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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFK327
Library SF
(Link to library)
Clone ID SFK327
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13829-1
Original site URL
Representative seq. ID SFK327F
(Link to Original site)
Representative DNA sequence 
>SFK327 (SFK327Q) /CSM/SF/SFK3-B/SFK327Q.Seq.d/
ATTAATTAAATTTATCCACACACACATAATATATATACACCAAAAATGAATTGGAAAGAG
CAACTTGAAGAAATTGGTAATTGCCAAGATTCAAACAAAGCTATCCAAGATTATAATAAA
ATTCTCACTATTCAAGAATCACCAGATGATATTAAAGAGGAAGCAATTCTTAGATTAGCA
AAATTATTTGTAAAGATTGGTAAAGGTGATCAATTACCAACACTTTTAAGATCAGTTAGA
CCATTTTTTTGATAAAATTTCTAAACCAAAGACTGATAAAATCGTTAGAAATTTTATTGA
TATTTTCTCAACCGTACCTGATAATTTAACAACTTTAATTGAATTTGTCAAAGAGAATAT
TCAATGGTGTAAAGATACAAATAGAATTTATTTAAGACAAAGATTAGAAACTAAACTTTT
TACATTAATGTTTGAAGCAAAAGATTATGCAAATGCATTAAGCGGATTAACAACATTATT
AACAGAAATTAAAAGATTGGATGATAAACCATTATTAGTTGAAATTCAACTTGTTGGAGA
GTAGAATTCAACATGCTCTTAAAAXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence 
likfihthiiyihqk*igksnlkklviakiqtklskiiikfslfknhqmilkrkqfld*q
nyl*rlvkvinyqhf*DQLDHFFDKISKPKTDKIVRNFIDIFSTVPDNLTTLIEFVKENI
QWCKDTNRIYLRQRLETKLFTLMFEAKDYANALSGLTTLLTEIKRLDDKPLLVEIQLVGE
*nstcs*---
Translated Amino Acid sequence (All Frames) 
Frame A:
in*iyphthniytpkmnwkeqleeigncqdsnkaiqdynkiltiqespddikeeailrla
klfvkigkgdqlptllrsvrpff**nf*tkd**nr*kfy*yflnrt**fnnfn*icqrey
smv*ryk*nlfktkirn*tfyinv*skrlckcikrinniinrn*kig**tiis*nstcwr
vefnmll---


Frame B:
likfihthiiyihqk*igksnlkklviakiqtklskiiikfslfknhqmilkrkqfld*q
nyl*rlvkvinyqhf*DQLDHFFDKISKPKTDKIVRNFIDIFSTVPDNLTTLIEFVKENI
QWCKDTNRIYLRQRLETKLFTLMFEAKDYANALSGLTTLLTEIKRLDDKPLLVEIQLVGE
*nstcs*---


Frame C:
*lnlstht*yiytknelerat*rnw*lprfkqsyprl**nshysritr*y*rgsns*isk
iickdw*r*sitntfkis*tiflikflnqrliksleillifsqpylii*ql*lnlskrif
ngvkiqiefi*dkd*klnflh*clkqkimqmh*ad*qhy*qklkdwminhy*lkfnlles
riqhalk---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFK327 (SFK327Q) /CSM/SF/SFK3-B/SFK327Q.Seq.d/                       1076   0.0
AFI879 (AFI879Q) /CSM/AF/AFI8-D/AFI879Q.Seq.d/                       1059   0.0
VFG750 (VFG750Q) /CSM/VF/VFG7-C/VFG750Q.Seq.d/                       1055   0.0
SFJ236 (SFJ236Q) /CSM/SF/SFJ2-B/SFJ236Q.Seq.d/                       1053   0.0
AFL529 (AFL529Q) /CSM/AF/AFL5-B/AFL529Q.Seq.d/                       1053   0.0
VFH217 (VFH217Q) /CSM/VF/VFH2-A/VFH217Q.Seq.d/                       1051   0.0
AFI536 (AFI536Q) /CSM/AF/AFI5-B/AFI536Q.Seq.d/                       1049   0.0
AFG380 (AFG380Q) /CSM/AF/AFG3-D/AFG380Q.Seq.d/                       1047   0.0
VFM634 (VFM634Q) /CSM/VF/VFM6-B/VFM634Q.Seq.d/                       1045   0.0
VFK702 (VFK702Q) /CSM/VF/VFK7-A/VFK702Q.Seq.d/                       1045   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ390143) Dictyostelium discoideum cDNA clone:dds21f07, 5' ...   622   0.0    2
(BJ389590) Dictyostelium discoideum cDNA clone:dds19g10, 5' ...   622   0.0    2
(BJ329257) Dictyostelium discoideum cDNA clone:dda24i07, 5' ...   622   0.0    2
(BJ327043) Dictyostelium discoideum cDNA clone:dda18n20, 5' ...   622   0.0    2
(BJ326868) Dictyostelium discoideum cDNA clone:dda18g09, 5' ...   622   0.0    2
(BJ416384) Dictyostelium discoideum cDNA clone:ddv26c10, 5' ...   567   0.0    3
(BJ415266) Dictyostelium discoideum cDNA clone:ddv22d01, 5' ...   567   0.0    3
(BJ414997) Dictyostelium discoideum cDNA clone:ddv21i05, 5' ...   567   0.0    3
(BJ414965) Dictyostelium discoideum cDNA clone:ddv21c02, 5' ...   567   0.0    3
(BJ413297) Dictyostelium discoideum cDNA clone:ddv15a06, 5' ...   567   0.0    3
dna update 2008.12.31
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54UB5) RecName: Full=26S proteasome non-ATPase regulatory subu...   194   1e-84
AY230834_1(AY230834|pid:none) Arabidopsis thaliana 26S proteasom...    87   3e-19
AF083890_1(AF083890|pid:none) Arabidopsis thaliana 19S proteosom...    87   8e-19
A86414(A86414) hypothetical protein F28N24.15 - Arabidopsis thal...    87   8e-19
AM424416_1(AM424416|pid:none) Vitis vinifera contig VV78X196128....    87   1e-18
AY230837_1(AY230837|pid:none) Arabidopsis thaliana 26S proteasom...    87   1e-18
DQ000548_1(DQ000548|pid:none) Synthetic construct clone PSF:1085...    77   2e-17
BC168749_1(BC168749|pid:none) Rattus norvegicus cDNA clone IMAGE...    77   2e-17
AK076002_1(AK076002|pid:none) Mus musculus 10 days embryo whole ...    77   2e-17
(Q8BG32) RecName: Full=26S proteasome non-ATPase regulatory subu...    77   2e-17
protein update 2009. 5.27
PSORT 

 psg: 0.75  gvh: 0.33  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SFK327 is nuc
5' end seq. ID SFK327F
5' end seq. 
>SFK327F.Seq
ATTAATTAAATTTATCCACACACACATAATATATATACACCAAAAATGAATTGGAAAGAG
CAACTTGAAGAAATTGGTAATTGCCAAGATTCAAACAAAGCTATCCAAGATTATAATAAA
ATTCTCACTATTCAAGAATCACCAGATGATATTAAAGAGGAAGCAATTCTTAGATTAGCA
AAATTATTTGTAAAGATTGGTAAAGGTGATCAATTACCAACACTTTTAAGATCAGTTAGA
CCATTTTTTTGATAAAATTTCTAAACCAAAGACTGATAAAATCGTTAGAAATTTTATTGA
TATTTTCTCAACCGTACCTGATAATTTAACAACTTTAATTGAATTTGTCAAAGAGAATAT
TCAATGGTGTAAAGATACAAATAGAATTTATTTAAGACAAAGATTAGAAACTAAACTTTT
TACATTAATGTTTGAAGCAAAAGATTATGCAAATGCATTAAGCGGATTAACAACATTATT
AACAGAAATTAAAAGATTGGATGATAAACCATTATTAGTTGAAATTCAACTTGTTGGAGA
GTAGAATTCAACATGCTCTTAAAA----------
Length of 5' end seq. 564
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -