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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFK488
Library SF
(Link to library)
Clone ID SFK488
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U03723-1
Original site URL
Representative seq. ID SFK488F
(Link to Original site)
Representative DNA sequence 
>SFK488 (SFK488Q) /CSM/SF/SFK4-D/SFK488Q.Seq.d/
AAAATAAAATAAAACTTTAATAATAATAAATAATTAATAAAGATTTTAAAAAAAATAAAT
AAATAAAAATAAATAAATATAAACAAAAATAAACATATATAAAAATAAATAAATAAAAAA
AAAAXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence 
kik*nfnnnk*LIKILKKINK*k*ininknkhi*k*inkkk---
Translated Amino Acid sequence (All Frames) 
Frame A:
kik*nfnnnk*LIKILKKINK*k*ininknkhi*k*inkkk---


Frame B:
k*nktliiinn**rf*kk*inknk*i*tkiniyknk*ikk---


Frame C:
nkikl****iinkdfkknk*ikinkykqk*tyikink*kk---
Homology vs CSM-cDNA -
own update ----------
Homology vs DNA 

 ***** No hits found ******

Lambda     K      H
   -1.00    -1.00    -1.00

[blastall] WARNING:  [000.000]  SetUpBlastSearch failed.
[blastall] ERROR:  [000.000]  BLASTSetUpSearch: Unable to calculate Karlin-Altschul params, check query sequence

ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.







Dictyostelium discoideum cDNA Project Home
dna update 2003. 6.12
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3101297
Number of Hits to DB: 10,062,924
protein update 2009. 5.27
PSORT -
5' end seq. ID SFK488F
5' end seq. 
>SFK488F.Seq
AAAATAAAATAAAACTTTAATAATAATAAATAATTAATAAAGATTTTAAAAAAAATAAAT
AAATAAAAATAAATAAATATAAACAAAAATAAACATATATAAAAATAAATAAATAAAAAA
AAAA----------
Length of 5' end seq. 124
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -