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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFK230
Library SF
(Link to library)
Clone ID SFK230
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11360-1
Original site URL
Representative seq. ID SFK230F
(Link to Original site)
Representative DNA sequence 
>SFK230 (SFK230Q) /CSM/SF/SFK2-B/SFK230Q.Seq.d/
ATTCATTTAATTTTAACCTAAAATATGTTTAAACTTAGTAATCCTTTTAATTATTTAAAT
GATTTTAATTATGCAAAATTCTTATCCTGAGGCTTTTTGGGATGAAGTTGCAAAAAAGAA
TGTTTTTTGGGATAAAATGTATGATAAAGTTTATAGTGGTGATGAAATGTATCCXXXXXX
XXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence 
fi*f*pkiclnlvillii*MILIMQNSYPEAFWDEVAKKNVFWDKMYDKVYSGDEMY---
Translated Amino Acid sequence (All Frames) 
Frame A:
ihlilt*nmfklsnpfnylndfnyakfls*gflg*sckkecflg*nv**sl*w**nv---


Frame B:
fi*f*pkiclnlvillii*MILIMQNSYPEAFWDEVAKKNVFWDKMYDKVYSGDEMY---


Frame C:
sfnfnlkyv*t**sf*lfk*f*lckililrlfgmklqkrmffgikcmikfivvmkci---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFK230 (SFK230Q) /CSM/SF/SFK2-B/SFK230Q.Seq.d/                        345   1e-94
CHH414 (CHH414Q) /CSM/CH/CHH4-A/CHH414Q.Seq.d/                        329   8e-90
AHG676 (AHG676Q) /CSM/AH/AHG6-D/AHG676Q.Seq.d/                        329   8e-90
AFE737 (AFE737Q) /CSM/AF/AFE7-B/AFE737Q.Seq.d/                        329   8e-90
SFI555 (SFI555Q) /CSM/SF/SFI5-C/SFI555Q.Seq.d/                        200   5e-51
CFF293 (CFF293Q) /CSM/CF/CFF2-D/CFF293Q.Seq.d/                        200   5e-51
CHR102 (CHR102Q) /CSM/CH/CHR1-A/CHR102Q.Seq.d/                        170   4e-42
CHB685 (CHB685Q) /CSM/CH/CHB6-D/CHB685Q.Seq.d/                        170   4e-42
CFB284 (CFB284Q) /CSM/CF/CFB2-D/CFB284Q.Seq.d/                        155   3e-37
VHP332 (VHP332Q) /CSM/VH/VHP3-B/VHP332Q.Seq.d/                         96   2e-19
own update 2002.12. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ390169) Dictyostelium discoideum cDNA clone:dds21k08, 5' ...   208   5e-50  1
(BJ365662) Dictyostelium discoideum cDNA clone:ddc36l04, 5' ...   196   2e-46  1
(BJ334015) Dictyostelium discoideum cDNA clone:dda44g20, 5' ...   196   2e-46  1
(BJ323392) Dictyostelium discoideum cDNA clone:dda10j09, 5' ...   196   2e-46  1
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...   109   7e-38  2
(BJ389413) Dictyostelium discoideum cDNA clone:dds18m13, 5' ...   165   6e-37  1
(BJ358901) Dictyostelium discoideum cDNA clone:ddc11i24, 5' ...   165   6e-37  1
(BJ370932) Dictyostelium discoideum cDNA clone:ddc56c01, 5' ...   133   2e-27  1
(BJ363270) Dictyostelium discoideum cDNA clone:ddc25i22, 5' ...   133   2e-27  1
(BJ360020) Dictyostelium discoideum cDNA clone:ddc3g22, 5' e...   125   5e-25  1
dna update 2008.12.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116984_182(AC116984|pid:none) Dictyostelium discoideum chromos...    78   8e-14
AC116984_181(AC116984|pid:none) Dictyostelium discoideum chromos...    66   8e-13
AC116984_184(AC116984|pid:none) Dictyostelium discoideum chromos...    72   5e-12
AC116984_172(AC116984|pid:none) Dictyostelium discoideum chromos...    61   1e-10
AC116984_173(AC116984|pid:none) Dictyostelium discoideum chromos...    58   1e-09
AC116984_180(AC116984|pid:none) Dictyostelium discoideum chromos...    58   4e-09
AC116984_174(AC116984|pid:none) Dictyostelium discoideum chromos...    59   4e-08
AC116984_175(AC116984|pid:none) Dictyostelium discoideum chromos...    55   1e-06
AM910993_215(AM910993|pid:none) Plasmodium knowlesi strain H chr...    37   0.16
AL844505_273(AL844505|pid:none) Plasmodium falciparum 3D7 chromo...    37   0.27
protein update 2009. 5.27
PSORT 

 psg: 0.75  gvh: 0.29  alm: 0.57  top: 0.53  tms: 0.00  mit: 0.19  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for SFK230 is nuc
5' end seq. ID SFK230F
5' end seq. 
>SFK230F.Seq
ATTCATTTAATTTTAACCTAAAATATGTTTAAACTTAGTAATCCTTTTAATTATTTAAAT
GATTTTAATTATGCAAAATTCTTATCCTGAGGCTTTTTGGGATGAAGTTGCAAAAAAGAA
TGTTTTTTGGGATAAAATGTATGATAAAGTTTATAGTGGTGATGAAATGTATCC------
----
Length of 5' end seq. 174
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -