SFK594
Library SF
(Link to library)
Clone ID SFK594
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16368-1
Original site URL
Representative seq. ID SFK594F
(Link to Original site)
Representative DNA sequence
>SFK594 (SFK594Q) /CSM/SF/SFK5-D/SFK594Q.Seq.d/
TATATATATATAAAAATGTAAAAAAAATAAAATGAGANTTTTATNTTTAGCTTCTCTTTT
ATTTGTAATTACATTATATNTATCACCAACTTTTGGTTGGGGNGXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence
iyi*KCKKNKMRXLXLASLLFVITLYXSPTFGWG---


Translated Amino Acid sequence (All Frames)
Frame A:
yiyikm*kk*nexfxfsfsficnyiixitnfwlg---


Frame B:
iyi*KCKKNKMRXLXLASLLFVITLYXSPTFGWG---


Frame C:
yiyknvkkik*xfyx*llfyl*lhyxyhqllvg---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFK594 (SFK594Q) /CSM/SF/SFK5-D/SFK594Q.Seq.d/ 113 5e-25
SSA149 (SSA149Q) /CSM/SS/SSA1-C/SSA149Q.Seq.d/ 105 1e-22
SLJ443 (SLJ443Q) /CSM/SL/SLJ4-B/SLJ443Q.Seq.d/ 105 1e-22
SLJ317 (SLJ317Q) /CSM/SL/SLJ3-A/SLJ317Q.Seq.d/ 105 1e-22
SLI120 (SLI120Q) /CSM/SL/SLI1-A/SLI120Q.Seq.d/ 105 1e-22
SLG851 (SLG851Q) /CSM/SL/SLG8-C/SLG851Q.Seq.d/ 105 1e-22
SLD532 (SLD532Q) /CSM/SL/SLD5-B/SLD532Q.Seq.d/ 105 1e-22
SLD468 (SLD468Q) /CSM/SL/SLD4-C/SLD468Q.Seq.d/ 105 1e-22
SLB538 (SLB538Q) /CSM/SL/SLB5-B/SLB538Q.Seq.d/ 105 1e-22
SLB120 (SLB120Q) /CSM/SL/SLB1-A/SLB120Q.Seq.d/ 105 1e-22

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ390565) Dictyostelium discoideum cDNA clone:dds22k23, 5' ... 113 1e-21 1
(D13973) Dictyostelium discoideum gene for Dp87 protein, com... 105 3e-19 1
(AU076317) Dictyostelium discoideum slug cDNA, clone SSA149. 105 3e-19 1
(AU062165) Dictyostelium discoideum slug cDNA, clone SLI120. 105 3e-19 1
(AU061979) Dictyostelium discoideum slug cDNA, clone SLG851. 105 3e-19 1
(AU061204) Dictyostelium discoideum slug cDNA, clone SLD532. 105 3e-19 1
(AU061170) Dictyostelium discoideum slug cDNA, clone SLD468. 105 3e-19 1
(AU060802) Dictyostelium discoideum slug cDNA, clone SLB538. 105 3e-19 1
(AU060689) Dictyostelium discoideum slug cDNA, clone SLB120. 105 3e-19 1
(AU060362) Dictyostelium discoideum slug cDNA, clone SLJ443. 105 3e-19 1
dna update 2009. 1.13
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q04503) RecName: Full=Prespore protein Dp87; Flags: Precursor; 44 0.001
D13973_1(D13973|pid:none) Dictyostelium discoideum gene for Dp87... 44 0.001

protein update 2009. 1.14
PSORT

psg: 0.96 gvh: 0.67 alm: 17.64 top: 0.13 tms: -0.07 mit: 0.42 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

44.0 %: cytoplasmic
28.0 %: mitochondrial
12.0 %: nuclear
8.0 %: cytoskeletal
8.0 %: plasma membrane

>> prediction for SFK594 is cyt

5' end seq. ID SFK594F
5' end seq.
>SFK594F.Seq
TATATATATATAAAAATGTAAAAAAAATAAAATGAGANTTTTATNTTTAGCTTCTCTTTT
ATTTGTAATTACATTATATNTATCACCAACTTTTGGTTGGGGNG----------
Length of 5' end seq. 104
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -