AFI627
Library AF
(Link to library)
Clone ID AFI627
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15545-1
Original site URL
Representative seq. ID AFI627Z
(Link to Original site)
Representative DNA sequence
>AFI627 (AFI627Q) /CSM/AF/AFI6-B/AFI627Q.Seq.d/
XXXXXXXXXXGAGCCACCGAAGTTGATACTTTAAATTCAATACCAATGATGTTCTCAACT
TCAAATAGATTCGTTTATTATGTACCAGCAAAATCAAATGACGATCCAAGATGGGATGCA
GTTATCGATAAACTTCAAATGGTTGGTAGAGGCAATGGTGGCGCTGTTAGAGGTATCTAT
AAAGGTGTTATTGAGACCACTTTCTTTGGCAAAAGAGTTTATTTGGTTGGTACCTATTCA
CCATTCTATAGTCAACAACAAAGAAATAAAAGTCAACGTATACTTTTCAATGATTTTCCA
AAGGAAGAATTTGATCCAACCATCACAAATCCTTTAACAAGTACTATGCTATTTAGAACT
GGTAAAGATCTCTCATTGGATATTACTTTGGCTGAAAAAGTTTTCTCTTGTAAAGACTTT
TGTGAAAAACATAAAGTATCATGTTTAGAATCTGATATGATGTTATTAACTGATAGTACT
ATAGTTTTACTACAATTGGAACAACATTGTAGTCAAGTAAACTATATACCAAGTAATAAT
ACCGATACATTTTATCCAATCAAAGATAAAGATGGCATTTGTTGGACTACAATA
sequence update 2001. 6. 2
Translated Amino Acid sequence
---ATEVDTLNSIPMMFSTSNRFVYYVPAKSNDDPRWDAVIDKLQMVGRGNGGAVRGIYK
GVIETTFFGKRVYLVGTYSPFYSQQQRNKSQRILFNDFPKEEFDPTITNPLTSTMLFRTG
KDLSLDITLAEKVFSCKDFCEKHKVSCLESDMMLLTDSTIVLLQLEQHCSQVNYIPSNNT
DTFYPIKDKDGICWTTI


Translated Amino Acid sequence (All Frames)
Frame A:
---shrs*yfkfntndvlnfk*irllctskik*rskmgcsyr*tsngw*rqwwrc*ryl*
rcy*dhflwqkslfgwylftil*sttkk*kstytfq*fskgri*snhhksfnkyyai*nw
*rsligyyfg*ksfll*rll*kt*simfri*ydvin**yysfttigttl*ssklytk**y
ryilsnqr*rwhlldyn


Frame B:
---ATEVDTLNSIPMMFSTSNRFVYYVPAKSNDDPRWDAVIDKLQMVGRGNGGAVRGIYK
GVIETTFFGKRVYLVGTYSPFYSQQQRNKSQRILFNDFPKEEFDPTITNPLTSTMLFRTG
KDLSLDITLAEKVFSCKDFCEKHKVSCLESDMMLLTDSTIVLLQLEQHCSQVNYIPSNNT
DTFYPIKDKDGICWTTI


Frame C:
---ppklil*iqyq*csqlqidsfimyqqnqmtiqdgmqlsinfkwlveamvallevsik
vllrplslakefiwlvpihhsivnnkeikvnvyfsmifqrknliqpsqil*qvlcylelv
kishwillwlkkfslvktfvknikyhv*nli*cy*livl*fyynwnnivvk*tiyqviip
ihfiqskikmafvglq


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

AFI627 (AFI627Q) /CSM/AF/AFI6-B/AFI627Q.Seq.d/ 1158 0.0
AFF364 (AFF364Q) /CSM/AF/AFF3-C/AFF364Q.Seq.d/ 1130 0.0
SFE435 (SFE435Q) /CSM/SF/SFE4-B/SFE435Q.Seq.d/ 1128 0.0
AFC207 (AFC207Q) /CSM/AF/AFC2-A/AFC207Q.Seq.d/ 1110 0.0
AFO831 (AFO831Q) /CSM/AF/AFO8-B/AFO831Q.Seq.d/ 1090 0.0
CHD312 (CHD312Q) /CSM/CH/CHD3-A/CHD312Q.Seq.d/ 1086 0.0
AFK872 (AFK872Q) /CSM/AF/AFK8-C/AFK872Q.Seq.d/ 1063 0.0
AHK215 (AHK215Q) /CSM/AH/AHK2-A/AHK215Q.Seq.d/ 1049 0.0
CFG834 (CFG834Q) /CSM/CF/CFG8-B/CFG834Q.Seq.d/ 1045 0.0
AFM267 (AFM267Q) /CSM/AF/AFM2-C/AFM267Q.Seq.d/ 1033 0.0

own update 2009. 4. 3
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC011252|AC011252.5 Drosophila melanogaster clone BACR23H21, complete sequence. 42 0.058 6
AI484136|AI484136.1 EST248943 tomato resistant, Cornell Lycopersicon esculentum cDNA clone cLER1C5, mRNA sequence. 38 0.12 2
BG128254|BG128254.1 EST473900 tomato shoot/meristem Lycopersicon esculentum cDNA clone cTOF19D15 5' sequence, mRNA sequence. 38 0.12 2
AI490786|AI490786.1 EST241494 tomato shoot, Cornell Lycopersicon esculentum cDNA clone cLEB3H9 similar to cinnamic acid 4-hydroxylase, mRNA sequence. 38 0.12 2
AC102444|AC102444.8 Mus musculus chromosome 1, clone RP24-196I15, complete sequence. 38 0.12 7
BG133859|BG133859.1 EST466751 tomato crown gall Lycopersicon esculentum cDNA clone cTOE14I10 5' sequence, mRNA sequence. 38 0.12 2
AI773934|AI773934.1 EST255034 tomato resistant, Cornell Lycopersicon esculentum cDNA clone cLER8N1, mRNA sequence. 38 0.13 2
CR382135|CR382135.1 Debaryomyces hansenii chromosome C of strain CBS767 of Debaryomyces hansenii. 36 0.42 16
CR376789|CR376789.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone. 34 0.45 7
AC092695|AC092695.8 Homo sapiens 3q BAC RP11-81E19 (Roswell Park Cancer Institute Human BAC Library) complete sequence. 42 0.46 5
dna update 2004. 9.22
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CP001175_2092(CP001175|pid:none) Listeria monocytogenes HCC23, c... 37 0.30
Y17877_1(Y17877|pid:none) Sycon raphanus mRNA for insulin recept... 36 0.86
BT011349_1(BT011349|pid:none) Drosophila melanogaster RH02355 fu... 34 2.5
AY069808_1(AY069808|pid:none) Drosophila melanogaster SD04942 fu... 34 2.5
AC009322_3(AC009322|pid:none) Arabidopsis thaliana chromosome I ... 34 2.5
AE014297_4620(AE014297|pid:none) Drosophila melanogaster chromos... 34 2.5
AX814538_1(AX814538|pid:none) Sequence 19 from Patent WO03064471. 34 3.2
AM270068_10(AM270068|pid:none) Aspergillus niger contig An04c007... 34 3.3
AE009439_1402(AE009439|pid:none) Methanopyrus kandleri AV19, com... 33 4.3
DQ812518_2(DQ812518|pid:none) Spironucleus barkhanus isolate Sp1... 33 4.3
protein update 2009. 4.23
PSORT

psg: 0.75 gvh: 0.39 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.16 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: cytoplasmic
36.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: mitochondrial

>> prediction for AFI627 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID AFI627Z
3' end seq.
>AFI627Z.Seq
----------GAGCCACCGAAGTTGATACTTTAAATTCAATACCAATGATGTTCTCAACT
TCAAATAGATTCGTTTATTATGTACCAGCAAAATCAAATGACGATCCAAGATGGGATGCA
GTTATCGATAAACTTCAAATGGTTGGTAGAGGCAATGGTGGCGCTGTTAGAGGTATCTAT
AAAGGTGTTATTGAGACCACTTTCTTTGGCAAAAGAGTTTATTTGGTTGGTACCTATTCA
CCATTCTATAGTCAACAACAAAGAAATAAAAGTCAACGTATACTTTTCAATGATTTTCCA
AAGGAAGAATTTGATCCAACCATCACAAATCCTTTAACAAGTACTATGCTATTTAGAACT
GGTAAAGATCTCTCATTGGATATTACTTTGGCTGAAAAAGTTTTCTCTTGTAAAGACTTT
TGTGAAAAACATAAAGTATCATGTTTAGAATCTGATATGATGTTATTAACTGATAGTACT
ATAGTTTTACTACAATTGGAACAACATTGTAGTCAAGTAAACTATATACCAAGTAATAAT
ACCGATACATTTTATCCAATCAAAGATAAAGATGGCATTTGTTGGACTACAATA
Length of 3' end seq. 584
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -