SFJ891
Library SF
(Link to library)
Clone ID SFJ891
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11012-1
Original site URL
Representative seq. ID SFJ891Z
(Link to Original site)
Representative DNA sequence
>SFJ891 (SFJ891Q) /CSM/SF/SFJ8-D/SFJ891Q.Seq.d/
XXXXXXXXXXGCTGCAACTGGTGCATTTTTAATGTTTTATGTTGTTTTATGTAAAACAGG
ACCAATTTATAAACAAATTGATTCATTACCATTAATAATTTTATTATTAAAATTATCATT
ACCATCAATGAGTTTATGGATGTTAGGATTTTATGGAGTATTTCATTGTTTATTGAATAT
ATTTGCAGAAGTAACAAGATATGCAGATCGTGAATTTTATCAAGATTGGTGGAATGCTAC
AACTTTTGATATGTGGTGGAGAAAATGGAATAGACCAGTTCATAAATGGATGTTACGTCA
TGTATATAGAGATTCAATGCACACTGTAAAATTAAATAAATTTGGTGCACTATTTTCAAC
TTTTCTATTATCAGCATTACTTCATGAATTTGTAATGATCATATCATTTAGATTCATTAG
ACCAATTTTATCAACAACAATGTTATTACAAATTGGTTTAGTAAATTTCACACAATTAGA
TATTTTACAAAAAACCAGATTTGGTAATGTTGTAATGTGGATAACTGTATTCGTAGGTCA
ACCTCTTGTTCAATTATTATATTCAACTCAATACAGTGCTTTAGTTGGAATAAGGTCCAT
AAAAAAAGTTGGAATAAAGTCAATAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence
---ATGAFLMFYVVLCKTGPIYKQIDSLPLIILLLKLSLPSMSLWMLGFYGVFHCLLNIF
AEVTRYADREFYQDWWNATTFDMWWRKWNRPVHKWMLRHVYRDSMHTVKLNKFGALFSTF
LLSALLHEFVMIISFRFIRPILSTTMLLQIGLVNFTQLDILQKTRFGNVVMWITVFVGQP
LVQLLYSTQYSALVGIRSIKKVGIKSI


Translated Amino Acid sequence (All Frames)
Frame A:
---lqlvhf*cfmlfyvkqdqfinklihyh**fyy*nyhyhq*vygc*dfmeyfivy*iy
lqk*qdmqivnfikiggmlqllicggengidqfingcyvmyieiqctl*n*inlvhyfql
fyyqhyfmnl**syhldsldqfyqqqcyyklv**ishn*ifykkpdlvml*cg*lys*vn
llfnyyiqlntvl*le*gp*kkle*sq*


Frame B:
---cnwcifnvlccfm*nrtnl*tn*fitinnfiikiiitinefmdvrilwsislfieyi
crsnkicrs*ilsrlvecynf*yvvekme*tss*mdvtsci*rfnahckik*iwctifnf
siisits*icndhii*ih*tnfinnnvitnwfskfhtiryftknqiw*ccnvdncirrst
scsiiifnsiqcfswnkvhkkswnkvnk


Frame C:
---ATGAFLMFYVVLCKTGPIYKQIDSLPLIILLLKLSLPSMSLWMLGFYGVFHCLLNIF
AEVTRYADREFYQDWWNATTFDMWWRKWNRPVHKWMLRHVYRDSMHTVKLNKFGALFSTF
LLSALLHEFVMIISFRFIRPILSTTMLLQIGLVNFTQLDILQKTRFGNVVMWITVFVGQP
LVQLLYSTQYSALVGIRSIKKVGIKSI


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFJ891 (SFJ891Q) /CSM/SF/SFJ8-D/SFJ891Q.Seq.d/ 1181 0.0
AFK391 (AFK391Q) /CSM/AF/AFK3-D/AFK391Q.Seq.d/ 1142 0.0
AFI702 (AFI702Q) /CSM/AF/AFI7-A/AFI702Q.Seq.d/ 1142 0.0
AFL533 (AFL533Q) /CSM/AF/AFL5-B/AFL533Q.Seq.d/ 825 0.0
SSC678 (SSC678Q) /CSM/SS/SSC6-D/SSC678Q.Seq.d/ 803 0.0
SLD465 (SLD465Q) /CSM/SL/SLD4-C/SLD465Q.Seq.d/ 755 0.0
VHH175 (VHH175Q) /CSM/VH/VHH1-D/VHH175Q.Seq.d/ 42 0.010
SSL884 (SSL884Q) /CSM/SS/SSL8-D/SSL884Q.Seq.d/ 40 0.040
SSH476 (SSH476Q) /CSM/SS/SSH4-D/SSH476Q.Seq.d/ 40 0.040
SLE654 (SLE654Q) /CSM/SL/SLE6-C/SLE654Q.Seq.d/ 40 0.040

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

(BJ402201) Dictyostelium discoideum cDNA clone:dds20f24, 3' ... 1168 0.0 2
(BJ345163) Dictyostelium discoideum cDNA clone:dda21f23, 3' ... 1140 0.0 1
(BJ344289) Dictyostelium discoideum cDNA clone:dda18d01, 3' ... 1140 0.0 1
(BJ346527) Dictyostelium discoideum cDNA clone:dda24a09, 3' ... 825 0.0 1
(C85038) Dictyostelium discoideum slug cDNA, clone SSC678. 803 0.0 1
(AU052522) Dictyostelium discoideum slug cDNA, clone SLD465. 755 0.0 1
(CV090396) CA1362 cDNA cold acclimated Bluecrop library Vacc... 46 3e-08 2
(EL364803) CCEM9322.b1_D03.ab1 CCE(LMS) endive Cichorium end... 58 1e-07 2
(EF653276) Vernonia galamensis type 1 diaclyglycerol acyltra... 56 5e-07 2
(EL379992) CFFM17185.b1_B02.ab1 CFF(LMS) safflower Carthamus... 48 1e-04 2
dna update 2008.12.29
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AE017346_115(AE017346|pid:none) Cryptococcus neoformans var. neo... 116 4e-25
(Q10269) RecName: Full=Probable sterol O-acyltransferase 1; ... 114 2e-24
AY562995_1(AY562995|pid:none) Toxoplasma gondii acyl-CoA:cholest... 114 3e-24
AM920428_546(AM920428|pid:none) Penicillium chrysogenum Wisconsi... 111 2e-23
AB062759_1(AB062759|pid:none) Rattus norvegicus DGAT mRNA for di... 108 2e-22
BC169163_1(BC169163|pid:none) Xenopus tropicalis cDNA clone MGC:... 106 6e-22
AY858584_1(AY858584|pid:none) Oryza sativa (japonica cultivar-gr... 105 8e-22
(P53629) RecName: Full=Sterol O-acyltransferase 2; EC=2... 105 1e-21
AF221132_1(AF221132|pid:none) Caenorhabditis elegans diacylglyce... 105 1e-21
T19027(T19027;T23106) probable sterol O-acyltransferase (EC 2.3.... 105 1e-21
protein update 2009. 5.27
PSORT

psg: 0.97 gvh: 0.67 alm: 0.31 top: 0.40 tms: 0.20 mit: 0.21 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

40.0 %: endoplasmic reticulum
20.0 %: mitochondrial
12.0 %: plasma membrane
8.0 %: extracellular, including cell wall
4.0 %: Golgi
4.0 %: nuclear
4.0 %: cytoplasmic
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for SFJ891 is end

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SFJ891Z
3' end seq.
>SFJ891Z.Seq
----------GCTGCAACTGGTGCATTTTTAATGTTTTATGTTGTTTTATGTAAAACAGG
ACCAATTTATAAACAAATTGATTCATTACCATTAATAATTTTATTATTAAAATTATCATT
ACCATCAATGAGTTTATGGATGTTAGGATTTTATGGAGTATTTCATTGTTTATTGAATAT
ATTTGCAGAAGTAACAAGATATGCAGATCGTGAATTTTATCAAGATTGGTGGAATGCTAC
AACTTTTGATATGTGGTGGAGAAAATGGAATAGACCAGTTCATAAATGGATGTTACGTCA
TGTATATAGAGATTCAATGCACACTGTAAAATTAAATAAATTTGGTGCACTATTTTCAAC
TTTTCTATTATCAGCATTACTTCATGAATTTGTAATGATCATATCATTTAGATTCATTAG
ACCAATTTTATCAACAACAATGTTATTACAAATTGGTTTAGTAAATTTCACACAATTAGA
TATTTTACAAAAAACCAGATTTGGTAATGTTGTAATGTGGATAACTGTATTCGTAGGTCA
ACCTCTTGTTCAATTATTATATTCAACTCAATACAGTGCTTTAGTTGGAATAAGGTCCAT
AAAAAAAGTTGGAATAAAGTCAATAAA
Length of 3' end seq. 617
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -