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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFK251
Library SF
(Link to library)
Clone ID SFK251
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16397-1
Original site URL
Representative seq. ID SFK251F
(Link to Original site)
Representative DNA sequence 
>SFK251 (SFK251Q) /CSM/SF/SFK2-C/SFK251Q.Seq.d/
TTATTTTAAAATGAGATNTTAGTATTTTTAATATTATTAATTTTTGTAAATTTTTCATTT
GCAAATGTTAGACCAAATGGTAGAAGATTCTCAGAAAGTCAATATAGAACCGCTTTTACT
GAATGGACATTAAAATTCAATAGACAATXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence 
lf*NEXLVFLILLIFVNFSFANVRPNGRRFSESQYRTAFTEWTLKFNRQ---
Translated Amino Acid sequence (All Frames) 
Frame A:
lf*NEXLVFLILLIFVNFSFANVRPNGRRFSESQYRTAFTEWTLKFNRQ---


Frame B:
yfkmrx*yf*yy*fl*ifhlqmldqmvedsqkvnieplllngh*nsid---


Frame C:
ilk*dxsifniinfckffickc*tkw*kilrksi*nrfy*mdikiq*t---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSD528 (SSD528Q) /CSM/SS/SSD5-B/SSD528Q.Seq.d/                        174   2e-43
SLE601 (SLE601Q) /CSM/SL/SLE6-A/SLE601Q.Seq.d/                        174   2e-43
SLD650 (SLD650Q) /CSM/SL/SLD6-C/SLD650Q.Seq.d/                        174   2e-43
SLD609 (SLD609Q) /CSM/SL/SLD6-A/SLD609Q.Seq.d/                        174   2e-43
SFK251 (SFK251Q) /CSM/SF/SFK2-C/SFK251Q.Seq.d/                        174   2e-43
SFA570 (SFA570Q) /CSM/SF/SFA5-C/SFA570Q.Seq.d/                        174   2e-43
CFK280 (CFK280Q) /CSM/CF/CFK2-D/CFK280Q.Seq.d/                        174   2e-43
AFO827 (AFO827Q) /CSM/AF/AFO8-B/AFO827Q.Seq.d/                        174   2e-43
AFM502 (AFM502Q) /CSM/AF/AFM5-A/AFM502Q.Seq.d/                        174   2e-43
AFK758 (AFK758Q) /CSM/AF/AFK7-C/AFK758Q.Seq.d/                        174   2e-43
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(X03344) Dictyostelium discoideum mRNA for cysteine proteina...   174   6e-40  1
(M16039) Dictyostelium discoideum pst-cath gene encoding pst...   174   6e-40  1
(AU072148) Dictyostelium discoideum slug cDNA, clone SSD528.      174   6e-40  1
(AU061543) Dictyostelium discoideum slug cDNA, clone SLE601.      174   6e-40  1
(AU061270) Dictyostelium discoideum slug cDNA, clone SLD650.      174   6e-40  1
(AU061245) Dictyostelium discoideum slug cDNA, clone SLD609.      174   6e-40  1
(BJ390207) Dictyostelium discoideum cDNA clone:dds21e14, 5' ...   174   6e-40  1
(BJ387447) Dictyostelium discoideum cDNA clone:dds2k17, 5' e...   174   6e-40  1
(BJ362475) Dictyostelium discoideum cDNA clone:ddc21o20, 5' ...   174   6e-40  1
(BJ329708) Dictyostelium discoideum cDNA clone:dda26c01, 5' ...   174   6e-40  1
dna update 2008.12.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P04989) RecName: Full=Cysteine proteinase 2;          EC=3.4.22...    65   9e-10
protein update 2009. 1.13
PSORT 

 psg: 0.75  gvh: 0.82  alm: 0.22  top: 0.73  tms: 0.07  mit: 0.31  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.60  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.12  leu: 0.12  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: cytoplasmic
	 24.0 %: mitochondrial
	 24.0 %: nuclear
	  8.0 %: plasma membrane
	  8.0 %: endoplasmic reticulum
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for SFK251 is cyt
5' end seq. ID SFK251F
5' end seq. 
>SFK251F.Seq
TTATTTTAAAATGAGATNTTAGTATTTTTAATATTATTAATTTTTGTAAATTTTTCATTT
GCAAATGTTAGACCAAATGGTAGAAGATTCTCAGAAAGTCAATATAGAACCGCTTTTACT
GAATGGACATTAAAATTCAATAGACAAT----------
Length of 5' end seq. 148
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -