>SFJ819 (SFJ819Q) /CSM/SF/SFJ8-A/SFJ819Q.Seq.d/
ACACACACAATAAACAAATGATATATTAAATAATTGTAATAGTAATAAAAATAATAATAA
AAATAATAATAAAAATAATAATAGTAATAGCATAATAATGAACAATAAATATTATTCAAT
AGTTTTAATGATATTTATAATTTTATTAAAAATAAAATTTAACAAAAGTTATACAACACA
TTATAATGTTAAAACAATATTAAGATATGCAGATAATCATGAAGATACATTTCTATGGGC
AAGTAATCAAACTGCATGGGATAGAGATTGGAAGAATAAAATTGGTATTGTTTCAGTTGA
TACATGTCCATTTGTAAAATCAGTACTGATTCCAAAAGAGAATACATTCTATTGTGTATT
ACCTTACAATGATTTAGACCAATTTGGTAGAAAAGCAAATGCATATCAAATTCCATGGGC
CACATCCTCAGATCCTGATGAATATTCAATATTAAAGAATCGATGGATTAAAGTATCCCA
TAAGGATGCGATGGCATTCTGCCAATATGAAGACGTGGGTCCTCAATACGATGATGATTT
CTCXXXXXXXXXX

htq*TNDILNNCNSNKNNNKNNNKNNNSNSIIMNNKYYSIVLMIFIILLKIKFNKSYTTH
YNVKTILRYADNHEDTFLWASNQTAWDRDWKNKIGIVSVDTCPFVKSVLIPKENTFYCVL
PYNDLDQFGRKANAYQIPWATSSDPDEYSILKNRWIKVSHKDAMAFCQYEDVGPQYDDDF
---

Frame A:
thtink*yik*l****k***k***k*****hnneq*ilfnsfndiynfiknki*qklynt
l*c*nnikicr*s*ryismgk*sncmg*rlee*nwycfs*ymsickistdskreyillci
tlq*frpiw*kskcisnsmghilrs**ifnikesmd*sip*gcdgilpi*rrgssir**f
---


Frame B:
htq*TNDILNNCNSNKNNNKNNNKNNNSNSIIMNNKYYSIVLMIFIILLKIKFNKSYTTH
YNVKTILRYADNHEDTFLWASNQTAWDRDWKNKIGIVSVDTCPFVKSVLIPKENTFYCVL
PYNDLDQFGRKANAYQIPWATSSDPDEYSILKNRWIKVSHKDAMAFCQYEDVGPQYDDDF
---


Frame C:
thnkqmiy*iivivikiiikiiikiiivia***tiniiq*f**yl*fy*k*nltkviqhi
imlkqy*dmqiimkihfygqviklhgieigriklvlfqlihvhl*nqy*fqkrihsivyy
ltmi*tnlvekqmhikfhgphpqilmniqy*ridglkypirmrwhsanmktwvlntmmis
---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFJ819 (SFJ819Q) /CSM/SF/SFJ8-A/SFJ819Q.Seq.d/                        856   0.0
VSB509 (VSB509Q) /CSM/VS/VSB5-A/VSB509Q.Seq.d/                         40   0.035
SSG325 (SSG325Q) /CSM/SS/SSG3-B/SSG325Q.Seq.d/                         40   0.035
SFJ401 (SFJ401Q) /CSM/SF/SFJ4-A/SFJ401Q.Seq.d/                         40   0.035
AFN356 (AFN356Q) /CSM/AF/AFN3-C/AFN356Q.Seq.d/                         40   0.035
AFJ611 (AFJ611Q) /CSM/AF/AFJ6-A/AFJ611Q.Seq.d/                         40   0.035
AFI561 (AFI561Q) /CSM/AF/AFI5-C/AFI561Q.Seq.d/                         40   0.035
VSE287 (VSE287Q) /CSM/VS/VSE2-D/VSE287Q.Seq.d/                         38   0.14
VSC274 (VSC274Q) /CSM/VS/VSC2-D/VSC274Q.Seq.d/                         38   0.14
VFK728 (VFK728Q) /CSM/VF/VFK7-B/VFK728Q.Seq.d/                         38   0.14

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    46   4e-05  10
AX346610|AX346610.1 Sequence 1681 from Patent WO0200928.           46   2e-04  2
AE014824|AE014824.1 Plasmodium falciparum 3D7 chromosome 14 section 9 of 13 of the complete sequence.    42   4e-04  10
AE017338|AE017338.1 Mycoplasma mobile 163K section 2 of 3 of the complete genome.    34   8e-04  9
BX510931|BX510931.8 Zebrafish DNA sequence from clone CH211-132M19 in linkage group 21.    36   0.001  5
AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence.    38   0.002  9
BX005095|BX005095.6 Zebrafish DNA sequence from clone CH211-189B21.    42   0.002  6
AC022659|AC022659.5 Homo sapiens clone RP11-29G21, WORKING DRAFT SEQUENCE, 6 unordered pieces.    36   0.002  7
AX345330|AX345330.1 Sequence 401 from Patent WO0200928.            46   0.003  2
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome.    38   0.004  11

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001071_1057(CP001071|pid:none) Akkermansia muciniphila ATCC BA...    63   6e-09
CP001341_3510(CP001341|pid:none) Arthrobacter chlorophenolicus A...    53   6e-06
CP000975_1471(CP000975|pid:none) Methylacidiphilum infernorum V4...    51   2e-05
CP000454_1226(CP000454|pid:none) Arthrobacter sp. FB24, complete...    47   4e-04
CP000975_358(CP000975|pid:none) Methylacidiphilum infernorum V4,...    46   7e-04
(A7TGU7) RecName: Full=ATP-dependent RNA helicase DHH1;         ...    33   3.7
A97093(A97093) probable membrane protein [imported] - Clostridiu...    33   4.9

 psg: 0.75  gvh: 0.35  alm: 0.29  top: 0.70  tms: 0.07  mit: 0.40  mip: 0.11
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.03  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 52.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for SFJ819 is nuc

>SFJ819F.Seq
ACACACACAATAAACAAATGATATATTAAATAATTGTAATAGTAATAAAAATAATAATAA
AAATAATAATAAAAATAATAATAGTAATAGCATAATAATGAACAATAAATATTATTCAAT
AGTTTTAATGATATTTATAATTTTATTAAAAATAAAATTTAACAAAAGTTATACAACACA
TTATAATGTTAAAACAATATTAAGATATGCAGATAATCATGAAGATACATTTCTATGGGC
AAGTAATCAAACTGCATGGGATAGAGATTGGAAGAATAAAATTGGTATTGTTTCAGTTGA
TACATGTCCATTTGTAAAATCAGTACTGATTCCAAAAGAGAATACATTCTATTGTGTATT
ACCTTACAATGATTTAGACCAATTTGGTAGAAAAGCAAATGCATATCAAATTCCATGGGC
CACATCCTCAGATCCTGATGAATATTCAATATTAAAGAATCGATGGATTAAAGTATCCCA
TAAGGATGCGATGGCATTCTGCCAATATGAAGACGTGGGTCCTCAATACGATGATGATTT
CTC----------