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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFK893
Library SF
(Link to library)
Clone ID SFK893
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15707-1
Original site URL
Representative seq. ID SFK893P
(Link to Original site)
Representative DNA sequence 
>SFK893 (SFK893Q) /CSM/SF/SFK8-D/SFK893Q.Seq.d/
GTCTTCGTGAAGAATATGAAAGAAGATTAAATATGGAACTTCAAAAGAAATTGGAAATCG
AGAGACAAGAACAAGAATTGACCAGAAGAAAACAATTGGAACTTGAACAAATTATGATCC
TCAAGAAACAAGAAGAGGCAGGACTCCGTATTCTTCAAGAACAAAGAGAACATCAAGAAA
AAGTTCGTCTTGCTAAAGAGAAAGAGGAGGAATTAAAAAAAAGAACTATGGAAGAAGAAG
CAAGGAGATCGGCAATTCGTGCACAAGAAATTGCAAGAATGTCTAAACAACAACAACTCG
AAGAGGAAGCCAAACGTTTGGAACAACAAAAGAGACAAGAAGCAGAGTTTATACTTGCAT
TGGAAACCAAATCCAAAGAGGCCAACCTTATGCAACAACAAGCCTTTTTCTTAAAACAAA
AAGAACAAGAGAATCTCCAATTGATTGAAAAACAAAAGAAAGAGATCTATGAAAATCAAA
TTCAAATTGATATTTTGAAACTAAAAGAAATGGAATCTCAAAATCAAAGCAAATCAATGT
TGGAGAAAGCTCAACAAGAAATTCAAGACCTCAAGAAGAGATTGGCTGATGGTXXXXXXX
XXXTCAAAAGTCTAGCTCCATTCAAGTTGGTCCATCCGTTACTTTATCAGCTCATGTAAT
TGGTGATGAAATCTCTGTCACCTATAAAGTAAACTNTGAAACTGGTGCCAACACTAAAGA
TTGGATCGGTATTTATCATCCAATTCAACGTAATAAACATTACATTGAGTCATTGTATGC
TTCAACCTCTGGTACCATCACTTTCAAATCACCAAGAATACCAGGTCTCTATGAGATTCG
TTACTTTTTACATCCAACCAAATATAATGAACAAGCAAAGATNTCATTTGAAATCATTGA
TAACGATAAGATTCAAGTCCTTAGTGAAAGTCAATCTTGTCTTACCCTCTCACCAGATCA
AGAGTTTANAGTTGAATATGTTGTAAACACAACCGCTCCTTCCTCTTCCGATTGGGTTGG
TATTTTCCCTGTTGATGAAATTAATAACAAACATTACATTCATTCCAAATATACAACTTC
CGCTGCATCTGGTGAATTAACCTTTAGAGCTCCACTTAAGACTGGTGATTATGAAGCAAG
ATTCTTTTCTTATGCAAAAGGAAAATATATTGCTCACAAGGTTTCAAATAAATTCTCTGT
GTTTCCNCAATCAAATTAAATAAAATTTAATGTGTGTGTGTTTTAAATAAAATAAAAAAA
AAAATTAAAAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
LREEYERRLNMELQKKLEIERQEQELTRRKQLELEQIMILKKQEEAGLRILQEQREHQEK
VRLAKEKEEELKKRTMEEEARRSAIRAQEIARMSKQQQLEEEAKRLEQQKRQEAEFILAL
ETKSKEANLMQQQAFFLKQKEQENLQLIEKQKKEIYENQIQIDILKLKEMESQNQSKSML
EKAQQEIQDLKKRLADG---

---QKSSSIQVGPSVTLSAHVIGDEISVTYKVNXETGANTKDWIGIYHPIQRNKHYIESL
YASTSGTITFKSPRIPGLYEIRYFLHPTKYNEQAKXSFEIIDNDKIQVLSESQSCLTLSP
DQEFXVEYVVNTTAPSSSDWVGIFPVDEINNKHYIHSKYTTSAASGELTFRAPLKTGDYE
ARFFSYAKGKYIAHKVSNKFSVFPQSN*ikfnvcvf*ik*kkklk
Translated Amino Acid sequence (All Frames) 
Frame A:
vfvknmked*iwnfkrnwksrdknkn*peennwnlnkl*ssrnkkrqdsvffknkenikk
kfvllkrkrrn*kkelwkkkqgdrqfvhkklqeclnnnnskrkpnvwnnkrdkkqslylh
wkpnpkrptlcnnkpfs*nkknkrisn*lknkrkrsmkikfklif*n*kkwnlkikanqc
wrklnkkfktsrrdwlm---

---skv*lhsswsiryfisscnw**nlchl*skl*nwcqh*rldrylssnst**tlh*vi
vcfnlwyhhfqitkntrsl*dsllftsnqi**tskdxi*nh**r*dssp**ksilsyplt
rsrvxs*icckhnrsflfrlgwyfpc**n**qtlhsfqiynfrciw*inl*sst*dw*l*
skilflckrkiycsqgfk*ilcvsxiklnki*cvcvlnkikkkikk

Frame B:
ss*ri*kkikygtskeignretrtridqkktigt*tnydpqetrrgrtpyssrtkrtsrk
sssc*rerggikkknygrrskeignsctrncknv*ttttrrgsqtfgttketrsrvytci
gnqiqrgqpyattslflktkrtrespid*ktkerdl*ksnsn*yfetkrngiskskqinv
gesstrnsrpqeeig*w---

---QKSSSIQVGPSVTLSAHVIGDEISVTYKVNXETGANTKDWIGIYHPIQRNKHYIESL
YASTSGTITFKSPRIPGLYEIRYFLHPTKYNEQAKXSFEIIDNDKIQVLSESQSCLTLSP
DQEFXVEYVVNTTAPSSSDWVGIFPVDEINNKHYIHSKYTTSAASGELTFRAPLKTGDYE
ARFFSYAKGKYIAHKVSNKFSVFPQSN*ikfnvcvf*ik*kkklk

Frame C:
LREEYERRLNMELQKKLEIERQEQELTRRKQLELEQIMILKKQEEAGLRILQEQREHQEK
VRLAKEKEEELKKRTMEEEARRSAIRAQEIARMSKQQQLEEEAKRLEQQKRQEAEFILAL
ETKSKEANLMQQQAFFLKQKEQENLQLIEKQKKEIYENQIQIDILKLKEMESQNQSKSML
EKAQQEIQDLKKRLADG---

---kslapfklvhpllyqlm*lvmkslspik*txklvptlkigsvfiiqfnvinitlshc
mlqplvpslsnhqeyqvsmrfvtfyiqpnimnkqrxhlkslitirfkslvkvnlvlpshq
ikslxlnml*tqpllplpiglvfsllmklitnitfipniqlplhlvn*plelhlrlvimk
qdsflmqkenilltrfqinslcfxnqik*nlmcvcfk*nkkkn*k
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFK893 (SFK893Q) /CSM/SF/SFK8-D/SFK893Q.Seq.d/                       2333   0.0
VSJ758 (VSJ758Q) /CSM/VS/VSJ7-C/VSJ758Q.Seq.d/                       1245   0.0
VFM382 (VFM382Q) /CSM/VF/VFM3-D/VFM382Q.Seq.d/                       1150   0.0
CHL672 (CHL672Q) /CSM/CH/CHL6-C/CHL672Q.Seq.d/                       1057   0.0
AHP888 (AHP888Q) /CSM/AH/AHP8-D/AHP888Q.Seq.d/                       1027   0.0
CHA307 (CHA307Q) /CSM/CH/CHA3-A/CHA307Q.Seq.d/                       1021   0.0
AHQ608 (AHQ608Q) /CSM/AH/AHQ6-A/AHQ608Q.Seq.d/                        920   0.0
SHF121 (SHF121Q) /CSM/SH/SHF1-A/SHF121Q.Seq.d/                        870   0.0
AHQ380 (AHQ380Q) /CSM/AH/AHQ3-D/AHQ380Q.Seq.d/                        821   0.0
CHD844 (CHD844Q) /CSM/CH/CHD8-B/CHD844Q.Seq.d/                        807   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC115592|AC115592.2 Dictyostelium discoideum chromosome 2 map 1-125959 strain AX4, complete sequence.  1245   0.0    2
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    36   6e-04  16
AC116920|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    42   7e-04  14
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    34   8e-04  22
AC104752|AC104752.4 Mus musculus clone RP24-143P3, WORKING DRAFT SEQUENCE, 5 ordered pieces.    42   0.014  10
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    34   0.018  13
AW334929|AW334929.1 S40H12 AGS-1 Pneumocystis carinii f. sp. carinii cDNA 3', mRNA sequence.    52   0.020  1
AW334837|AW334837.1 S39G7 AGS-1 Pneumocystis carinii f. sp. carinii cDNA 3', mRNA sequence.    52   0.020  1
AW334779|AW334779.1 S37H8 AGS-1 Pneumocystis carinii f. sp. carinii cDNA 3', mRNA sequence.    52   0.020  1
AC111948|AC111948.4 Rattus norvegicus clone CH230-212L12, WORKING DRAFT SEQUENCE, 1 ordered piece.    52   0.020  1
dna update 2004. 2. 4
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF360120_1(AF360120|pid:none) Human herpesvirus 8 ORF73 gene, co...    64   8e-09
U93872_83(U93872|pid:none) Kaposi's sarcoma-associated herpesvir...    64   1e-08
AY166677_1(AY166677|pid:none) Plasmodium reichenowi reticulocyte...    62   4e-08
AF305694_1(AF305694|pid:none) Kaposi's sarcoma-associated herpes...    62   5e-08
L04159_1(L04159|pid:none) Plasmodium falciparum unknown gene.          61   9e-08
AF148805_82(AF148805|pid:none) Human herpesvirus 8 type P isolat...    61   9e-08
AE017194_4937(AE017194|pid:none) Bacillus cereus ATCC 10987, com...    61   9e-08
AL844509_349(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    61   9e-08
CP000478_1294(CP000478|pid:none) Syntrophobacter fumaroxidans MP...    61   9e-08
AF312916_1(AF312916|pid:none) Plasmodium falciparum reticulocyte...    61   9e-08
protein update 2009. 5.28
PSORT 

 psg: 0.49  gvh: 0.15  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.06  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for SFK893 is nuc
5' end seq. ID SFK893F
5' end seq. 
>SFK893F.Seq
GTCTTCGTGAAGAATATGAAAGAAGATTAAATATGGAACTTCAAAAGAAATTGGAAATCG
AGAGACAAGAACAAGAATTGACCAGAAGAAAACAATTGGAACTTGAACAAATTATGATCC
TCAAGAAACAAGAAGAGGCAGGACTCCGTATTCTTCAAGAACAAAGAGAACATCAAGAAA
AAGTTCGTCTTGCTAAAGAGAAAGAGGAGGAATTAAAAAAAAGAACTATGGAAGAAGAAG
CAAGGAGATCGGCAATTCGTGCACAAGAAATTGCAAGAATGTCTAAACAACAACAACTCG
AAGAGGAAGCCAAACGTTTGGAACAACAAAAGAGACAAGAAGCAGAGTTTATACTTGCAT
TGGAAACCAAATCCAAAGAGGCCAACCTTATGCAACAACAAGCCTTTTTCTTAAAACAAA
AAGAACAAGAGAATCTCCAATTGATTGAAAAACAAAAGAAAGAGATCTATGAAAATCAAA
TTCAAATTGATATTTTGAAACTAAAAGAAATGGAATCTCAAAATCAAAGCAAATCAATGT
TGGAGAAAGCTCAACAAGAAATTCAAGACCTCAAGAAGAGATTGGCTGATGGT-------
---
Length of 5' end seq. 593
3' end seq. ID SFK893Z
3' end seq. 
>SFK893Z.Seq
----------TCAAAAGTCTAGCTCCATTCAAGTTGGTCCATCCGTTACTTTATCAGCTC
ATGTAATTGGTGATGAAATCTCTGTCACCTATAAAGTAAACTNTGAAACTGGTGCCAACA
CTAAAGATTGGATCGGTATTTATCATCCAATTCAACGTAATAAACATTACATTGAGTCAT
TGTATGCTTCAACCTCTGGTACCATCACTTTCAAATCACCAAGAATACCAGGTCTCTATG
AGATTCGTTACTTTTTACATCCAACCAAATATAATGAACAAGCAAAGATNTCATTTGAAA
TCATTGATAACGATAAGATTCAAGTCCTTAGTGAAAGTCAATCTTGTCTTACCCTCTCAC
CAGATCAAGAGTTTANAGTTGAATATGTTGTAAACACAACCGCTCCTTCCTCTTCCGATT
GGGTTGGTATTTTCCCTGTTGATGAAATTAATAACAAACATTACATTCATTCCAAATATA
CAACTTCCGCTGCATCTGGTGAATTAACCTTTAGAGCTCCACTTAAGACTGGTGATTATG
AAGCAAGATTCTTTTCTTATGCAAAAGGAAAATATATTGCTCACAAGGTTTCAAATAAAT
TCTCTGTGTTTCCNCAATCAAATTAAATAAAATTTAATGTGTGTGTGTTTTAAATAAAAT
AAAAAAAAAAATTAAAAAA
Length of 3' end seq. 669
Connected seq. ID SFK893P
Connected seq. 
>SFK893P.Seq
GTCTTCGTGAAGAATATGAAAGAAGATTAAATATGGAACTTCAAAAGAAATTGGAAATCG
AGAGACAAGAACAAGAATTGACCAGAAGAAAACAATTGGAACTTGAACAAATTATGATCC
TCAAGAAACAAGAAGAGGCAGGACTCCGTATTCTTCAAGAACAAAGAGAACATCAAGAAA
AAGTTCGTCTTGCTAAAGAGAAAGAGGAGGAATTAAAAAAAAGAACTATGGAAGAAGAAG
CAAGGAGATCGGCAATTCGTGCACAAGAAATTGCAAGAATGTCTAAACAACAACAACTCG
AAGAGGAAGCCAAACGTTTGGAACAACAAAAGAGACAAGAAGCAGAGTTTATACTTGCAT
TGGAAACCAAATCCAAAGAGGCCAACCTTATGCAACAACAAGCCTTTTTCTTAAAACAAA
AAGAACAAGAGAATCTCCAATTGATTGAAAAACAAAAGAAAGAGATCTATGAAAATCAAA
TTCAAATTGATATTTTGAAACTAAAAGAAATGGAATCTCAAAATCAAAGCAAATCAATGT
TGGAGAAAGCTCAACAAGAAATTCAAGACCTCAAGAAGAGATTGGCTGATGGT-------
---TCAAAAGTCTAGCTCCATTCAAGTTGGTCCATCCGTTACTTTATCAGCTCATGTAAT
TGGTGATGAAATCTCTGTCACCTATAAAGTAAACTNTGAAACTGGTGCCAACACTAAAGA
TTGGATCGGTATTTATCATCCAATTCAACGTAATAAACATTACATTGAGTCATTGTATGC
TTCAACCTCTGGTACCATCACTTTCAAATCACCAAGAATACCAGGTCTCTATGAGATTCG
TTACTTTTTACATCCAACCAAATATAATGAACAAGCAAAGATNTCATTTGAAATCATTGA
TAACGATAAGATTCAAGTCCTTAGTGAAAGTCAATCTTGTCTTACCCTCTCACCAGATCA
AGAGTTTANAGTTGAATATGTTGTAAACACAACCGCTCCTTCCTCTTCCGATTGGGTTGG
TATTTTCCCTGTTGATGAAATTAATAACAAACATTACATTCATTCCAAATATACAACTTC
CGCTGCATCTGGTGAATTAACCTTTAGAGCTCCACTTAAGACTGGTGATTATGAAGCAAG
ATTCTTTTCTTATGCAAAAGGAAAATATATTGCTCACAAGGTTTCAAATAAATTCTCTGT
GTTTCCNCAATCAAATTAAATAAAATTTAATGTGTGTGTGTTTTAAATAAAATAAAAAAA
AAAATTAAAAAA
Length of connected seq. 1262
Full length Seq ID -
Full length Seq. -
Length of full length seq. -