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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFJ818
Library SF
(Link to library)
Clone ID SFJ818
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16317-1
Original site URL
Representative seq. ID SFJ818P
(Link to Original site)
Representative DNA sequence 
>SFJ818 (SFJ818Q) /CSM/SF/SFJ8-A/SFJ818Q.Seq.d/
AACACATAAATAATATTTATCTATCTATCCACACACCCAAAGTATTCATATTAATGGCAG
AAATAACAATATCAATTGAAAATGAAAATTTCATTCAAGTAAATTTACAACCAGATCAAA
CAGTTGAAGATCTAAAACGTAGAGTAGAATTTGAAACCACAATTTTAGTGAACAATCAAG
TTTTAACACTTGATGGAAAAGTATTAGATAATGAAAAGAAATTATCAGACTATTCAATTA
AAGGTGGTGATTTCTTATTGATAACAAAAAATGTTTTAAGAGCACCACAACAAAGATCAC
AACAACCCCAACAACCACAACAACCACAACAACCACAACAACAACGTCAACCACAAAGAG
ATCCTCTCAATTCACCACAAGATATTTTAGACCACTTTACAAACAATCCTGAAGACTTAA
CTCAAGTTATAAATTCAAATCCAGCATTAGCAAATGCAATCTTAAGTAAAGATATGAAAT
TCCTTACTCACTTTGTAGAACAAATCAAAGAACAACGTCGTATTCAAGAATTGGCATTAA
AAGATCCATATGGTGAAGAGTATCAAAAATTAGCTTATCAACATATTCAACAACAAAATA
TTGAAAAAAATATGCAACATGCTATGGAAXXXXXXXXXXTGCNGAAAGATGNGAAATTTC
AAGAATTATTGATNNTAGATTTCATGGTATTGNTAAAGGTGTGGGTACATCAAAAATTAT
AGGTAGAGTTCATAGTACAGACTTAAAACTTGGCAACTCTTTATTCTCTGTATCATTATC
TATCCTTCAAAATCAAGATGTTGACTTCATCCTTGGTTTGGATATGTTAAAGCGTCATCA
AGTCATTTTGGATTTAAATAGAGGTGTATTACAAATTGCAAATGAAAAGATTGAATTCCT
TCATGAAAAAGATTTAAAGGAGATTTTAAATAAAGAACAAAATGATTTAGAAGAAGATAC
TAAAAAAGCAACTGCTAATAGTCTTTCACCTTCAACAACTTCAACCACTTACCACTACCA
CTACCACTACTTCACCCCAAACTCCAACTAATGCCACTTCTCCTGTAAATAATAATAATA
ATAATAATAACAACAACAACAACACTAGACCTCCAATTAATTCACCACCAGTTGCAAAGA
CACCGCAACCAACACCACAACCAACTACAAATCAATATGCTTCTGAATCCAATATCCAAA
CCCTTATTGGACTTGGTTGTTCAAGAGATAAGGCAATTAGACTTTTAACTCAAGCTAAAG
GCAATGTTGATGTTG
sequence update 2001. 6. 1
Translated Amino Acid sequence 
HINNIYLSIHTPKVFILMAEITISIENENFIQVNLQPDQTVEDLKRRVEFETTILVNNQV
LTLDGKVLDNEKKLSDYSIKGGDFLLITKNVLRAPQQRSQQPQQPQQPQQPQQQRQPQRD
PLNSPQDILDHFTNNPEDLTQVINSNPALANAILSKDMKFLTHFVEQIKEQRRIQELALK
DPYGEEYQKLAYQHIQQQNIEKNMQHAME---

---AERXEISRIIDXRFHGIXKGVGTSKIIGRVHSTDLKLGNSLFSVSLSILQNQDVDFI
LGLDMLKRHQVILDLNRGVLQIANEKIEFLHEKDLKEILNKEQNDLEEDTKKATANSLSP
STTSTTYHYHYHYFTPNSN*chfsck*******qqqqh*tsn*fttsckdtatntttnyk
sicf*iqypnpywtwlfkr*gn*tfnss*rqc*c
Translated Amino Acid sequence (All Frames) 
Frame A:
nt*iifiylsthpkysy*wqk*qyqlkmkisfk*iynqikqlki*nve*nlkpqf**tik
f*hlmeky*imkrnyqtiqlkvvisy**qkmf*ehhnkdhnnpnnhnnhnnhnnnvnhke
ilsihhkif*ttlqtilkt*lkl*iqiqh*qmqs*vki*nslltl*nksknnvvfknwh*
kihmvksikn*linifnnkilkkicnmlw---

---cxkmxnfkny*x*iswyx*rcgyiknyr*ss*yrlktwqlfilciiiypsksrc*lh
pwfgyvkassshfgfk*rcitnck*kd*ips*krfkgdfk*rtk*frrry*ksnc**sft
fnnfnhlplplpllhpklqlmplll*iiiiiiitttttldlqlihhqlqrhrnqhhnqlq
inmllnpiskplldlvvqeirqldf*lklkamlml

Frame B:
thk*ylsiyphtqsihingrnnnin*k*kfhsskfttrsns*rskt*sri*nhnfseqss
fnt*wksir**keiirlfn*rw*flidnkkcfkstttkitttpttttttttttttsttkr
ssqfttryfrplykqs*rlnssykfkssiskcnlk*ryeipyslcrtnqrttsysrigik
rsiw*rvskislstysttky*kkyatcyg---

---AERXEISRIIDXRFHGIXKGVGTSKIIGRVHSTDLKLGNSLFSVSLSILQNQDVDFI
LGLDMLKRHQVILDLNRGVLQIANEKIEFLHEKDLKEILNKEQNDLEEDTKKATANSLSP
STTSTTYHYHYHYFTPNSN*chfsck*******qqqqh*tsn*fttsckdtatntttnyk
sicf*iqypnpywtwlfkr*gn*tfnss*rqc*c

Frame C:
HINNIYLSIHTPKVFILMAEITISIENENFIQVNLQPDQTVEDLKRRVEFETTILVNNQV
LTLDGKVLDNEKKLSDYSIKGGDFLLITKNVLRAPQQRSQQPQQPQQPQQPQQQRQPQRD
PLNSPQDILDHFTNNPEDLTQVINSNPALANAILSKDMKFLTHFVEQIKEQRRIQELALK
DPYGEEYQKLAYQHIQQQNIEKNMQHAME---

---xkdxkfqellxxdfmvlxkvwvhqkl*vefivqt*nlatlyslyhylsfkikmltss
lvwic*sviksfwi*ievyyklqmkrlnsfmkki*rrf*iknkmi*kkilkkqllivfhl
qqlqpltttttttspqtptnatspvnnnnnnnnnnnntrppinsppvaktpqptpqpttn
qyasesniqtliglgcsrdkairlltqakgnvdv
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFJ818 (SFJ818Q) /CSM/SF/SFJ8-A/SFJ818Q.Seq.d/                       1275   0.0
SFJ734 (SFJ734Q) /CSM/SF/SFJ7-B/SFJ734Q.Seq.d/                        815   0.0
VFE196 (VFE196Q) /CSM/VF/VFE1-D/VFE196Q.Seq.d/                        799   0.0
SFL211 (SFL211Q) /CSM/SF/SFL2-A/SFL211Q.Seq.d/                        799   0.0
CHD380 (CHD380Q) /CSM/CH/CHD3-D/CHD380Q.Seq.d/                        799   0.0
CHA120 (CHA120Q) /CSM/CH/CHA1-A/CHA120Q.Seq.d/                        799   0.0
CFI315 (CFI315Q) /CSM/CF/CFI3-A/CFI315Q.Seq.d/                        799   0.0
AFJ439 (AFJ439Q) /CSM/AF/AFJ4-B/AFJ439Q.Seq.d/                        799   0.0
CHA270 (CHA270Q) /CSM/CH/CHA2-C/CHA270Q.Seq.d/                        797   0.0
AFJ488 (AFJ488Q) /CSM/AF/AFJ4-D/AFJ488Q.Seq.d/                        791   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AE017338|AE017338.1 Mycoplasma mobile 163K section 2 of 3 of the complete genome.    34   5e-09  19
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    44   7e-08  13
AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence.    44   2e-06  9
AC116963|AC116963.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.    38   8e-06  15
AC117070|AC117070.2 Dictyostelium discoideum chromosome 2 map 2097701-2233941 strain AX4, complete sequence.    40   1e-05  14
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    40   3e-05  19
AC149162|AC149162.2 Xenopus tropicalis clone ISB-362P17, WORKING DRAFT SEQUENCE, 3 unordered pieces.    46   7e-05  2
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    36   2e-04  11
AP006628|AP006628.1 Onion yellows phytoplasma OY-M DNA, complete genome.    34   3e-04  22
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    44   4e-04  9
dna update 2004. 5.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54JB0) RecName: Full=Protein DDI1 homolog;                          321   3e-86
AM910995_387(AM910995|pid:none) Plasmodium knowlesi strain H chr...    91   1e-16
(Q4WGS4) RecName: Full=DNA damage-inducible protein 1;                 86   3e-15
(A1DCU5) RecName: Full=DNA damage-inducible protein 1;                 86   3e-15
(Q6CFI3) RecName: Full=DNA damage-inducible protein 1;  &CR38212...    85   6e-15
AP007151_401(AP007151|pid:none) Aspergillus oryzae RIB40 genomic...    84   8e-15
(Q2USD7) RecName: Full=DNA damage-inducible protein 1;                 84   8e-15
(A1CDT9) RecName: Full=DNA damage-inducible protein 1;                 84   8e-15
(Q7S906) RecName: Full=DNA damage-inducible protein 1;                 83   2e-14
(Q10255) RecName: Full=Uncharacterized protein C56F8.07;               82   3e-14
protein update 2009. 5.27
PSORT 

 psg: 0.83  gvh: 0.33  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.28  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 64.0 %: cytoplasmic
	 20.0 %: nuclear
	  8.0 %: mitochondrial
	  8.0 %: plasma membrane

>> prediction for SFJ818 is cyt
5' end seq. ID SFJ818F
5' end seq. 
>SFJ818F.Seq
AACACATAAATAATATTTATCTATCTATCCACACACCCAAAGTATTCATATTAATGGCAG
AAATAACAATATCAATTGAAAATGAAAATTTCATTCAAGTAAATTTACAACCAGATCAAA
CAGTTGAAGATCTAAAACGTAGAGTAGAATTTGAAACCACAATTTTAGTGAACAATCAAG
TTTTAACACTTGATGGAAAAGTATTAGATAATGAAAAGAAATTATCAGACTATTCAATTA
AAGGTGGTGATTTCTTATTGATAACAAAAAATGTTTTAAGAGCACCACAACAAAGATCAC
AACAACCCCAACAACCACAACAACCACAACAACCACAACAACAACGTCAACCACAAAGAG
ATCCTCTCAATTCACCACAAGATATTTTAGACCACTTTACAAACAATCCTGAAGACTTAA
CTCAAGTTATAAATTCAAATCCAGCATTAGCAAATGCAATCTTAAGTAAAGATATGAAAT
TCCTTACTCACTTTGTAGAACAAATCAAAGAACAACGTCGTATTCAAGAATTGGCATTAA
AAGATCCATATGGTGAAGAGTATCAAAAATTAGCTTATCAACATATTCAACAACAAAATA
TTGAAAAAAATATGCAACATGCTATGGAA----------
Length of 5' end seq. 629
3' end seq. ID SFJ818Z
3' end seq. 
>SFJ818Z.Seq
----------TGCNGAAAGATGNGAAATTTCAAGAATTATTGATNNTAGATTTCATGGTA
TTGNTAAAGGTGTGGGTACATCAAAAATTATAGGTAGAGTTCATAGTACAGACTTAAAAC
TTGGCAACTCTTTATTCTCTGTATCATTATCTATCCTTCAAAATCAAGATGTTGACTTCA
TCCTTGGTTTGGATATGTTAAAGCGTCATCAAGTCATTTTGGATTTAAATAGAGGTGTAT
TACAAATTGCAAATGAAAAGATTGAATTCCTTCATGAAAAAGATTTAAAGGAGATTTTAA
ATAAAGAACAAAATGATTTAGAAGAAGATACTAAAAAAGCAACTGCTAATAGTCTTTCAC
CTTCAACAACTTCAACCACTTACCACTACCACTACCACTACTTCACCCCAAACTCCAACT
AATGCCACTTCTCCTGTAAATAATAATAATAATAATAATAACAACAACAACAACACTAGA
CCTCCAATTAATTCACCACCAGTTGCAAAGACACCGCAACCAACACCACAACCAACTACA
AATCAATATGCTTCTGAATCCAATATCCAAACCCTTATTGGACTTGGTTGTTCAAGAGAT
AAGGCAATTAGACTTTTAACTCAAGCTAAAGGCAATGTTGATGTTG
Length of 3' end seq. 636
Connected seq. ID SFJ818P
Connected seq. 
>SFJ818P.Seq
AACACATAAATAATATTTATCTATCTATCCACACACCCAAAGTATTCATATTAATGGCAG
AAATAACAATATCAATTGAAAATGAAAATTTCATTCAAGTAAATTTACAACCAGATCAAA
CAGTTGAAGATCTAAAACGTAGAGTAGAATTTGAAACCACAATTTTAGTGAACAATCAAG
TTTTAACACTTGATGGAAAAGTATTAGATAATGAAAAGAAATTATCAGACTATTCAATTA
AAGGTGGTGATTTCTTATTGATAACAAAAAATGTTTTAAGAGCACCACAACAAAGATCAC
AACAACCCCAACAACCACAACAACCACAACAACCACAACAACAACGTCAACCACAAAGAG
ATCCTCTCAATTCACCACAAGATATTTTAGACCACTTTACAAACAATCCTGAAGACTTAA
CTCAAGTTATAAATTCAAATCCAGCATTAGCAAATGCAATCTTAAGTAAAGATATGAAAT
TCCTTACTCACTTTGTAGAACAAATCAAAGAACAACGTCGTATTCAAGAATTGGCATTAA
AAGATCCATATGGTGAAGAGTATCAAAAATTAGCTTATCAACATATTCAACAACAAAATA
TTGAAAAAAATATGCAACATGCTATGGAA----------TGCNGAAAGATGNGAAATTTC
AAGAATTATTGATNNTAGATTTCATGGTATTGNTAAAGGTGTGGGTACATCAAAAATTAT
AGGTAGAGTTCATAGTACAGACTTAAAACTTGGCAACTCTTTATTCTCTGTATCATTATC
TATCCTTCAAAATCAAGATGTTGACTTCATCCTTGGTTTGGATATGTTAAAGCGTCATCA
AGTCATTTTGGATTTAAATAGAGGTGTATTACAAATTGCAAATGAAAAGATTGAATTCCT
TCATGAAAAAGATTTAAAGGAGATTTTAAATAAAGAACAAAATGATTTAGAAGAAGATAC
TAAAAAAGCAACTGCTAATAGTCTTTCACCTTCAACAACTTCAACCACTTACCACTACCA
CTACCACTACTTCACCCCAAACTCCAACTAATGCCACTTCTCCTGTAAATAATAATAATA
ATAATAATAACAACAACAACAACACTAGACCTCCAATTAATTCACCACCAGTTGCAAAGA
CACCGCAACCAACACCACAACCAACTACAAATCAATATGCTTCTGAATCCAATATCCAAA
CCCTTATTGGACTTGGTTGTTCAAGAGATAAGGCAATTAGACTTTTAACTCAAGCTAAAG
GCAATGTTGATGTTG
Length of connected seq. 1265
Full length Seq ID -
Full length Seq. -
Length of full length seq. -