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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFK712
Library SF
(Link to library)
Clone ID SFK712
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13443-1
Original site URL
Representative seq. ID SFK712P
(Link to Original site)
Representative DNA sequence 
>SFK712 (SFK712Q) /CSM/SF/SFK7-A/SFK712Q.Seq.d/
AATTTTTATATTTTTTTTAACACACACTTTTTTATACATATAATATAGTTTTTAGTTTTT
ATAATTTGTTTTTTTTTTTATAATAATTAAATAGNGNAAAAAAAAAXXXXXXXXXXAGGT
NCTCCACCACCACCACCACCTCCACCACCACCTTCTAGTGGTCCACCACCTCCACCACCA
CCAATGGCCAGTGCTCCTCCATCATCAGGAGGTGGTGGTGCCAGCGGCGGTGGAAGAAAT
GATCTTTTGGCTTCCATTCGTAGTGGTGCAAGTCTTAAGGCTGTTGATAAAACCAATCCA
CTCCCAGATATTCAAAGTCTTGGTAATGAAGGTTCACGTTCTTTAGCTGATACTTTAGCT
GCAGCTATGGCTAATCGTAGAGGTGGTATGAGAGAAGATGATGAAGAAGATGATGATGAC
GATGATGAATGGTCAGCATTATTAAATTATTCTTTAACAAAATTCAAATTCAAAAAAATC
ATTAAATAAAG
sequence update 2001. 6. 1
Translated Amino Acid sequence 
flyff*htlfytynivfsfynlfffl**LNXXKK---

---GXPPPPPPPPPPSSGPPPPPPPMASAPPSSGGGGASGGGRNDLLASIRSGASLKAVD
KTNPLPDIQSLGNEGSRSLADTLAAAMANRRGGMREDDEEDDDDDDEWSALLNYSLTKFK
FKKIIK*
Translated Amino Acid sequence (All Frames) 
Frame A:
nfyiffnthffihii*flvfiicfffynn*ixxkk---

---rxstttttstttf*wsttstttngqcssiirrwwcqrrwkk*sfgfhs*wcks*gc*
*nqstprysksw**rftffs*yfscsyg*s*rwyerr**rr***r**mvsiiklffnkiq
iqknh*ik

Frame B:
ififflthtflyi*ysf*fl*fvfffiiik*xkkk---

---GXPPPPPPPPPPSSGPPPPPPPMASAPPSSGGGGASGGGRNDLLASIRSGASLKAVD
KTNPLPDIQSLGNEGSRSLADTLAAAMANRRGGMREDDEEDDDDDDEWSALLNYSLTKFK
FKKIIK*

Frame C:
flyff*htlfytynivfsfynlfffl**LNXXKK---

---vlhhhhhlhhhllvvhhlhhhqwpvllhhqevvvpaaveemifwlpfvvvqvlrlli
kpihsqifkvlvmkvhvl*lil*lqlwlivevv*ekmmkkmmmtmmngqhy*iil*qnsn
skkslnk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFN644 (VFN644Q) /CSM/VF/VFN6-B/VFN644Q.Seq.d/                        404   e-112
VFD730 (VFD730Q) /CSM/VF/VFD7-B/VFD730Q.Seq.d/                        404   e-112
VFA863 (VFA863Q) /CSM/VF/VFA8-C/VFA863Q.Seq.d/                        404   e-112
SSG705 (SSG705Q) /CSM/SS/SSG7-A/SSG705Q.Seq.d/                        404   e-112
SLH341 (SLH341Q) /CSM/SL/SLH3-B/SLH341Q.Seq.d/                        404   e-112
SLH135 (SLH135Q) /CSM/SL/SLH1-B/SLH135Q.Seq.d/                        404   e-112
SHE721 (SHE721Q) /CSM/SH/SHE7-A/SHE721Q.Seq.d/                        404   e-112
SFK712 (SFK712Q) /CSM/SF/SFK7-A/SFK712Q.Seq.d/                        404   e-112
SFJ736 (SFJ736Q) /CSM/SF/SFJ7-B/SFJ736Q.Seq.d/                        404   e-112
SFF823 (SFF823Q) /CSM/SF/SFF8-A/SFF823Q.Seq.d/                        404   e-112
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ401083) Dictyostelium discoideum cDNA clone:dds22h03, 3' ...   404   e-126  3
(BJ341152) Dictyostelium discoideum cDNA clone:dda5o08, 3' e...   404   e-125  2
(AF305060) Dictyostelium discoideum Wiscott-Aldrich syndrome...   404   e-123  4
(BJ398370) Dictyostelium discoideum cDNA clone:dds12n06, 3' ...   404   e-122  3
(BJ430702) Dictyostelium discoideum cDNA clone:ddv8l07, 3' e...   404   e-122  3
(BJ347276) Dictyostelium discoideum cDNA clone:dda26j18, 3' ...   404   e-122  3
(AU039202) Dictyostelium discoideum slug cDNA, clone SLH135.      404   e-122  3
(C89964) Dictyostelium discoideum slug cDNA, clone SSG705.        404   e-122  3
(BJ342636) Dictyostelium discoideum cDNA clone:dda14m22, 3' ...   404   e-122  3
(AU039281) Dictyostelium discoideum slug cDNA, clone SLH341.      404   e-122  3
dna update 2009. 1.16
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF305060_1(AF305060|pid:none) Dictyostelium discoideum Wiscott-A...    81   1e-14
AC117076_18(AC117076|pid:none) Dictyostelium discoideum chromoso...    39   0.048
DQ985464_1(DQ985464|pid:none) Suberites domuncula Wiskott-Aldric...    32   7.7
protein update 2009. 1.14
PSORT 

 psg: 0.79  gvh: 0.43  alm: 0.55  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.10
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for SFK712 is nuc
5' end seq. ID SFK712F
5' end seq. 
>SFK712F.Seq
AATTTTTATATTTTTTTTAACACACACTTTTTTATACATATAATATAGTTTTTAGTTTTT
ATAATTTGTTTTTTTTTTTATAATAATTAAATAGNGNAAAAAAAAA----------
Length of 5' end seq. 106
3' end seq. ID SFK712Z
3' end seq. 
>SFK712Z.Seq
----------AGGTNCTCCACCACCACCACCACCTCCACCACCACCTTCTAGTGGTCCAC
CACCTCCACCACCACCAATGGCCAGTGCTCCTCCATCATCAGGAGGTGGTGGTGCCAGCG
GCGGTGGAAGAAATGATCTTTTGGCTTCCATTCGTAGTGGTGCAAGTCTTAAGGCTGTTG
ATAAAACCAATCCACTCCCAGATATTCAAAGTCTTGGTAATGAAGGTTCACGTTCTTTAG
CTGATACTTTAGCTGCAGCTATGGCTAATCGTAGAGGTGGTATGAGAGAAGATGATGAAG
AAGATGATGATGACGATGATGAATGGTCAGCATTATTAAATTATTCTTTAACAAAATTCA
AATTCAAAAAAATCATTAAATAAAG
Length of 3' end seq. 375
Connected seq. ID SFK712P
Connected seq. 
>SFK712P.Seq
AATTTTTATATTTTTTTTAACACACACTTTTTTATACATATAATATAGTTTTTAGTTTTT
ATAATTTGTTTTTTTTTTTATAATAATTAAATAGNGNAAAAAAAAA----------AGGT
NCTCCACCACCACCACCACCTCCACCACCACCTTCTAGTGGTCCACCACCTCCACCACCA
CCAATGGCCAGTGCTCCTCCATCATCAGGAGGTGGTGGTGCCAGCGGCGGTGGAAGAAAT
GATCTTTTGGCTTCCATTCGTAGTGGTGCAAGTCTTAAGGCTGTTGATAAAACCAATCCA
CTCCCAGATATTCAAAGTCTTGGTAATGAAGGTTCACGTTCTTTAGCTGATACTTTAGCT
GCAGCTATGGCTAATCGTAGAGGTGGTATGAGAGAAGATGATGAAGAAGATGATGATGAC
GATGATGAATGGTCAGCATTATTAAATTATTCTTTAACAAAATTCAAATTCAAAAAAATC
ATTAAATAAAG
Length of connected seq. 481
Full length Seq ID -
Full length Seq. -
Length of full length seq. -