SFK701
Library SF
(Link to library)
Clone ID SFK701
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID SFK701Z
(Link to Original site)
Representative DNA sequence
>SFK701 (SFK701Q) /CSM/SF/SFK7-A/SFK701Q.Seq.d/
XXXXXXXXXXATCTAGAACTGGTGGTTCCTCATCTGCTGGTACAGTCGGTAACGTAATCT
CTGATTCTTATACATCAATTGGTAAAATTGCATCTGGTAATGGTAATTCCCTTAGTGAGA
CCATTGGTACCACTGGTGATACATTGGCTCATACATTCGCTGGTACAGATTCAGTCGGTG
TAACTGGTTTCCATATAATTACAAAGACTTTTAATTTGATTGCTGGTGGTAAATTTAACT
CTGATCAACAATACATTGATAAATCCTACGGTTCAATTCCATCACAAGATAATGAAGAAA
TTAAAAAGAGATTACAAAGTGCTCATCAACAATTACAAGAACAATCACCTGCAATCTATC
AATCAATGAAATCTGAAGATCTAAAAAATTTAGATGATGAAGTAATTCGTAATACTCTTA
AGGAAATGCAAATTCAACGTGAAAATCAAGATATTGGTCAACAAAATCAAGAAGATAAAG
AACAATTAATTGATTTACAAAATAGAGAACCTGGTTTATACAAAAATCAACAAGATCTTA
AACAAGAGAAAAGAGCCAATCAACAAGAATTAATCAATTATGAATTGAATTTACAAGAAG
ATCAAGAACAATATGAACTTTTATTAGATCAACTCTATGATGAACAACAAGATAAATTAA
ATCAAGAAAAAAATCAACAATTANNAGAACAAGAACNAAATCAAAAATAA
sequence update 2001. 6. 1
Translated Amino Acid sequence
---SRTGGSSSAGTVGNVISDSYTSIGKIASGNGNSLSETIGTTGDTLAHTFAGTDSVGV
TGFHIITKTFNLIAGGKFNSDQQYIDKSYGSIPSQDNEEIKKRLQSAHQQLQEQSPAIYQ
SMKSEDLKNLDDEVIRNTLKEMQIQRENQDIGQQNQEDKEQLIDLQNREPGLYKNQQDLK
QEKRANQQELINYELNLQEDQEQYELLLDQLYDEQQDKLNQEKNQQLXEQEXNQK*


Translated Amino Acid sequence (All Frames)
Frame A:
---SRTGGSSSAGTVGNVISDSYTSIGKIASGNGNSLSETIGTTGDTLAHTFAGTDSVGV
TGFHIITKTFNLIAGGKFNSDQQYIDKSYGSIPSQDNEEIKKRLQSAHQQLQEQSPAIYQ
SMKSEDLKNLDDEVIRNTLKEMQIQRENQDIGQQNQEDKEQLIDLQNREPGLYKNQQDLK
QEKRANQQELINYELNLQEDQEQYELLLDQLYDEQQDKLNQEKNQQLXEQEXNQK*


Frame B:
---lelvvphllvqsvt*slilihqlvklhlvmviplvrplvplvihwlihslvqiqsv*
lvsi*lqrlli*llvvnltlinntlinptvqfhhkimkklkrdykvlinnyknnhlqsin
q*nlki*ki*mmk*fvillrkckfnvkikilvnkikkiknn*liykienlvytkinkiln
krkepinkn*simn*iykkiknnmnfy*insmmnnkin*ikkkinnxxnknxikn


Frame C:
---*nwwflicwysr*rnl*flyinw*nciw*w*fp**dhwyhw*yigsyirwyrfsrcn
wfpynykdf*fdcww*i*l*stih**ilrfnsitr**rn*keitkcsstitrtitcnlsi
nei*rskkfr**sns*ys*gnanst*ksrywstksrr*rtin*ftk*rtwfiqkstrs*t
reksqstrinql*ieftrrsrti*tfirstl**ttr*iksrkkstixrtrtkski


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFK701 (SFK701Q) /CSM/SF/SFK7-A/SFK701Q.Seq.d/ 1328 0.0
CFF619 (CFF619Q) /CSM/CF/CFF6-A/CFF619Q.Seq.d/ 1211 0.0
AFN735 (AFN735Q) /CSM/AF/AFN7-B/AFN735Q.Seq.d/ 1172 0.0
SFB370 (SFB370Q) /CSM/SF/SFB3-C/SFB370Q.Seq.d/ 1164 0.0
SFJ324 (SFJ324Q) /CSM/SF/SFJ3-A/SFJ324Q.Seq.d/ 1160 0.0
CHD226 (CHD226Q) /CSM/CH/CHD2-B/CHD226Q.Seq.d/ 1154 0.0
CHC546 (CHC546Q) /CSM/CH/CHC5-B/CHC546Q.Seq.d/ 1144 0.0
SFE858 (SFE858Q) /CSM/SF/SFE8-C/SFE858Q.Seq.d/ 1142 0.0
CFH714 (CFH714Q) /CSM/CF/CFH7-A/CFH714Q.Seq.d/ 1120 0.0
AFK694 (AFK694Q) /CSM/AF/AFK6-D/AFK694Q.Seq.d/ 1102 0.0

own update 2002.12. 3
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ401055) Dictyostelium discoideum cDNA clone:dds22b01, 3' ... 1300 0.0 2
(U25143) Dictyostelium discoideum cAMP-inducible prespore pr... 1269 0.0 1
(BJ372306) Dictyostelium discoideum cDNA clone:ddc12e06, 3' ... 1211 0.0 3
(BJ345635) Dictyostelium discoideum cDNA clone:dda28f09, 3' ... 1172 0.0 3
(BJ399018) Dictyostelium discoideum cDNA clone:dds3l17, 3' e... 1164 0.0 1
(BJ401732) Dictyostelium discoideum cDNA clone:dds19p05, 3' ... 1160 0.0 1
(BJ376373) Dictyostelium discoideum cDNA clone:ddc28c08, 3' ... 1154 0.0 1
(BJ363580) Dictyostelium discoideum cDNA clone:ddc27k11, 5' ... 1144 0.0 1
(BJ397987) Dictyostelium discoideum cDNA clone:dds10d16, 3' ... 1142 0.0 1
(BJ361200) Dictyostelium discoideum cDNA clone:ddc16l03, 5' ... 1120 0.0 1
dna update 2009. 1.16
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags... 346 3e-94
CR940347_653(CR940347|pid:none) Theileria annulata strain Ankara... 50 9e-05
CP001279_131(CP001279|pid:none) Nautilia profundicola AmH, compl... 49 2e-04
(Q54VY3) RecName: Full=Putative uncharacterized protein DDB_G028... 47 4e-04
AF305694_1(AF305694|pid:none) Kaposi's sarcoma-associated herpes... 47 7e-04
BT036468_1(BT036468|pid:none) Zea mays full-length cDNA clone ZM... 46 0.001
AF192756_1(AF192756|pid:none) Kaposi's sarcoma-associated herpes... 45 0.002
AF360120_1(AF360120|pid:none) Human herpesvirus 8 ORF73 gene, co... 45 0.002
AF148805_82(AF148805|pid:none) Human herpesvirus 8 type P isolat... 45 0.002
BC149000_1(BC149000|pid:none) Bos taurus involucrin, mRNA (cDNA ... 45 0.002
protein update 2009. 5.27
PSORT

psg: 0.85 gvh: 0.42 alm: 0.42 top: 0.40 tms: 0.00 mit: 0.33 mip: 0.02
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
32.0 %: cytoplasmic
16.0 %: mitochondrial
4.0 %: endoplasmic reticulum

>> prediction for SFK701 is nuc

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SFK701Z
3' end seq.
>SFK701Z.Seq
----------ATCTAGAACTGGTGGTTCCTCATCTGCTGGTACAGTCGGTAACGTAATCT
CTGATTCTTATACATCAATTGGTAAAATTGCATCTGGTAATGGTAATTCCCTTAGTGAGA
CCATTGGTACCACTGGTGATACATTGGCTCATACATTCGCTGGTACAGATTCAGTCGGTG
TAACTGGTTTCCATATAATTACAAAGACTTTTAATTTGATTGCTGGTGGTAAATTTAACT
CTGATCAACAATACATTGATAAATCCTACGGTTCAATTCCATCACAAGATAATGAAGAAA
TTAAAAAGAGATTACAAAGTGCTCATCAACAATTACAAGAACAATCACCTGCAATCTATC
AATCAATGAAATCTGAAGATCTAAAAAATTTAGATGATGAAGTAATTCGTAATACTCTTA
AGGAAATGCAAATTCAACGTGAAAATCAAGATATTGGTCAACAAAATCAAGAAGATAAAG
AACAATTAATTGATTTACAAAATAGAGAACCTGGTTTATACAAAAATCAACAAGATCTTA
AACAAGAGAAAAGAGCCAATCAACAAGAATTAATCAATTATGAATTGAATTTACAAGAAG
ATCAAGAACAATATGAACTTTTATTAGATCAACTCTATGATGAACAACAAGATAAATTAA
ATCAAGAAAAAAATCAACAATTANNAGAACAAGAACNAAATCAAAAATAA
Length of 3' end seq. 700
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -