>SFK304 (SFK304Q) /CSM/SF/SFK3-A/SFK304Q.Seq.d/
ATTTTCATTTTTTCAAAAACACACATTCATTATCATTTAAATAATTTTGTAACTAGTTAC
ATAATAAAAATGTCAAATGCTGCATTACCAAAAACCAAAGTTCTAATTACTGGTGCAACT
GGATTATTAGGAAGAGCATTAATGAAAGTATTTACACAACCACCATTAGAACATATAAAA
TTAGTTGGATTAGGATGGAGTAGATATGAAAAATATGTAAATCAATTTCCAAATGAATTA
AGAAAATTAGATATTACCAATGATTCTGAATTGAGTGAATTTGTTAATGATTTCAAACCA
AACGTTATCATTCATGCAGCAGCTGAAAGAAGACCAGATCAATGTGAAGGTGATAAAGAG
AAAACTCAAAAACTAAATGTTGGTACCACTGAAAAATTGATTGAATTATCTAAATCTGTT
AATGCAACTCTATTTTACATTAGTTCAGATTATGTTTTCGATGGTGAAAACCCACCATAT
GATATTGATGCCAAAACCAACCCATTATCATTTTATGGTAAAACCAAAGAAGAATCTGAG
CAATTAATTATCAAAGCATCCAAAGAATCTGATTCATTTCAAGTATATCATACTTTAGAG
TACCAGTATTGTATGGGTTATGTTGAAAATTTAAAAGAATGGTGCAGTTACAGCAGTCGC
AGAXXXXXXXXXX

IFIFSKTHIHYHLNNFVTSYIIKMSNAALPKTKVLITGATGLLGRALMKVFTQPPLEHIK
LVGLGWSRYEKYVNQFPNELRKLDITNDSELSEFVNDFKPNVIIHAAAERRPDQCEGDKE
KTQKLNVGTTEKLIELSKSVNATLFYISSDYVFDGENPPYDIDAKTNPLSFYGKTKEESE
QLIIKASKESDSFQVYHTLEYQYCMGYVENLKEWCSYSSR---

Frame A:
IFIFSKTHIHYHLNNFVTSYIIKMSNAALPKTKVLITGATGLLGRALMKVFTQPPLEHIK
LVGLGWSRYEKYVNQFPNELRKLDITNDSELSEFVNDFKPNVIIHAAAERRPDQCEGDKE
KTQKLNVGTTEKLIELSKSVNATLFYISSDYVFDGENPPYDIDAKTNPLSFYGKTKEESE
QLIIKASKESDSFQVYHTLEYQYCMGYVENLKEWCSYSSR---


Frame B:
fsffqkhtfiii*iil*lvt**kcqmlhyqkpkf*llvqldy*eeh**kylhnhh*ni*n
*ld*dgvdmknm*infqmn*en*ilpmiln*vnllmisnqtlsfmqqlkedqinvkvikr
klkn*mlvplkn*lnylnllmqlyftlvqimfsmvkthhmilmpkpthyhfmvkpkknls
n*lskhpknlihfkyiil*stsivwvmlki*kngavtava---


Frame C:
fhffknthslsfk*fcn*lhnknvkccitknqssnywcnwiirksinesiytttirtyki
swirme*i*kicksisk*ikkiryyq*f*ie*ic**fqtkryhscss*kktrsm*r**re
nsktkcwyh*kid*ii*ic*cnsilh*frlcfrw*kpti*y*cqnqpiiilw*nqrri*a
inyqsiqri*fissisyfrvpvlyglc*kfkrmvqlqqsq---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFK304 (SFK304Q) /CSM/SF/SFK3-A/SFK304Q.Seq.d/                       1314   0.0
SSL153 (SSL153Q) /CSM/SS/SSL1-C/SSL153Q.Seq.d/                       1120   0.0
CFF518 (CFF518Q) /CSM/CF/CFF5-A/CFF518Q.Seq.d/                       1108   0.0
SFK877 (SFK877Q) /CSM/SF/SFK8-D/SFK877Q.Seq.d/                        547   e-155
VFG839 (VFG839Q) /CSM/VF/VFG8-B/VFG839Q.Seq.d/                        327   1e-88
VHI405 (VHI405Q) /CSM/VH/VHI4-A/VHI405Q.Seq.d/                         44   0.003
VHI305 (VHI305Q) /CSM/VH/VHI3-A/VHI305Q.Seq.d/                         44   0.003
VHH759 (VHH759Q) /CSM/VH/VHH7-C/VHH759Q.Seq.d/                         44   0.003
SSM810 (SSM810Q) /CSM/SS/SSM8-A/SSM810Q.Seq.d/                         38   0.17
SSL157 (SSL157Q) /CSM/SS/SSL1-C/SSL157Q.Seq.d/                         38   0.17

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ390071) Dictyostelium discoideum cDNA clone:dds21h01, 5' ...  1314   0.0    1
(BJ358939) Dictyostelium discoideum cDNA clone:ddc12c05, 5' ...   700   0.0    1
(BJ401320) Dictyostelium discoideum cDNA clone:dds22j20, 3' ...   442   e-149  5
(BJ372298) Dictyostelium discoideum cDNA clone:ddc12c05, 3' ...   404   e-141  6
(AU074506) Dictyostelium discoideum slug cDNA, clone SSL153.      452   e-123  1
(C94518) Dictyostelium discoideum slug cDNA, clone SSL153.        281   e-101  5
(BJ431509) Dictyostelium discoideum cDNA clone:ddv14n10, 3' ...   222   1e-83  5
(AU060546) Dictyostelium discoideum slug cDNA, clone SLK357.      145   2e-30  1
(AM652492) Entamoeba moshkovskii FIC GSS, clone mosh118c07.q1k.    44   0.002  3
(EC301176) OVARYF091722F5 POSSUM_01-POSSUM-C-OVARY-2KB Trich...    42   0.008  3

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000961_583(CP000961|pid:none) Shewanella woodyi ATCC 51908, co...   124   2e-27
(Q4QQZ4) RecName: Full=Methionine adenosyltransferase 2 subunit ...   123   5e-27
(Q566L8) RecName: Full=Methionine adenosyltransferase 2 subunit ...   122   7e-27
(Q99LB6) RecName: Full=Methionine adenosyltransferase 2 subunit ...   122   9e-27
AK075947_1(AK075947|pid:none) Mus musculus ES cells cDNA, RIKEN ...   122   9e-27
(Q29RI9) RecName: Full=Methionine adenosyltransferase 2 subunit ...   121   2e-26
AP007162_246(AP007162|pid:none) Aspergillus oryzae RIB40 genomic...   120   4e-26
CP001252_454(CP001252|pid:none) Shewanella baltica OS223, comple...   118   1e-25
CP000563_3811(CP000563|pid:none) Shewanella baltica OS155, compl...   118   1e-25
DQ000575_1(DQ000575|pid:none) Synthetic construct clone PSF:1099...   118   2e-25

 psg: 0.85  gvh: 0.47  alm: 0.39  top: 0.50  tms: 0.00  mit: 0.34  mip: 0.12
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: mitochondrial
	 20.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum

>> prediction for SFK304 is nuc

>SFK304F.Seq
ATTTTCATTTTTTCAAAAACACACATTCATTATCATTTAAATAATTTTGTAACTAGTTAC
ATAATAAAAATGTCAAATGCTGCATTACCAAAAACCAAAGTTCTAATTACTGGTGCAACT
GGATTATTAGGAAGAGCATTAATGAAAGTATTTACACAACCACCATTAGAACATATAAAA
TTAGTTGGATTAGGATGGAGTAGATATGAAAAATATGTAAATCAATTTCCAAATGAATTA
AGAAAATTAGATATTACCAATGATTCTGAATTGAGTGAATTTGTTAATGATTTCAAACCA
AACGTTATCATTCATGCAGCAGCTGAAAGAAGACCAGATCAATGTGAAGGTGATAAAGAG
AAAACTCAAAAACTAAATGTTGGTACCACTGAAAAATTGATTGAATTATCTAAATCTGTT
AATGCAACTCTATTTTACATTAGTTCAGATTATGTTTTCGATGGTGAAAACCCACCATAT
GATATTGATGCCAAAACCAACCCATTATCATTTTATGGTAAAACCAAAGAAGAATCTGAG
CAATTAATTATCAAAGCATCCAAAGAATCTGATTCATTTCAAGTATATCATACTTTAGAG
TACCAGTATTGTATGGGTTATGTTGAAAATTTAAAAGAATGGTGCAGTTACAGCAGTCGC
AGA----------