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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFK164
Library SF
(Link to library)
Clone ID SFK164
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16527-1
Original site URL
Representative seq. ID SFK164F
(Link to Original site)
Representative DNA sequence 
>SFK164 (SFK164Q) /CSM/SF/SFK1-C/SFK164Q.Seq.d/
TAACTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCT
AAGTATAAATTCTTGTACGATGAAACTGCAGACGGCTCATTACAACAGTGATAAACTAAT
AGACTTTCGGGTTTTACCTTTTGGATAACCGCAGTAAATCGGGGCTAATACATACAAGCG
ATGGGTGACTGGCAACGGAAGCTCAGCGATTATTAGCATTCTACCAATGCCTTCGGGTTT
TGGGTGATACCGAATAATATTGCAGATCGAGGATTTATCTTCGACAAGTCTACTGTGTCA
CTGCCCTATCAACTTTCGATGGTACGGTATTGGCCTACCATGGTTGTAACGGGTAACGGG
GAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAATGGCTACCACTTCTACGGAAGGC
AGCAGGCGCGCAAATTACTCAATCCCAATACGGGGAAGTAGTGACAATAAATATCAATAC
CTATCCTTTTTGGAGGGCAATTGAAATGAACACAAATTAAAACTCTTAATTAACACAATT
GGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCATATAGTTAAA
CCATCACACTCAACTACAACAACAACAACAACAAGTAGACCAGCGTCAACAATTGTXXXX
XXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence 
*lvdpasshmlvskikpcmskykflydetadgslqq**tnrlsgftfwitavnrg*yiqa
mgdwqrklsdy*HSTNAFGFWVIPNNIADRGFIFDKSTVSLPYQLSMVRYWPTMVVTGNG
ELGFDSGEGA*emattstegsrranysipirgssdnkyqylsflegn*nehklkllinti
ggqvwcqqpr*fqlq*hivkpshstttttttsrpasti---
Translated Amino Acid sequence (All Frames) 
Frame A:
*lvdpasshmlvskikpcmskykflydetadgslqq**tnrlsgftfwitavnrg*yiqa
mgdwqrklsdy*HSTNAFGFWVIPNNIADRGFIFDKSTVSLPYQLSMVRYWPTMVVTGNG
ELGFDSGEGA*emattstegsrranysipirgssdnkyqylsflegn*nehklkllinti
ggqvwcqqpr*fqlq*hivkpshstttttttsrpasti---


Frame B:
nwlilpvviclsqrlshaclsinsctmklqtahynsdklidfrvlpfg*pq*igantykr
wvtgngssaiisilpmpsgfg*yriilqiedlsstsllchcpinfrwygiglpwl*rvtg
n*gsiperepekwlpllrkaagaqitqsqygevvtinintypfwraiemntn*ns*ltql
egksgassrgnsssnsi*lnhhtqlqqqqqqvdqrqql---


Frame C:
tg*scq*syaclkd*amhv*v*ilvr*ncrrlittvin**tfgfylldnrsksglihtsd
g*lateaqrllafyqclrvlgdte*ycrsriylrqvycvtalstfdgtvlayhgcng*rg
irvrfrrgslrngyhfygrqqarkllnpntgk**q*isipilfggqlk*tqiktln*hnw
raslvpaaavipapiays*titlnynnnnnk*tsvnn---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFK164 (SFK164Q) /CSM/SF/SFK1-C/SFK164Q.Seq.d/                       1219   0.0
SFK216 (SFK216Q) /CSM/SF/SFK2-A/SFK216Q.Seq.d/                       1205   0.0
VHG238 (VHG238Q) /CSM/VH/VHG2-B/VHG238Q.Seq.d/                       1172   0.0
VHE381 (VHE381Q) /CSM/VH/VHE3-D/VHE381Q.Seq.d/                       1172   0.0
VFG294 (VFG294Q) /CSM/VF/VFG2-D/VFG294Q.Seq.d/                       1172   0.0
CHO248 (CHO248Q) /CSM/CH/CHO2-B/CHO248Q.Seq.d/                       1164   0.0
CHM837 (CHM837Q) /CSM/CH/CHM8-B/CHM837Q.Seq.d/                       1164   0.0
CHG692 (CHG692Q) /CSM/CH/CHG6-D/CHG692Q.Seq.d/                       1164   0.0
CHI773 (CHI773Q) /CSM/CH/CHI7-D/CHI773Q.Seq.d/                       1156   0.0
AHH496 (AHH496Q) /CSM/AH/AHH4-D/AHH496Q.Seq.d/                       1156   0.0
own update 2002.12. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ390246) Dictyostelium discoideum cDNA clone:dds21o15, 5' ...  1219   0.0    2
(AY171066) Dictyostelium discoideum extrachromosomal palindr...  1178   0.0    1
(AM168071) Dictyostelium discoideum 18S rRNA gene, isolate NC4.  1172   0.0    1
(AM168040) Dictyostelium discoideum 18S rRNA gene, isolate 9...  1172   0.0    1
(BJ421651) Dictyostelium discoideum cDNA clone:ddv43k10, 5' ...  1172   0.0    1
(BJ420580) Dictyostelium discoideum cDNA clone:ddv39b21, 5' ...  1172   0.0    1
(BJ413027) Dictyostelium discoideum cDNA clone:ddv13k24, 5' ...  1172   0.0    1
(K02641) Slime mold (D.discoideum) 17S small subunit ribosom...  1170   0.0    1
(DQ340385) Dictyostelium citrinum 17S ribosomal RNA, 5.8S ri...  1170   0.0    1
(X00134) Dictyostelium discoideum 17S rRNA sequence.             1166   0.0    1
dna update 2008.12.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU979522_1(EU979522|pid:none) Ornithoctonus huwena clone HWEco7 ...    59   2e-07
EF575814_1(EF575814|pid:none) Oryza sativa (indica cultivar-grou...    33   7.4
protein update 2009. 1.13
PSORT 

 psg: 0.93  gvh: 0.36  alm: 0.49  top: 0.43  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: endoplasmic reticulum
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: plasma membrane

>> prediction for SFK164 is cyt
5' end seq. ID SFK164F
5' end seq. 
>SFK164F.Seq
TAACTGGTTGATCCTGCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTCT
AAGTATAAATTCTTGTACGATGAAACTGCAGACGGCTCATTACAACAGTGATAAACTAAT
AGACTTTCGGGTTTTACCTTTTGGATAACCGCAGTAAATCGGGGCTAATACATACAAGCG
ATGGGTGACTGGCAACGGAAGCTCAGCGATTATTAGCATTCTACCAATGCCTTCGGGTTT
TGGGTGATACCGAATAATATTGCAGATCGAGGATTTATCTTCGACAAGTCTACTGTGTCA
CTGCCCTATCAACTTTCGATGGTACGGTATTGGCCTACCATGGTTGTAACGGGTAACGGG
GAATTAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAATGGCTACCACTTCTACGGAAGGC
AGCAGGCGCGCAAATTACTCAATCCCAATACGGGGAAGTAGTGACAATAAATATCAATAC
CTATCCTTTTTGGAGGGCAATTGAAATGAACACAAATTAAAACTCTTAATTAACACAATT
GGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCATATAGTTAAA
CCATCACACTCAACTACAACAACAACAACAACAAGTAGACCAGCGTCAACAATTGT----
------
Length of 5' end seq. 656
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -