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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFK250
Library SF
(Link to library)
Clone ID SFK250
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16442-1
Original site URL
Representative seq. ID SFK250F
(Link to Original site)
Representative DNA sequence 
>SFK250 (SFK250Q) /CSM/SF/SFK2-C/SFK250Q.Seq.d/
GCGAATTTGTTACGTTGTTGAGCTCATACTAACTTTAAATTAATTTAGTTTTGAGTCTCT
AACAGTATCACTCTGGGAAGAAATGCATAAAGGTCATATAGGAAGAGATGCAACCTATGG
GAACTACAAGACTAAATATTATAATATGGGATTGTATTCTTTTGTATCTGATGCAGTAGA
TACGTGTGACATTTGCCAACGAAATAGAATAAAAGGTATAACAAAGGATTTTGCTCCAAT
TGTAGATACCGAGGAATACTCAAGATTGGTTTATGATTTAACATCAATTAAAGGTGAACA
TAAAGAAAAAGTTACATACGATGATGATAATGAAAAGATACTAACTAAACTAGATGATCT
TATCCAATATGACTCTGTACAACCCGTACGACACCGATGTTGXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence 
ricyvveliltln*FSFESLTVSLWEEMHKGHIGRDATYGNYKTKYYNMGLYSFVSDAVD
TCDICQRNRIKGITKDFAPIVDTEEYSRLVYDLTSIKGEHKEKVTYDDDNEKILTKLDDL
IQYDSVQPVRHRC---
Translated Amino Acid sequence (All Frames) 
Frame A:
anllrc*ahtnfkli*f*vsnsitlgrna*rsyrkrcnlwelqd*il*ygivffci*csr
yv*hlptk*nkrynkgfcsncryrgilkigl*fnin*r*t*rksyir****kdtn*tr*s
ypi*lcttrttpm---


Frame B:
ricyvveliltln*FSFESLTVSLWEEMHKGHIGRDATYGNYKTKYYNMGLYSFVSDAVD
TCDICQRNRIKGITKDFAPIVDTEEYSRLVYDLTSIKGEHKEKVTYDDDNEKILTKLDDL
IQYDSVQPVRHRC---


Frame C:
efvtllssy*l*inlvlsl*qyhsgkkcikvi*eemqpmgttrlniiiwdcillylmq*i
rvtfaneie*kv*qrillql*iprntqdwfmi*hqlkvnikkklhtmmimkry*ln*mil
snmtlynpydtdv---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFK250 (SFK250Q) /CSM/SF/SFK2-C/SFK250Q.Seq.d/                        797   0.0
VHP732 (VHP732Q) /CSM/VH/VHP7-B/VHP732Q.Seq.d/                        781   0.0
VHK446 (VHK446Q) /CSM/VH/VHK4-B/VHK446Q.Seq.d/                        781   0.0
VHC812 (VHC812Q) /CSM/VH/VHC8-A/VHC812Q.Seq.d/                        781   0.0
VHA484 (VHA484Q) /CSM/VH/VHA4-D/VHA484Q.Seq.d/                        781   0.0
VHA123 (VHA123Q) /CSM/VH/VHA1-A/VHA123Q.Seq.d/                        781   0.0
VFL524 (VFL524Q) /CSM/VF/VFL5-A/VFL524Q.Seq.d/                        781   0.0
SHI355 (SHI355Q) /CSM/SH/SHI3-C/SHI355Q.Seq.d/                        781   0.0
SFE560 (SFE560Q) /CSM/SF/SFE5-C/SFE560Q.Seq.d/                        781   0.0
SFE462 (SFE462Q) /CSM/SF/SFE4-C/SFE462Q.Seq.d/                        781   0.0
own update 2002.12. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ390200) Dictyostelium discoideum cDNA clone:dds21c14, 5' ...   795   0.0    1
(BJ329041) Dictyostelium discoideum cDNA clone:dda30f13, 5' ...   761   0.0    2
(BJ395921) Dictyostelium discoideum cDNA clone:dds40n13, 5' ...   761   0.0    2
(BJ417958) Dictyostelium discoideum cDNA clone:ddv31m05, 5' ...   761   0.0    2
(BJ337873) Dictyostelium discoideum cDNA clone:dda59c12, 5' ...   761   0.0    2
(BJ364357) Dictyostelium discoideum cDNA clone:ddc31n08, 5' ...   761   0.0    2
(BJ419431) Dictyostelium discoideum cDNA clone:ddv36h04, 5' ...   761   0.0    2
(BJ418157) Dictyostelium discoideum cDNA clone:ddv31h22, 5' ...   761   0.0    2
(BJ369055) Dictyostelium discoideum cDNA clone:ddc49k05, 5' ...   761   0.0    2
(BJ427449) Dictyostelium discoideum cDNA clone:ddv62p07, 5' ...   761   0.0    2
dna update 2008.12.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U57081_2(U57081|pid:none) Dictyostelium discoideum Tdd-4 transpo...   225   3e-58
U57081_1(U57081|pid:none) Dictyostelium discoideum Tdd-4 transpo...   225   3e-58
AJ893357_41(AJ893357|pid:none) Phytophthora infestans, clone PI-...    40   0.024
AM479657_2(AM479657|pid:none) Vitis vinifera contig VV78X062003....    39   0.042
DQ645742_1(DQ645742|pid:none) Phytophthora sojae transposon Gyps...    39   0.054
AP008212_1155(AP008212|pid:none) Oryza sativa (japonica cultivar...    39   0.071
AC096687_18(AC096687|pid:none) Oryza sativa chromosome 3 BAC OSJ...    38   0.093
M77661_2(M77661|pid:none) Magnaporthe grisea grh retroelement pu...    37   0.21
EU697462_1(EU697462|pid:none) Podospora anserina retrotransposon...    37   0.27
AY095181_1(AY095181|pid:none) Drosophila melanogaster GM07634 fu...    36   0.46
protein update 2009. 5.27
PSORT 

 psg: 0.75  gvh: 0.41  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: endoplasmic reticulum

>> prediction for SFK250 is cyt
5' end seq. ID SFK250F
5' end seq. 
>SFK250F.Seq
GCGAATTTGTTACGTTGTTGAGCTCATACTAACTTTAAATTAATTTAGTTTTGAGTCTCT
AACAGTATCACTCTGGGAAGAAATGCATAAAGGTCATATAGGAAGAGATGCAACCTATGG
GAACTACAAGACTAAATATTATAATATGGGATTGTATTCTTTTGTATCTGATGCAGTAGA
TACGTGTGACATTTGCCAACGAAATAGAATAAAAGGTATAACAAAGGATTTTGCTCCAAT
TGTAGATACCGAGGAATACTCAAGATTGGTTTATGATTTAACATCAATTAAAGGTGAACA
TAAAGAAAAAGTTACATACGATGATGATAATGAAAAGATACTAACTAAACTAGATGATCT
TATCCAATATGACTCTGTACAACCCGTACGACACCGATGTTG----------
Length of 5' end seq. 402
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -