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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFK192
Library SF
(Link to library)
Clone ID SFK192
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11968-1
Original site URL
Representative seq. ID SFK192F
(Link to Original site)
Representative DNA sequence 
>SFK192 (SFK192Q) /CSM/SF/SFK1-D/SFK192Q.Seq.d/
CTTATCCACATANATAAAAATTATNANCATATCAAAGATACCTATAANGACGGAGTCANT
TGTGGTATATTNGAAGCTNCNAATGANAAACATTTTGCTTATGCCAATGGAGTTCTAAAT
TGTGTAACATGGTTCTATCCAAAGTATGATTATGAGACAATGTATGGTGCGCCGCCAGTA
TTATGTTGTGGATATTCGTTTTGGATGACTTTCTTGAACGTGACCATATGACTGATGAAA
AACTACAGTATTGTGTTAAAAAGTATGAAGATATATTAANCTTCTGGTAAAGANAGTCTC
ATATATTNCAAANATTGAATATAATGACTTGACTCCATTNGATANATACTCTNTAATATT
AAGAAAAAGATXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence 
LIHIXKNYXHIKDTYXDGVXCGIXEAXNXKHFAYANGVLNCVTWFYPKYDYETMYGAPPV
LCCGYSFWMTFLNVTI*lmknysivlksmkiy*xsgkxsliyxkx*i**ldsixxilxni
kkk---
Translated Amino Acid sequence (All Frames) 
Frame A:
LIHIXKNYXHIKDTYXDGVXCGIXEAXNXKHFAYANGVLNCVTWFYPKYDYETMYGAPPV
LCCGYSFWMTFLNVTI*lmknysivlksmkiy*xsgkxsliyxkx*i**ldsixxilxni
kkk---


Frame B:
lstxikixxiskipixtesxvvyxklxmxnillmpmef*iv*hgsiqsmimrqcmvrrqy
yvvdirfg*ls*t*pyd**kttvlc*kv*ryixllvkxvsyixxieyndltpxdxysxil
rkr---


Frame C:
yphx*klxxyqryl*xrsxlwyixsxx*xtfclcqwssklcnmvlskv*l*dnvwcaasi
mlwifvlddflerdhmtdeklqycvkkyedilxfw*rxshixqxlnimt*lhxixtl*y*
ek---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFK192 (SFK192Q) /CSM/SF/SFK1-D/SFK192Q.Seq.d/                        640   0.0
SFK244 (SFK244Q) /CSM/SF/SFK2-B/SFK244Q.Seq.d/                        545   e-154
SFC464 (SFC464Q) /CSM/SF/SFC4-C/SFC464Q.Seq.d/                        545   e-154
SFL429 (SFL429Q) /CSM/SF/SFL4-B/SFL429Q.Seq.d/                        537   e-152
SFL403 (SFL403Q) /CSM/SF/SFL4-A/SFL403Q.Seq.d/                        537   e-152
SFK687 (SFK687Q) /CSM/SF/SFK6-D/SFK687Q.Seq.d/                        537   e-152
SFK540 (SFK540Q) /CSM/SF/SFK5-B/SFK540Q.Seq.d/                        537   e-152
SFK279 (SFK279Q) /CSM/SF/SFK2-D/SFK279Q.Seq.d/                        537   e-152
SFI630 (SFI630Q) /CSM/SF/SFI6-B/SFI630Q.Seq.d/                        537   e-152
SFI616 (SFI616Q) /CSM/SF/SFI6-A/SFI616Q.Seq.d/                        537   e-152
own update 2002.10.11
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ390277) Dictyostelium discoideum cDNA clone:dds21g23, 5' ...   640   e-180  1
(BJ390151) Dictyostelium discoideum cDNA clone:dds21g12, 5' ...   228   e-143  3
(BJ387902) Dictyostelium discoideum cDNA clone:dds5p16, 5' e...   228   e-142  3
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...   228   e-141  3
(BJ387499) Dictyostelium discoideum cDNA clone:dds3b05, 5' e...   228   e-141  3
(BJ360722) Dictyostelium discoideum cDNA clone:ddc7d17, 5' e...   228   e-141  3
(BJ387546) Dictyostelium discoideum cDNA clone:dds3c11, 5' e...   228   e-141  3
(BJ387455) Dictyostelium discoideum cDNA clone:dds2o18, 5' e...   228   e-141  3
(BJ391239) Dictyostelium discoideum cDNA clone:dds15c21, 5' ...   228   e-141  3
(BJ390572) Dictyostelium discoideum cDNA clone:dds22m22, 5' ...   228   e-141  3
dna update 2008.12.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117176_25(AC117176|pid:none) Dictyostelium discoideum chromoso...    96   4e-36
protein update 2009. 1.13
PSORT 

 psg: 0.52  gvh: 0.30  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 36.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SFK192 is nuc
5' end seq. ID SFK192F
5' end seq. 
>SFK192F.Seq
CTTATCCACATANATAAAAATTATNANCATATCAAAGATACCTATAANGACGGAGTCANT
TGTGGTATATTNGAAGCTNCNAATGANAAACATTTTGCTTATGCCAATGGAGTTCTAAAT
TGTGTAACATGGTTCTATCCAAAGTATGATTATGAGACAATGTATGGTGCGCCGCCAGTA
TTATGTTGTGGATATTCGTTTTGGATGACTTTCTTGAACGTGACCATATGACTGATGAAA
AACTACAGTATTGTGTTAAAAAGTATGAAGATATATTAANCTTCTGGTAAAGANAGTCTC
ATATATTNCAAANATTGAATATAATGACTTGACTCCATTNGATANATACTCTNTAATATT
AAGAAAAAGAT----------
Length of 5' end seq. 371
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -