SFL103
Library SF
(Link to library)
Clone ID SFL103
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16097-1
Original site URL
Representative seq. ID SFL103Z
(Link to Original site)
Representative DNA sequence
>SFL103 (SFL103Q) /CSM/SF/SFL1-A/SFL103Q.Seq.d/
XXXXXXXXXXAGAGATTTGAAACCACAAAATTTATTATGTGCAGGTGAAGAAGGTGATGA
TATTAGGGTAGCAGATTTTGGATTAAGTAAAATATTTGGAGATGGTGATTATTTAGNAAC
ATGTTGTGGTTCACCAGAATATGTAGCNCCAGAAGTTTTAGAATGTAAACCATACGATAA
AGCATGTGANTTATGGAGTGTTGGTGTTATCACCTATGTTTTATTGACTGGTTGTTTCCC
ATNTTGGGATAAGAATAATGCTGTNCTTTATGAGANAATTAGAAATGTAGACTTATGGTT
GGCCTGAAGGTTNAGNAGTTTCAAATGNAGCCNNAGATTNGGTTTCNCATCTCATNNAAA
GAATCCTNNNNANGATTCGCTTT
sequence update 2001. 6. 1
Translated Amino Acid sequence
---DLKPQNLLCAGEEGDDIRVADFGLSKIFGDGDYLXTCCGSPEYVAPEVLECKPYDKA
CXLWSVGVITYVLLTGCFPXWDKNNAVLYEXIRNVDLWLA*rxxsfkxsxrxgfxshxkn
pxxdsl


Translated Amino Acid sequence (All Frames)
Frame A:
---ei*nhkiyyvqvkkvmilg*qild*vkylemvii*xhvvvhqnm*xqkf*nvnhtik
hvxygvlvlspmfy*lvvshxgirimlxfmrxlem*tygwpegxxvsnxaxdxvshlxxr
ilxxirf


Frame B:
---rfettkfimcr*rr**y*gsrfwik*niwrw*lfxnmlwftricsxrsfrm*tir*s
m*xmecwcyhlcfidwlfpxlg*e*ccxl*xn*kcrlmvglkvxxfqmxpxixfxisxke
sxxxfa


Frame C:
---DLKPQNLLCAGEEGDDIRVADFGLSKIFGDGDYLXTCCGSPEYVAPEVLECKPYDKA
CXLWSVGVITYVLLTGCFPXWDKNNAVLYEXIRNVDLWLA*rxxsfkxsxrxgfxshxkn
pxxdsl


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFL103 (SFL103Q) /CSM/SF/SFL1-A/SFL103Q.Seq.d/ 620 e-177
SSE545 (SSE545Q) /CSM/SS/SSE5-B/SSE545Q.Seq.d/ 583 e-166
SSJ779 (SSJ779Q) /CSM/SS/SSJ7-D/SSJ779Q.Seq.d/ 561 e-159
CFB454 (CFB454Q) /CSM/CF/CFB4-C/CFB454Q.Seq.d/ 533 e-151
SFJ529 (SFJ529Q) /CSM/SF/SFJ5-B/SFJ529Q.Seq.d/ 448 e-125
FC-AW13 (FC-AW13Q) /CSM/FC/FC-AW/FC-AW13Q.Seq.d/ 151 9e-36
AFN323 (AFN323Q) /CSM/AF/AFN3-A/AFN323Q.Seq.d/ 62 6e-09
VFJ716 (VFJ716Q) /CSM/VF/VFJ7-A/VFJ716Q.Seq.d/ 56 4e-07
VFJ379 (VFJ379Q) /CSM/VF/VFJ3-D/VFJ379Q.Seq.d/ 56 4e-07
VFG501 (VFG501Q) /CSM/VF/VFG5-A/VFG501Q.Seq.d/ 56 4e-07

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence. 48 4e-15 3
BH137166|BH137166.1 ENTNR83TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 52 1e-12 3
AZ672839|AZ672839.1 ENTIX25TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 52 2e-12 3
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence. 50 4e-06 3
X80034|X80034.1 C.albicans CDC28 gene. 38 0.001 2
AR037044|AR037044.1 Sequence 3 from patent US 5801015. 38 0.001 2
U40405|U40405.1 Candida albicans cdc2/CDC28/CDK1 homolog mRNA, complete cds. 38 0.001 2
AX488906|AX488906.1 Sequence 6206 from Patent WO02053728. 38 0.001 2
CD574962|CD574962.1 UCRPT01_02bd07_b1 Poncirus trifoliata CTV-challenged cDNA library - AGI Poncirus trifoliata cDNA clone UCRPT01_02bd07, mRNA sequence. 44 0.001 2
CF835953|CF835953.1 UCRCS03_02C23_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02C23, mRNA sequence. 44 0.001 2
dna update 2004. 2. 4
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116982_54(AC116982|pid:none) Dictyostelium discoideum chromoso... 114 8e-25
(Q869W6) RecName: Full=Probable calcium/calmodulin-dependent ser... 108 4e-23
AY606040_1(AY606040|pid:none) Oncorhynchus mykiss calcium/calmod... 103 2e-21
BT045374_1(BT045374|pid:none) Salmo salar clone ssal-rgf-519-258... 103 2e-21
BC074183_1(BC074183|pid:none) Xenopus laevis MGC82022 protein, m... 102 4e-21
BC041721_1(BC041721|pid:none) Xenopus laevis calcium/calmodulin-... 102 5e-21
BC110966_1(BC110966|pid:none) Xenopus laevis calcium/calmodulin-... 102 5e-21
AK052401_1(AK052401|pid:none) Mus musculus 13 days embryo lung c... 101 7e-21
(Q8IU85) RecName: Full=Calcium/calmodulin-dependent protein kina... 101 7e-21
AY335686_1(AY335686|pid:none) Synthetic construct Homo sapiens C... 101 7e-21
protein update 2009. 5.28
PSORT

psg: 0.77 gvh: 0.46 alm: 0.34 top: 0.53 tms: 0.00 mit: 0.07 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
32.0 %: nuclear
8.0 %: vesicles of secretory system
4.0 %: Golgi
4.0 %: mitochondrial

>> prediction for SFL103 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SFL103Z
3' end seq.
>SFL103Z.Seq
----------AGAGATTTGAAACCACAAAATTTATTATGTGCAGGTGAAGAAGGTGATGA
TATTAGGGTAGCAGATTTTGGATTAAGTAAAATATTTGGAGATGGTGATTATTTAGNAAC
ATGTTGTGGTTCACCAGAATATGTAGCNCCAGAAGTTTTAGAATGTAAACCATACGATAA
AGCATGTGANTTATGGAGTGTTGGTGTTATCACCTATGTTTTATTGACTGGTTGTTTCCC
ATNTTGGGATAAGAATAATGCTGTNCTTTATGAGANAATTAGAAATGTAGACTTATGGTT
GGCCTGAAGGTTNAGNAGTTTCAAATGNAGCCNNAGATTNGGTTTCNCATCTCATNNAAA
GAATCCTNNNNANGATTCGCTTT
Length of 3' end seq. 373
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -