTAATCTTTTCAAAGTCTGATGCAAAATTTATTGGTTTGGTAAAGTC
ACAATATATGACNAATCCAAATAAATATTATTGTATACCAACTTCAACAATTTTAACTGG
ATTAGTCAAGTTTCAAAAAAGAATTCAATCAAATTTCTTTTAAGAAAANANAAAAAAATA
AA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
KKDLKDWSIEDTKEWINEFKKRGPNLENVDFSRFEWDGEQLSLFSMSDFQRMSPYGVALY
RNLYSQPKIFQTLKKNKSISSSGGGGGR---

---KSSGGGSEYDTKYKNQKQQHDEKDNEASGSSNNNDDENLNKNHIVNSSEFTSPSFDY
HHLDELEKEREKQDYEIICNIEPIKFIGQNEGLLGKDIILCGFPKERIDLSLCQELKIKV
DTVYPSIEKGTVSFSDDKRLECNSVPEPGYSESSLIFSKSDAKFIGLVKSQYMTNPNKYY
CIPTSTILTGLVKFQKRIQSNFF*exxkk*
Translated Amino Acid sequence (All Frames) 
Frame A:
kkki*kigqlktqkngsmnlkkedqi*rmwifqdlngmvnnyhyfqcqifkechlmelhy
teiyihnlkyfkh*kktkvyqvvvvevve---

---*kvvvvvvnmipnikiknnnmmkkimkqvvvvtimmmki*iktil*ivvnlhhhhli
iii*mn*krkernkimksfvilnqlnslakmkdywvkilfyvvfqrnvliyhyvkn*r*r
liqfihplkreqyhflminv*nvtlyqnqvtlnph*sfqslmqnllvw*shni*xiqini
ivyqlqqf*ld*ssfkkefnqisfkkxxknk

Frame B:
kkrfkrlvn*rhkrmdq*i*kkrtkfrecgffki*mgw*tiiiifnvrfsknvtlwscti
qkfiftt*nisnikkkqkyik*wwwrw*s---

---kk*www**i*yqi*kskttt**kr**skw***q****kfk*kpyck***iyitii*l
ssfr*irkgkretrl*nhl*y*tn*ihwpk*riig*ryyfmwfskgty*fitmsrikdkg
*yslsih*kgnsiif***tfrm*lctrtrll*ilinlfkv*ckiywfgkvtiydxsk*il
lytnfnnfnwisqvskknsikfllrkxkki

Frame C:
KKDLKDWSIEDTKEWINEFKKRGPNLENVDFSRFEWDGEQLSLFSMSDFQRMSPYGVALY
RNLYSQPKIFQTLKKNKSISSSGGGGGR---

---KSSGGGSEYDTKYKNQKQQHDEKDNEASGSSNNNDDENLNKNHIVNSSEFTSPSFDY
HHLDELEKEREKQDYEIICNIEPIKFIGQNEGLLGKDIILCGFPKERIDLSLCQELKIKV
DTVYPSIEKGTVSFSDDKRLECNSVPEPGYSESSLIFSKSDAKFIGLVKSQYMTNPNKYY
CIPTSTILTGLVKFQKRIQSNFF*exxkk*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFL131 (SFL131Q) /CSM/SF/SFL1-B/SFL131Q.Seq.d/                       1584   0.0
AFB734 (AFB734Q) /CSM/AF/AFB7-B/AFB734Q.Seq.d/                       1195   0.0
CFG174 (CFG174Q) /CSM/CF/CFG1-D/CFG174Q.Seq.d/                       1181   0.0
SFC560 (SFC560Q) /CSM/SF/SFC5-C/SFC560Q.Seq.d/                       1179   0.0
AFL262 (AFL262Q) /CSM/AF/AFL2-C/AFL262Q.Seq.d/                       1179   0.0
AFK472 (AFK472Q) /CSM/AF/AFK4-C/AFK472Q.Seq.d/                       1179   0.0
SFF437 (SFF437Q) /CSM/SF/SFF4-B/SFF437Q.Seq.d/                       1178   0.0
SFL166 (SFL166Q) /CSM/SF/SFL1-C/SFL166Q.Seq.d/                       1174   0.0
CFB423 (CFB423Q) /CSM/CF/CFB4-A/CFB423Q.Seq.d/                       1174   0.0
SFD336 (SFD336Q) /CSM/SF/SFD3-B/SFD336Q.Seq.d/                       1156   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    38   1e-13  21
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    40   1e-10  24
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    50   6e-10  23
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    36   1e-09  15
AL929352|AL929352.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4.    36   2e-09  17
AE014832|AE014832.1 Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence.    38   1e-08  17
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    40   5e-08  19
AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    42   6e-08  14
AL049184|AL049184.5 Plasmodium falciparum DNA *** SEQUENCING IN PROGRESS *** from  MAL13P3.    40   1e-07  16
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           42   3e-07  24
dna update 2004. 2. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116305_101(AC116305|pid:none) Dictyostelium discoideum chromos...    40   0.079
AB299373_1(AB299373|pid:none) Ciona intestinalis Ci-Elf mRNA for...    36   2.0
AM086846_1(AM086846|pid:none) Senna atomaria chloroplast partial...    35   2.6
AM086900_1(AM086900|pid:none) Senna spectabilis chloroplast part...    35   2.6
BT020861_1(BT020861|pid:none) Bos taurus ets variant gene 6 (TEL...    35   2.6
(P41212) RecName: Full=Transcription factor ETV6; AltName: Full=...    35   3.3
DQ841178_1(DQ841178|pid:none) Homo sapiens B-cell lineage specif...    35   3.3
(Q0VC65) RecName: Full=Transcription factor ETV6;  &BC120331_1(B...    35   3.3
Z35761_1(Z35761|pid:none) Homo sapiens TEL/ABL fusion protien.         35   3.3
(P97360) RecName: Full=Transcription factor ETV6; AltName: Full=...    35   4.4
protein update 2009. 5.28
PSORT 

 psg: 0.75  gvh: 0.26  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for SFL131 is nuc
5' end seq. ID SFL131F
5' end seq. 
>SFL131F.Seq
AAAAAAAAGATTTAAAAGATTGGTCAATTGAAGACACAAAAGAATGGATCAATGAATTTA
AAAAAAGAGGACCAAATTTAGAGAATGTGGATTTTTCAAGATTTGAATGGGATGGTGAAC
AATTATCATTATTTTCAATGTCAGATTTTCAAAGAATGTCACCTTATGGAGTTGCACTAT
ACAGAAATTTATATTCACAACCTAAAATATTTCAAACATTAAAAAAAAACAAAAGTATAT
CAAGTAGTGGTGGTGGAGGTGGTAGAGT----------
Length of 5' end seq. 268
3' end seq. ID SFL131Z
3' end seq. 
>SFL131Z.Seq
----------TAAAAAGTAGTGGTGGTGGTAGTGAATATGATACCAAATATAAAAATCAA
AAACAACAACATGATGAAAAAGATAATGAAGCAAGTGGTAGTAGTAACAATAATGATGAT
GAAAATTTAAATAAAAACCATATTGTAAATAGTAGTGAATTTACATCACCATCATTTGAT
TATCATCATTTAGATGAATTAGAAAAGGAAAGAGAGAAACAAGATTATGAAATCATTTGT
AATATTGAACCAATTAAATTCATTGGCCAAAATGAAGGATTATTGGGTAAAGATATTATT
TTATGTGGTTTTCCAAAGGAACGTATTGATTTATCACTATGTCAAGAATTAAAGATAAAG
GTTGATACAGTTTATCCATCCATTGAAAAGGGAACAGTATCATTTTCTGATGATAAACGT
TTAGAATGTAACTCTGTACCAGAACCAGGTTACTCTGAATCCTCATTAATCTTTTCAAAG
TCTGATGCAAAATTTATTGGTTTGGTAAAGTCACAATATATGACNAATCCAAATAAATAT
TATTGTATACCAACTTCAACAATTTTAACTGGATTAGTCAAGTTTCAAAAAAGAATTCAA
TCAAATTTCTTTTAAGAAAANANAAAAAAATAAA
Length of 3' end seq. 624
Connected seq. ID SFL131P
Connected seq. 
>SFL131P.Seq
AAAAAAAAGATTTAAAAGATTGGTCAATTGAAGACACAAAAGAATGGATCAATGAATTTA
AAAAAAGAGGACCAAATTTAGAGAATGTGGATTTTTCAAGATTTGAATGGGATGGTGAAC
AATTATCATTATTTTCAATGTCAGATTTTCAAAGAATGTCACCTTATGGAGTTGCACTAT
ACAGAAATTTATATTCACAACCTAAAATATTTCAAACATTAAAAAAAAACAAAAGTATAT
CAAGTAGTGGTGGTGGAGGTGGTAGAGT----------TAAAAAGTAGTGGTGGTGGTAG
TGAATATGATACCAAATATAAAAATCAAAAACAACAACATGATGAAAAAGATAATGAAGC
AAGTGGTAGTAGTAACAATAATGATGATGAAAATTTAAATAAAAACCATATTGTAAATAG
TAGTGAATTTACATCACCATCATTTGATTATCATCATTTAGATGAATTAGAAAAGGAAAG
AGAGAAACAAGATTATGAAATCATTTGTAATATTGAACCAATTAAATTCATTGGCCAAAA
TGAAGGATTATTGGGTAAAGATATTATTTTATGTGGTTTTCCAAAGGAACGTATTGATTT
ATCACTATGTCAAGAATTAAAGATAAAGGTTGATACAGTTTATCCATCCATTGAAAAGGG
AACAGTATCATTTTCTGATGATAAACGTTTAGAATGTAACTCTGTACCAGAACCAGGTTA
CTCTGAATCCTCATTAATCTTTTCAAAGTCTGATGCAAAATTTATTGGTTTGGTAAAGTC
ACAATATATGACNAATCCAAATAAATATTATTGTATACCAACTTCAACAATTTTAACTGG
ATTAGTCAAGTTTCAAAAAAGAATTCAATCAAATTTCTTTTAAGAAAANANAAAAAAATA
AA
Length of connected seq. 892
Full length Seq ID -
Full length Seq. -
Length of full length seq. -