SFK203
Library SF
(Link to library)
Clone ID SFK203
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U07966-1
Original site URL
Representative seq. ID SFK203F
(Link to Original site)
Representative DNA sequence
>SFK203 (SFK203Q) /CSM/SF/SFK2-A/SFK203Q.Seq.d/
CGAGCCAGTGCCATGGTACTCAAATATACCACAAAAAATTAAAAACTCTATGAGTAAAGA
AACAATCACAATTTTAATTTATGTAGTTTTATATGTTACCTCTGGTGTAATCAATAGTGT
TTTATTAAAAAAAGTTATGAACAAATTTACAAATTATGCATTTTTCCTTAGTCAATTGAC
AAATTTTGGTTATGTACCAATTTTTGGAGCAGTAACAGCATATAAGATTTTCTTTACAAA
GGATATCCCGCAAGAAACAAGAGATTTCCCAACACGTAAATTTGCAATTATGGGTGCATT
GGATGCAATTACAGGTTTCTTTGTAGTTATTGGTGGTGTTTCAACATCAGGTCCATTACA
ACAXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence
EPVPWYSNIPQKIKNSMSKETITILIYVVLYVTSGVINSVLLKKVMNKFTNYAFFLSQLT
NFGYVPIFGAVTAYKIFFTKDIPQETRDFPTRKFAIMGALDAITGFFVVIGGVSTSGPLQ
---


Translated Amino Acid sequence (All Frames)
Frame A:
rasamvlkyttkn*klye*rnnhnfnlcsficylwcnq*cfikksyeqiyklcifp*sid
kfwlctnfwssnsi*dflykgyparnkrfpnt*icnygcigcnyrflcsywwcfnirsit
---


Frame B:
EPVPWYSNIPQKIKNSMSKETITILIYVVLYVTSGVINSVLLKKVMNKFTNYAFFLSQLT
NFGYVPIFGAVTAYKIFFTKDIPQETRDFPTRKFAIMGALDAITGFFVVIGGVSTSGPLQ
---


Frame C:
sqchgtqiyhkklktl*vkkqsqf*fm*fymlplv*sivfy*kkl*tnlqimhfslvn*q
ilvmyqfleq*qhirfslqrisrkkqeisqhvnlqlwvhwmqlqvsl*llvvfqhqvhyn
---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFK203 (SFK203Q) /CSM/SF/SFK2-A/SFK203Q.Seq.d/ 589 e-167
SFI892 (SFI892Q) /CSM/SF/SFI8-D/SFI892Q.Seq.d/ 589 e-167
SFI792 (SFI792Q) /CSM/SF/SFI7-D/SFI792Q.Seq.d/ 589 e-167
SLB631 (SLB631Q) /CSM/SL/SLB6-B/SLB631Q.Seq.d/ 379 e-104
VHP613 (VHP613Q) /CSM/VH/VHP6-A/VHP613Q.Seq.d/ 36 0.36
VHN712 (VHN712Q) /CSM/VH/VHN7-A/VHN712Q.Seq.d/ 36 0.36
VHN636 (VHN636Q) /CSM/VH/VHN6-B/VHN636Q.Seq.d/ 36 0.36
VHK506 (VHK506Q) /CSM/VH/VHK5-A/VHK506Q.Seq.d/ 36 0.36
VHH756 (VHH756Q) /CSM/VH/VHH7-C/VHH756Q.Seq.d/ 36 0.36
VHC809 (VHC809Q) /CSM/VH/VHC8-A/VHC809Q.Seq.d/ 36 0.36

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(AF317500) Dictyostelium discoideum strain AX4 putative tran... 456 e-179 3
(BJ390060) Dictyostelium discoideum cDNA clone:dds21e02, 5' ... 456 e-179 3
(BJ389462) Dictyostelium discoideum cDNA clone:dds18h24, 5' ... 456 e-166 2
(BJ389461) Dictyostelium discoideum cDNA clone:dds18h23, 5' ... 456 e-166 2
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 385 e-164 4
(AU060831) Dictyostelium discoideum slug cDNA, clone SLB631. 379 e-101 1
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 68 4e-14 5
(CP000724) Alkaliphilus metalliredigens QYMF, complete genome. 48 0.22 1
(AC119450) Rattus norvegicus clone CH230-196P20, *** SEQUENC... 46 0.87 1
(AC112858) Rattus norvegicus clone CH230-173M21, WORKING DRA... 46 0.87 1
dna update 2008.12.30
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

BX538353_53(BX538353|pid:none) Cryptosporidium parvum chromosome... 69 4e-11
AF233064_1(AF233064|pid:none) Plasmodium falciparum clone DIV30 ... 50 3e-05
DQ156108_1(DQ156108|pid:none) Plasmodium falciparum strain TU741... 49 7e-05
AK176437_1(AK176437|pid:none) Arabidopsis thaliana mRNA, complet... 49 7e-05
AF233066_1(AF233066|pid:none) Plasmodium falciparum isolate NF54... 48 9e-05
AL078637_29(AL078637|pid:none) Arabidopsis thaliana DNA chromoso... 48 9e-05
AF468006_1(AF468006|pid:none) Plasmodium falciparum isolate TM6 ... 48 1e-04
AY651315_1(AY651315|pid:none) Plasmodium falciparum isolate 2300... 47 2e-04
AF030694_8(AF030694|pid:none) Plasmodium falciparum strain Dd2 h... 47 2e-04
AF495376_1(AF495376|pid:none) Plasmodium falciparum clone K1H6/2... 47 2e-04
protein update 2009. 5.27
PSORT

psg: 0.75 gvh: 0.54 alm: 0.27 top: 0.60 tms: 0.13 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 1.00 m_ : 0.00

28.0 %: endoplasmic reticulum
16.0 %: nuclear
16.0 %: vacuolar
16.0 %: plasma membrane
12.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: cytoplasmic

>> prediction for SFK203 is end

5' end seq. ID SFK203F
5' end seq.
>SFK203F.Seq
CGAGCCAGTGCCATGGTACTCAAATATACCACAAAAAATTAAAAACTCTATGAGTAAAGA
AACAATCACAATTTTAATTTATGTAGTTTTATATGTTACCTCTGGTGTAATCAATAGTGT
TTTATTAAAAAAAGTTATGAACAAATTTACAAATTATGCATTTTTCCTTAGTCAATTGAC
AAATTTTGGTTATGTACCAATTTTTGGAGCAGTAACAGCATATAAGATTTTCTTTACAAA
GGATATCCCGCAAGAAACAAGAGATTTCCCAACACGTAAATTTGCAATTATGGGTGCATT
GGATGCAATTACAGGTTTCTTTGTAGTTATTGGTGGTGTTTCAACATCAGGTCCATTACA
ACA----------
Length of 5' end seq. 363
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -