SFL102
Library SF
(Link to library)
Clone ID SFL102
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SFL102P
(Link to Original site)
Representative DNA sequence
>SFL102 (SFL102Q) /CSM/SF/SFL1-A/SFL102Q.Seq.d/
CATCTTGGTAAAACCATTAATAATGCTGTAATTACCGTTCCAGCTTATTTNAATGATAGT
CAACGTCAAGCAACCAAAGATGCTGGTACAATTTCAAAATTAAATGTTCAACGTATTATT
AATGAACCAACTGCTGCTGCTATTGCTTATGGTTTAGAAAAGAAAGGTTCTGGTGAAAAG
AATATTTTAATTTTCGATTTAGGTGGTGGTACATTTGATGTTTCTCTCCTTACCATTGAA
GATGGTGTATTTGAAGTTAAAGCCACCGCTGGTGATACTCATTTAGGTGGTGAAGATTTT
GATAATCGTCTCGTTTCTCACTTTGTTGATGAATTTAAACGTAAACATAAAAAAGATATT
ATGGGTAATCAACGTGCTGTTCGTCGTTTAAGAACTGCTTGTGAACGTGCCAAAAGAACT
CTTTCATCATCTGCTCAAGCTTCAATTGAAATTGATTCACTCTTTGAAGGTATTGATTTC
TATACTTCAATTACTAGAGCACGTTTTGAAGAACTCTGTGCTGATCTTTTCXXXXXXXXX
XACCAGCACCAAGAGGTGTACCACAAGTTGAAGTTACATTTGATGTTGATGCAAATGGTA
TCTTAAATGTATCAGCTGAAGATAAATCAACTGGTAACAAACAAAAGATTACAATTACCA
ATGATAAAGGTCGTCTTTCAAAAGAAGAAATTGAGAAAATGGTTGCTGATGCAGAGAAAT
TCAAACAACAAGATGAACAACAAAAAGATCGTGTTGAATCAAAGAATAAATTGGAAAATT
ATGCATTCACTGTTAAAAATTCAATTAAAGATGAAAAAGTTGCAGTCAAAATTTCAGATT
CAGATAAATCAACTATTGAATCTGAAACTGAAAGTGTACTCAAATGGTTAGAATCAAATC
AAACCGCAGAAAAGGATGAATATGAAGATAAGATGAAAGCCTTAGAAGCAGTTGTCAATC
CAATCATGAGTAAACCCTATCAAGAAGGAGGTATGCCACAAGGTGGTGGTATGCCAGGTG
GTATGTCAAATGATTCACCAAAGAGTTCAAACAACAAAGTAGACGAATTAGATTGACGGA
ATTTTTCAGAGGAAAACATCTCTATCAAATAGATTTCTTAAAAAATATAAGTAGTAAATC
AATAAGCTTCTCAT
sequence update 2001. 6. 1
Translated Amino Acid sequence
HLGKTINNAVITVPAYXNDSQRQATKDAGTISKLNVQRIINEPTAAAIAYGLEKKGSGEK
NILIFDLGGGTFDVSLLTIEDGVFEVKATAGDTHLGGEDFDNRLVSHFVDEFKRKHKKDI
MGNQRAVRRLRTACERAKRTLSSSAQASIEIDSLFEGIDFYTSITRARFEELCADLF---

---PAPRGVPQVEVTFDVDANGILNVSAEDKSTGNKQKITITNDKGRLSKEEIEKMVADA
EKFKQQDEQQKDRVESKNKLENYAFTVKNSIKDEKVAVKISDSDKSTIESETESVLKWLE
SNQTAEKDEYEDKMKALEAVVNPIMSKPYQEGGMPQGGGMPGGMSNDSPKSSNNKVDELD
*rnfseenisik*is*ki*vvnq*ash


Translated Amino Acid sequence (All Frames)
Frame A:
HLGKTINNAVITVPAYXNDSQRQATKDAGTISKLNVQRIINEPTAAAIAYGLEKKGSGEK
NILIFDLGGGTFDVSLLTIEDGVFEVKATAGDTHLGGEDFDNRLVSHFVDEFKRKHKKDI
MGNQRAVRRLRTACERAKRTLSSSAQASIEIDSLFEGIDFYTSITRARFEELCADLF---

---tstkrctts*syi*c*ckwylkcis*r*inw*qtkdynyq**rssfkrrn*engc*c
reiqttr*ttkrsc*ike*igklcihc*kfn*r*kscsqnfrfr*iny*i*n*kctqmvr
iksnrrkg*i*r*deslrsscqsnhe*tlsrrryatrwwyarwyvk*ftkefkqqsrrir
lteffrgkhlyqidflknissksisfs

Frame B:
ilvkpliml*lpfqlixmivnvkqpkmlvqfqn*mfnvllmnqllllllmv*krkvlvkr
if*fsi*vvvhlmflslplkmvylklkpplvili*vvkiliivsfltllmnlnvnikkil
wvinvlfvv*ellvnvpkelfhhllklqlklihslkvlisilqllehvlknsvlif---

---PAPRGVPQVEVTFDVDANGILNVSAEDKSTGNKQKITITNDKGRLSKEEIEKMVADA
EKFKQQDEQQKDRVESKNKLENYAFTVKNSIKDEKVAVKISDSDKSTIESETESVLKWLE
SNQTAEKDEYEDKMKALEAVVNPIMSKPYQEGGMPQGGGMPGGMSNDSPKSSNNKVDELD
*rnfseenisik*is*ki*vvnq*ash

Frame C:
sw*nh**ccnyrsslfx**stssnqrcwynfkikcstyy**tncccyclwfrkerfw*ke
yfnfrfrwwyi*cfspyh*rwci*s*shrw*ysfrw*rf**ssrfslc**i*t*t*kryy
g*stccssfkncl*tcqknsfiicssfn*n*ftl*ry*flyfny*stf*rtlc*sf---

---qhqevyhklklhlmlmqmvs*myqlkinqlvtnkrlqlpmikvvfqkkklrkwllmq
rnsnnkmnnkkivlnqrinwkimhsllkiqlkmkklqskfqiqinqllnlklkvysng*n
qikpqkrmnmkir*kp*kqlsiqs*vnpikkevchkvvvcqvvcqmihqrvqttk*tn*i
dgifqrktslsnrflkkyk**inkll

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFL102 (SFL102Q) /CSM/SF/SFL1-A/SFL102Q.Seq.d/ 2222 0.0
CFB593 (CFB593Q) /CSM/CF/CFB5-D/CFB593Q.Seq.d/ 1191 0.0
SHE853 (SHE853Q) /CSM/SH/SHE8-C/SHE853Q.Seq.d/ 1183 0.0
VHM768 (VHM768Q) /CSM/VH/VHM7-C/VHM768Q.Seq.d/ 1178 0.0
VHM556 (VHM556Q) /CSM/VH/VHM5-C/VHM556Q.Seq.d/ 1178 0.0
SFL281 (SFL281Q) /CSM/SF/SFL2-D/SFL281Q.Seq.d/ 1178 0.0
SFF280 (SFF280Q) /CSM/SF/SFF2-D/SFF280Q.Seq.d/ 1178 0.0
CFI158 (CFI158Q) /CSM/CF/CFI1-C/CFI158Q.Seq.d/ 1178 0.0
CFB240 (CFB240Q) /CSM/CF/CFB2-B/CFB240Q.Seq.d/ 1178 0.0
VHN333 (VHN333Q) /CSM/VH/VHN3-B/VHN333Q.Seq.d/ 1176 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X75263|X75263.1 D.discoideum (AX3) mRNA for heat shock cognate protein (hsc70). 1138 0.0 1
L22736|L22736.1 Dictyostelium discoideum heat shock protein (hspB) gene,. 1130 0.0 1
AF025951|AF025951.1 Dictyostelium discoideum heat-shock cognate protein 70 (hsc70) mRNA, complete cds. 190 e-146 7
AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence. 198 e-140 11
AX536934|AX536934.1 Sequence 535 from Patent WO02064766. 98 e-102 8
A58313|A58313.1 Sequence 1 from Patent WO9636707. 98 e-100 8
Z30210|Z30210.1 C.albicans (ATCC 20955) cahsp70 mRNA for heat shock protein 70. 98 e-100 8
AF278536|AF278536.1 Parastrongyloides trichosuri heat shock 70 protein gene, complete cds. 127 1e-86 5
AY120916|AY120916.1 Cryptosporidium sp. 1041 70 kDa heat shock protein gene, partial cds. 94 1e-86 9
AF221530|AF221530.1 Cryptosporidium parvum isolate 359 heat shock protein 70 (HSP70) gene, partial cds. 101 1e-86 9
dna update 2004. 2. 4
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P36415) RecName: Full=Heat shock cognate 70 kDa protein 1; ... 344 3e-93
S37394(S37394) dnaK-type molecular chaperone hsc70 - slime mold ... 342 1e-92
(Q557E0) RecName: Full=Heat shock cognate 70 kDa protein 2; ... 330 6e-89
AF025951_1(AF025951|pid:none) Dictyostelium discoideum heat-shoc... 327 6e-88
(Q54BE0) RecName: Full=Heat shock cognate 70 kDa protein 3; 314 4e-84
EF190213_1(EF190213|pid:none) Dendrolimus punctatus heat shock p... 310 5e-83
EF194276_1(EF194276|pid:none) Dendrolimus superans heat shock pr... 310 5e-83
EF190212_1(EF190212|pid:none) Dendrolimus tabulaeformis heat sho... 310 5e-83
EU679414_1(EU679414|pid:none) Tetranychus cinnabarinus heat shoc... 310 6e-83
EU306518_1(EU306518|pid:none) Mythimna separata Hsp70 mRNA, comp... 310 8e-83
protein update 2009. 5.28
PSORT

psg: 0.88 gvh: 0.32 alm: 0.39 top: 0.43 tms: 0.00 mit: 0.31 mip: 0.00
nuc: 0.14 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
36.0 %: nuclear
8.0 %: plasma membrane
4.0 %: mitochondrial

>> prediction for SFL102 is cyt

5' end seq. ID SFL102F
5' end seq.
>SFL102F.Seq
CATCTTGGTAAAACCATTAATAATGCTGTAATTACCGTTCCAGCTTATTTNAATGATAGT
CAACGTCAAGCAACCAAAGATGCTGGTACAATTTCAAAATTAAATGTTCAACGTATTATT
AATGAACCAACTGCTGCTGCTATTGCTTATGGTTTAGAAAAGAAAGGTTCTGGTGAAAAG
AATATTTTAATTTTCGATTTAGGTGGTGGTACATTTGATGTTTCTCTCCTTACCATTGAA
GATGGTGTATTTGAAGTTAAAGCCACCGCTGGTGATACTCATTTAGGTGGTGAAGATTTT
GATAATCGTCTCGTTTCTCACTTTGTTGATGAATTTAAACGTAAACATAAAAAAGATATT
ATGGGTAATCAACGTGCTGTTCGTCGTTTAAGAACTGCTTGTGAACGTGCCAAAAGAACT
CTTTCATCATCTGCTCAAGCTTCAATTGAAATTGATTCACTCTTTGAAGGTATTGATTTC
TATACTTCAATTACTAGAGCACGTTTTGAAGAACTCTGTGCTGATCTTTTC---------
-
Length of 5' end seq. 531
3' end seq. ID SFL102Z
3' end seq.
>SFL102Z.Seq
----------ACCAGCACCAAGAGGTGTACCACAAGTTGAAGTTACATTTGATGTTGATG
CAAATGGTATCTTAAATGTATCAGCTGAAGATAAATCAACTGGTAACAAACAAAAGATTA
CAATTACCAATGATAAAGGTCGTCTTTCAAAAGAAGAAATTGAGAAAATGGTTGCTGATG
CAGAGAAATTCAAACAACAAGATGAACAACAAAAAGATCGTGTTGAATCAAAGAATAAAT
TGGAAAATTATGCATTCACTGTTAAAAATTCAATTAAAGATGAAAAAGTTGCAGTCAAAA
TTTCAGATTCAGATAAATCAACTATTGAATCTGAAACTGAAAGTGTACTCAAATGGTTAG
AATCAAATCAAACCGCAGAAAAGGATGAATATGAAGATAAGATGAAAGCCTTAGAAGCAG
TTGTCAATCCAATCATGAGTAAACCCTATCAAGAAGGAGGTATGCCACAAGGTGGTGGTA
TGCCAGGTGGTATGTCAAATGATTCACCAAAGAGTTCAAACAACAAAGTAGACGAATTAG
ATTGACGGAATTTTTCAGAGGAAAACATCTCTATCAAATAGATTTCTTAAAAAATATAAG
TAGTAAATCAATAAGCTTCTCAT
Length of 3' end seq. 613
Connected seq. ID SFL102P
Connected seq.
>SFL102P.Seq
CATCTTGGTAAAACCATTAATAATGCTGTAATTACCGTTCCAGCTTATTTNAATGATAGT
CAACGTCAAGCAACCAAAGATGCTGGTACAATTTCAAAATTAAATGTTCAACGTATTATT
AATGAACCAACTGCTGCTGCTATTGCTTATGGTTTAGAAAAGAAAGGTTCTGGTGAAAAG
AATATTTTAATTTTCGATTTAGGTGGTGGTACATTTGATGTTTCTCTCCTTACCATTGAA
GATGGTGTATTTGAAGTTAAAGCCACCGCTGGTGATACTCATTTAGGTGGTGAAGATTTT
GATAATCGTCTCGTTTCTCACTTTGTTGATGAATTTAAACGTAAACATAAAAAAGATATT
ATGGGTAATCAACGTGCTGTTCGTCGTTTAAGAACTGCTTGTGAACGTGCCAAAAGAACT
CTTTCATCATCTGCTCAAGCTTCAATTGAAATTGATTCACTCTTTGAAGGTATTGATTTC
TATACTTCAATTACTAGAGCACGTTTTGAAGAACTCTGTGCTGATCTTTTC---------
-ACCAGCACCAAGAGGTGTACCACAAGTTGAAGTTACATTTGATGTTGATGCAAATGGTA
TCTTAAATGTATCAGCTGAAGATAAATCAACTGGTAACAAACAAAAGATTACAATTACCA
ATGATAAAGGTCGTCTTTCAAAAGAAGAAATTGAGAAAATGGTTGCTGATGCAGAGAAAT
TCAAACAACAAGATGAACAACAAAAAGATCGTGTTGAATCAAAGAATAAATTGGAAAATT
ATGCATTCACTGTTAAAAATTCAATTAAAGATGAAAAAGTTGCAGTCAAAATTTCAGATT
CAGATAAATCAACTATTGAATCTGAAACTGAAAGTGTACTCAAATGGTTAGAATCAAATC
AAACCGCAGAAAAGGATGAATATGAAGATAAGATGAAAGCCTTAGAAGCAGTTGTCAATC
CAATCATGAGTAAACCCTATCAAGAAGGAGGTATGCCACAAGGTGGTGGTATGCCAGGTG
GTATGTCAAATGATTCACCAAAGAGTTCAAACAACAAAGTAGACGAATTAGATTGACGGA
ATTTTTCAGAGGAAAACATCTCTATCAAATAGATTTCTTAAAAAATATAAGTAGTAAATC
AATAAGCTTCTCAT
Length of connected seq. 1144
Full length Seq ID -
Full length Seq. -
Length of full length seq. -