SFK184
Library SF
(Link to library)
Clone ID SFK184
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15456-1
Original site URL
Representative seq. ID SFK184F
(Link to Original site)
Representative DNA sequence
>SFK184 (SFK184Q) /CSM/SF/SFK1-D/SFK184Q.Seq.d/
TGATTCAATAAAGGGGAAAATGAAATTNCTTATTTTAACTTTATTTTTAGCTACTATTGT
TTTAGCTNAAGCTTTAACAGTACCATTAAACTTCCATCAAGCTTCAAGAGAATCTAGAAG
AAGAGTTCCACAAAAATGGTCAAACAGATTATCTGCTCTCAATGCTGGTNCCACAATCCC
AATTTCAGATTTTGAAGATGCTCAATACTATGGNGCCATTACCATTGGTACCCCAGGTCA
AGCCTTCAAAGTAGTTTTCGATACTGGTTCATCCAACTTGTGGATTCCATCAAAGAAATG
TCCAATCACTGTTGTTGCATGTGATTTACATAACAAATATAXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence
DSIKGKMKXLILTLFLATIVLAXALTVPLNFHQASRESRRRVPQKWSNRLSALNAGXTIP
ISDFEDAQYYGAITIGTPGQAFKVVFDTGSSNLWIPSKKCPITVVACDLHNKY---


Translated Amino Acid sequence (All Frames)
Frame A:
*fnkgeneixyfnfifsyycfsxsfnstiklpssfkri*kksstkmvkqiicsqcwxhnp
nfrf*rcsilwxhyhwyprsslqssfrywfiqlvdsikemsnhcccm*ft*qi---


Frame B:
DSIKGKMKXLILTLFLATIVLAXALTVPLNFHQASRESRRRVPQKWSNRLSALNAGXTIP
ISDFEDAQYYGAITIGTPGQAFKVVFDTGSSNLWIPSKKCPITVVACDLHNKY---


Frame C:
iq*rgk*nxlf*lyf*lllf*lkl*qyh*tsiklqenleeefhkngqtdyllsmlvpqsq
fqilkmlntmxplplvpqvkpsk*fsilvhptcgfhqrnvqslllhviyitn---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFJ654 (VFJ654Q) /CSM/VF/VFJ6-C/VFJ654Q.Seq.d/ 652 0.0
VFI513 (VFI513Q) /CSM/VF/VFI5-A/VFI513Q.Seq.d/ 652 0.0
VFE752 (VFE752Q) /CSM/VF/VFE7-C/VFE752Q.Seq.d/ 652 0.0
VFC755 (VFC755Q) /CSM/VF/VFC7-C/VFC755Q.Seq.d/ 652 0.0
VFC673 (VFC673Q) /CSM/VF/VFC6-D/VFC673Q.Seq.d/ 652 0.0
VFA504 (VFA504Q) /CSM/VF/VFA5-A/VFA504Q.Seq.d/ 652 0.0
SFK184 (SFK184Q) /CSM/SF/SFK1-D/SFK184Q.Seq.d/ 652 0.0
SFK136 (SFK136Q) /CSM/SF/SFK1-B/SFK136Q.Seq.d/ 652 0.0
SFJ379 (SFJ379Q) /CSM/SF/SFJ3-D/SFJ379Q.Seq.d/ 652 0.0
SFJ334 (SFJ334Q) /CSM/SF/SFJ3-B/SFJ334Q.Seq.d/ 652 0.0

own update 2001.11.27
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ414855) Dictyostelium discoideum cDNA clone:ddv20k14, 5' ... 652 0.0 1
(BJ414112) Dictyostelium discoideum cDNA clone:ddv18i03, 5' ... 652 0.0 1
(BJ412037) Dictyostelium discoideum cDNA clone:ddv6a20, 5' e... 652 0.0 1
(BJ412024) Dictyostelium discoideum cDNA clone:ddv6n13, 5' e... 652 0.0 1
(BJ410841) Dictyostelium discoideum cDNA clone:ddv2g01, 5' e... 652 0.0 1
(BJ409929) Dictyostelium discoideum cDNA clone:ddv10h13, 5' ... 652 0.0 1
(BJ391303) Dictyostelium discoideum cDNA clone:dds13i02, 5' ... 652 0.0 1
(BJ391297) Dictyostelium discoideum cDNA clone:dds13e06, 5' ... 652 0.0 1
(BJ391164) Dictyostelium discoideum cDNA clone:dds15l08, 5' ... 652 0.0 1
(BJ391091) Dictyostelium discoideum cDNA clone:dds15d05, 5' ... 652 0.0 1
dna update 2008.12.29
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q03168) RecName: Full=Lysosomal aspartic protease; EC=... 100 2e-20
EF213114_1(EF213114|pid:none) Penaeus monodon cathepsin D mRNA, ... 95 6e-19
AB218595_1(AB218595|pid:none) Haemaphysalis longicornis AP mRNA ... 93 3e-18
DQ010007_1(DQ010007|pid:none) Bombyx mori CathD mRNA, complete c... 91 9e-18
AB106552_1(AB106552|pid:none) Todarodes pacificus tpaD mRNA for ... 91 1e-17
EF193385_1(EF193385|pid:none) Musca domestica aspartic proteinas... 90 2e-17
BT080419_1(BT080419|pid:none) Caligus clemensi clone ccle-evs-50... 89 6e-17
AF454831_1(AF454831|pid:none) Apriona germari cathepsin D mRNA, ... 87 2e-16
AY113207_1(AY113207|pid:none) Drosophila melanogaster AT05209 fu... 86 3e-16
AJ417035_1(AJ417035|pid:none) Pleurotus ostreatus partial mRNA f... 86 4e-16
protein update 2009. 5.27
PSORT

psg: 0.97 gvh: 0.73 alm: 0.47 top: 0.63 tms: 0.00 mit: 0.28 mip: 0.09
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

28.0 %: extracellular, including cell wall
24.0 %: mitochondrial
16.0 %: cytoplasmic
12.0 %: nuclear
8.0 %: vacuolar
4.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: endoplasmic reticulum

>> prediction for SFK184 is exc

5' end seq. ID SFK184F
5' end seq.
>SFK184F.Seq
TGATTCAATAAAGGGGAAAATGAAATTNCTTATTTTAACTTTATTTTTAGCTACTATTGT
TTTAGCTNAAGCTTTAACAGTACCATTAAACTTCCATCAAGCTTCAAGAGAATCTAGAAG
AAGAGTTCCACAAAAATGGTCAAACAGATTATCTGCTCTCAATGCTGGTNCCACAATCCC
AATTTCAGATTTTGAAGATGCTCAATACTATGGNGCCATTACCATTGGTACCCCAGGTCA
AGCCTTCAAAGTAGTTTTCGATACTGGTTCATCCAACTTGTGGATTCCATCAAAGAAATG
TCCAATCACTGTTGTTGCATGTGATTTACATAACAAATATA----------
Length of 5' end seq. 341
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -