NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFK254
Library SF
(Link to library)
Clone ID SFK254
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16117-1
Original site URL
Representative seq. ID SFK254F
(Link to Original site)
Representative DNA sequence 
>SFK254 (SFK254Q) /CSM/SF/SFK2-C/SFK254Q.Seq.d/
AAAAATTAAATATATATTTAATAATAATGGGTGAATTTTTACAAATTAATGTTCCAGATT
GCCCAAGTGGTTTAAGGATTAATGAATATTTTAGTTATCCATCAATTTCATTAATATTTG
CATCATTATCAATATCGTGTTTTATATTCGCAACGATTATAGCATTTAAATATAACAGTG
TCGATGTTTTCAATAAAAAGATACGAACGCAAACAATATCGAATACATTATGGATCGTTT
ATTATTTAGCATTAGGTTTAAGAGGAGCATCAAATACAATTAGATATGCAATGGATAAAA
CTAGGGAAGAACATGTGGAGGAAGTATTTTTTATAGCAAGTTTAACATTACATGGATTTA
CTGCATTGGCATTGACATTGGCTTTAAATCATCAACGTAGATACAGATCAACATCACAAC
AACAAGCAACTCACAGAGAGAATGAACCATTACTTTTACAACAAATTCAACAAGAGAATA
GAAATTCTTCAAAATGGACTACATCCTTTAAAAAACATATCTCTTTGCTAGAGGTATTTT
TCTTGTTATGTTTTGXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence 
KLNIYLIIMGEFLQINVPDCPSGLRINEYFSYPSISLIFASLSISCFIFATIIAFKYNSV
DVFNKKIRTQTISNTLWIVYYLALGLRGASNTIRYAMDKTREEHVEEVFFIASLTLHGFT
ALALTLALNHQRRYRSTSQQQATHRENEPLLLQQIQQENRNSSKWTTSFKKHISLLEVFF
LLCF---
Translated Amino Acid sequence (All Frames) 
Frame A:
kn*iyi***wvnfyklmfqiaqvv*glmnilvihqfh*ylhhyqyrvlysqrl*hlnitv
smfsikryerkqyrihygsfii*h*v*eehqiqldmqwiklgknmwrkyfl*qv*hymdl
lhwh*hwl*iinvdtdqhhnnkqltermnhyfynkfnkrieilqnglhplknislc*ryf
scyv---


Frame B:
kikyifnnng*iftn*csrlpkwfkd**if*lsinfiniciiinivfyirndysi*i*qc
rcfq*kdtnannieyimdrllfsirfkrsikyn*icng*n*grtcggsifyskfnitwiy
cigidigfksst*iqinitttsnsqre*titfttnstre*kffkmdyil*ktylfargif
lvmf---


Frame C:
KLNIYLIIMGEFLQINVPDCPSGLRINEYFSYPSISLIFASLSISCFIFATIIAFKYNSV
DVFNKKIRTQTISNTLWIVYYLALGLRGASNTIRYAMDKTREEHVEEVFFIASLTLHGFT
ALALTLALNHQRRYRSTSQQQATHRENEPLLLQQIQQENRNSSKWTTSFKKHISLLEVFF
LLCF---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFK254 (SFK254Q) /CSM/SF/SFK2-C/SFK254Q.Seq.d/                       1100   0.0
SSD333 (SSD333Q) /CSM/SS/SSD3-B/SSD333Q.Seq.d/                        444   e-124
SSM583 (SSM583Q) /CSM/SS/SSM5-D/SSM583Q.Seq.d/                         42   0.009
SSM237 (SSM237Q) /CSM/SS/SSM2-B/SSM237Q.Seq.d/                         42   0.009
SSL206 (SSL206Q) /CSM/SS/SSL2-A/SSL206Q.Seq.d/                         42   0.009
SSG245 (SSG245Q) /CSM/SS/SSG2-B/SSG245Q.Seq.d/                         42   0.009
SSF204 (SSF204Q) /CSM/SS/SSF2-A/SSF204Q.Seq.d/                         42   0.009
SSE879 (SSE879Q) /CSM/SS/SSE8-D/SSE879Q.Seq.d/                         42   0.009
SSE447 (SSE447Q) /CSM/SS/SSE4-B/SSE447Q.Seq.d/                         42   0.009
SSC211 (SSC211Q) /CSM/SS/SSC2-A/SSC211Q.Seq.d/                         42   0.009
own update 2002. 7.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ390230) Dictyostelium discoideum cDNA clone:dds21k14, 5' ...  1098   0.0    1
(C92278) Dictyostelium discoideum slug cDNA, clone SSD333.        442   e-120  1
(CR855375) Zebrafish DNA sequence from clone CH211-159E12 in...    34   0.20   2
(AL603715) Zebrafish DNA sequence from clone BUSM1-248F2 Con...    48   0.27   2
(AC112524) Drosophila melanogaster clone RP98-29O22, WORKING...    38   0.34   6
(CR376801) Zebrafish DNA sequence from clone CH211-13K18 in ...    48   0.34   1
(AM486290) Vitis vinifera contig VV78X207646.4, whole genome...    48   0.34   1
(AE014851) Plasmodium falciparum 3D7 chromosome 12, section ...    48   0.34   1
(CT573261) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    48   0.34   1
(AC005140) Plasmodium falciparum chromosome 12 clone 3D7, **...    48   0.34   1
dna update 2008.12.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB126005_1(AB126005|pid:none) Orthetrum triangulare melania mito...    32   8.5
protein update 2009. 1.13
PSORT 

 psg: 0.69  gvh: 0.60  alm: 0.22  top: 0.80  tms: 0.13  mit: 0.14  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 28.0 %: endoplasmic reticulum
	 16.0 %: nuclear
	 16.0 %: vacuolar
	 16.0 %: plasma membrane
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for SFK254 is end
5' end seq. ID SFK254F
5' end seq. 
>SFK254F.Seq
AAAAATTAAATATATATTTAATAATAATGGGTGAATTTTTACAAATTAATGTTCCAGATT
GCCCAAGTGGTTTAAGGATTAATGAATATTTTAGTTATCCATCAATTTCATTAATATTTG
CATCATTATCAATATCGTGTTTTATATTCGCAACGATTATAGCATTTAAATATAACAGTG
TCGATGTTTTCAATAAAAAGATACGAACGCAAACAATATCGAATACATTATGGATCGTTT
ATTATTTAGCATTAGGTTTAAGAGGAGCATCAAATACAATTAGATATGCAATGGATAAAA
CTAGGGAAGAACATGTGGAGGAAGTATTTTTTATAGCAAGTTTAACATTACATGGATTTA
CTGCATTGGCATTGACATTGGCTTTAAATCATCAACGTAGATACAGATCAACATCACAAC
AACAAGCAACTCACAGAGAGAATGAACCATTACTTTTACAACAAATTCAACAAGAGAATA
GAAATTCTTCAAAATGGACTACATCCTTTAAAAAACATATCTCTTTGCTAGAGGTATTTT
TCTTGTTATGTTTTG----------
Length of 5' end seq. 555
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -