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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFJ815
Library SF
(Link to library)
Clone ID SFJ815
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13888-1
Original site URL
Representative seq. ID SFJ815P
(Link to Original site)
Representative DNA sequence 
>SFJ815 (SFJ815Q) /CSM/SF/SFJ8-A/SFJ815Q.Seq.d/
ATTTTTATTTTCACAACTAATAACAGACTAAATTAATAAAAATAAAAATAAAAATAAACA
AACCAAATTAAAAATATTAAATAAAATGGAATCTAACACAAATTCTCAAGGACAAGGTAT
TATTCCTCAATCATATCATTCATCAATTTTCTTTTCAATTTCAAAAGGATCTGATAAGAT
TGGTGGATTATTAGAGTATTTAGAGATTATTAAAAAACATAATATCAACATTACAAGAAT
TGAATCAAGACCATCAAAAACCGAAAAAAAAGATTATGATTTCTTTTTAGATTTAGAATA
TCCAACAGAAAACAATAAAGAAGTTGAAAAGGTTATTAAAGATCTCGAAGAAAAAGGTGT
AAAAGCTACAACCCTTCAAGAAAGTTCAAACCAAACTTATGCTCCATGGTTTCCAAGAAA
AATTTCAGATTTAGATTTATTTGCAAATAAAGTATTAGAAATGGGATCAGATTTAACTTC
AGATCATCCAGGTGCTTCAGATCCAGTTTACAGAGAAAGAAGAAGAGAAATTGCAAAAAT
TGCTTCAACTTATAAACATGGAGATGAAATTCCAAGAATTGATTATACAGAAGAAGAAAT
TAAAACATGXXXXXXXXXXATTCGTCCAGTACAAGGTTTACTCTCTGCTAGAGATTTCTT
AAATGGTTTAGCTTTCCGTGTATTCCATGCAACTCAATATATTAGACATCCATCCGTACC
ATTATATACACCAGAACCAGATTGTTGTCATGAATTATTAGGTCATGTTCCATTATTAGC
TGATCCTGATTTCGCTGATTTTAGTCAAGAGATTGGTTTAGCTTCAATTGGTGCTTCTGA
TGAAGATATTCAATTACTTAGTACTTGTTATTGGTTTACAGTTGAATTTGGATTATGTAA
AGAAGGTGATACAATTAGAGCATATGGTGCAGGTATTTTATCATCAACAGGTGAAATGGA
ACACTTTTTAACTGATAAAGCAAAAAAATTACCATTTAATCCATTTGACGCATGCAATAC
TGAATATCCAATTACAACATTCCAACCACTTTACTATGTTGCAGAAAGTTTCCAAAAAGC
AAAAGAACAAATGAGACAATTTGCTGATAGCTTTAAAAAACCATTTTCAATTCGTTACAA
TCCATACACTCAATCAANNGAAAAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
flfsqlitd*INKNKNKNKQTKLKILNKMESNTNSQGQGIIPQSYHSSIFFSISKGSDKI
GGLLEYLEIIKKHNINITRIESRPSKTEKKDYDFFLDLEYPTENNKEVEKVIKDLEEKGV
KATTLQESSNQTYAPWFPRKISDLDLFANKVLEMGSDLTSDHPGASDPVYRERRREIAKI
ASTYKHGDEIPRIDYTEEEIKT---

---IRPVQGLLSARDFLNGLAFRVFHATQYIRHPSVPLYTPEPDCCHELLGHVPLLADPD
FADFSQEIGLASIGASDEDIQLLSTCYWFTVEFGLCKEGDTIRAYGAGILSSTGEMEHFL
TDKAKKLPFNPFDACNTEYPITTFQPLYYVAESFQKAKEQMRQFADSFKKPFSIRYNPYT
QSXEK
Translated Amino Acid sequence (All Frames) 
Frame A:
ififttnnrln**k*k*k*tnqiknik*ngi*hkfsrtryyssiisfinflfnfkri**d
wwiirvfrdy*kt*yqhykn*iktiknrkkrl*flfrfrisnrkq*rs*kgy*rsrrkrc
ksynpsrkfkpnlcsmvskknfrfrfick*sirngirfnfrssrcfrsslqrkkkrnckn
cfnl*twr*nskn*lyrrrn*nm---

---IRPVQGLLSARDFLNGLAFRVFHATQYIRHPSVPLYTPEPDCCHELLGHVPLLADPD
FADFSQEIGLASIGASDEDIQLLSTCYWFTVEFGLCKEGDTIRAYGAGILSSTGEMEHFL
TDKAKKLPFNPFDACNTEYPITTFQPLYYVAESFQKAKEQMRQFADSFKKPFSIRYNPYT
QSXEK

Frame B:
flfsqlitd*INKNKNKNKQTKLKILNKMESNTNSQGQGIIPQSYHSSIFFSISKGSDKI
GGLLEYLEIIKKHNINITRIESRPSKTEKKDYDFFLDLEYPTENNKEVEKVIKDLEEKGV
KATTLQESSNQTYAPWFPRKISDLDLFANKVLEMGSDLTSDHPGASDPVYRERRREIAKI
ASTYKHGDEIPRIDYTEEEIKT---

---fvqykvyslleis*mv*lsvysmqlnildihpyhyihqnqivvmny*vmfhy*lili
slilvkrlv*lqlvllmkifnylvlviglqlnldyvkkviqlehmvqvfyhqqvkwntf*
likqknyhlihlthailniqlqhsnhftmlqkvskkqknk*dnllialknhfqfvtihtl
nqxkk

Frame C:
fyfhn**qtklikikikinkpn*ky*ikwnltqilkdkvlflnhiihqfsfqfqkdlirl
vdy*si*rllkniistlqelnqdhqkpkkkimisf*i*niqqktikklkrllkiskkkv*
klqpfkkvqtklmlhgfqekfqi*iylqiky*kwdqi*lqiiqvlqiqftekeeeklqkl
lqlinmemkfqeliiqkkklkh---

---ssstrftlc*rflkwfsfpcipcnsiy*tsirtiiytrtrlls*iirscsiis*s*f
r*f*srdwfsfnwcf**rysit*ylllvys*iwim*rr*yn*siwcryfiinr*ngtlfn
**skkiti*si*rmqy*isnynipttllccrkfpkskrtnetic**l*ktifnslqsihs
ixxk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFJ815 (SFJ815Q) /CSM/SF/SFJ8-A/SFJ815Q.Seq.d/                       1978   0.0
AFK610 (AFK610Q) /CSM/AF/AFK6-A/AFK610Q.Seq.d/                       1031   0.0
AFC710 (AFC710Q) /CSM/AF/AFC7-A/AFC710Q.Seq.d/                       1031   0.0
SFG127 (SFG127Q) /CSM/SF/SFG1-B/SFG127Q.Seq.d/                       1027   0.0
SSM681 (SSM681Q) /CSM/SS/SSM6-D/SSM681Q.Seq.d/                       1025   0.0
SFK790 (SFK790Q) /CSM/SF/SFK7-D/SFK790Q.Seq.d/                       1025   0.0
SFK632 (SFK632Q) /CSM/SF/SFK6-B/SFK632Q.Seq.d/                       1025   0.0
SFK602 (SFK602Q) /CSM/SF/SFK6-A/SFK602Q.Seq.d/                       1025   0.0
SFK580 (SFK580Q) /CSM/SF/SFK5-D/SFK580Q.Seq.d/                       1025   0.0
SFJ456 (SFJ456Q) /CSM/SF/SFJ4-C/SFJ456Q.Seq.d/                       1025   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BG225890|0    90   9e-14  1
CN124807|CN124807.1 RHOH1_7_B07.b1_A002 Acid- and alkaline-treated roots Sorghum bicolor cDNA clone RHOH1_7_B07_A002 3', mRNA sequence.    48   9e-09  3
CN124878|CN124878.1 RHOH1_7_B07.g1_A002 Acid- and alkaline-treated roots Sorghum bicolor cDNA clone RHOH1_7_B07_A002 5', mRNA sequence.    38   2e-05  3
AP003188|AP003188.2 Clostridium perfringens DNA, complete genome, section 4/10.    40   4e-04  14
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36   8e-04  21
AE017338|AE017338.1 Mycoplasma mobile 163K section 2 of 3 of the complete genome.    34   0.002  16
AL929354|AL929354.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 4/4.    36   0.008  15
BD061520|BD061520.1 Genome DNA of symbiotic bacteria of aphid.     34   0.012  19
AR409405|AR409405.1 Sequence 1 from patent US 6632935.             34   0.012  19
AL954843|AL954843.8 Zebrafish DNA sequence from clone DKEY-149K8 in linkage group 15.    42   0.016  6
dna update 2004. 5.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54XS1) RecName: Full=Probable phenylalanine-4-hydroxylase;    ...   682   0.0
BC056537_1(BC056537|pid:none) Danio rerio phenylalanine hydroxyl...   361   3e-98
AY330224_1(AY330224|pid:none) Danio rerio Pah mRNA, complete cds...   359   9e-98
AY615522_1(AY615522|pid:none) Gallus gallus phenylalanine hydrox...   351   3e-95
BC059550_1(BC059550|pid:none) Danio rerio tryptophan hydroxylase...   350   5e-95
BC013458_1(BC013458|pid:none) Mus musculus phenylalanine hydroxy...   346   8e-94
EU730759_1(EU730759|pid:none) Micropogonias undulatus tryptophan...   342   1e-92
AY616188_1(AY616188|pid:none) Takifugu rubripes non-neuronal try...   341   2e-92
(P17532) RecName: Full=Tryptophan 5-hydroxylase 1;          EC=1...   341   2e-92
(Q92142) RecName: Full=Tryptophan 5-hydroxylase;          EC=1.1...   341   3e-92
protein update 2009. 5.27
PSORT 

 psg: 0.58  gvh: 0.35  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.03  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 36.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SFJ815 is cyt
5' end seq. ID SFJ815F
5' end seq. 
>SFJ815F.Seq
ATTTTTATTTTCACAACTAATAACAGACTAAATTAATAAAAATAAAAATAAAAATAAACA
AACCAAATTAAAAATATTAAATAAAATGGAATCTAACACAAATTCTCAAGGACAAGGTAT
TATTCCTCAATCATATCATTCATCAATTTTCTTTTCAATTTCAAAAGGATCTGATAAGAT
TGGTGGATTATTAGAGTATTTAGAGATTATTAAAAAACATAATATCAACATTACAAGAAT
TGAATCAAGACCATCAAAAACCGAAAAAAAAGATTATGATTTCTTTTTAGATTTAGAATA
TCCAACAGAAAACAATAAAGAAGTTGAAAAGGTTATTAAAGATCTCGAAGAAAAAGGTGT
AAAAGCTACAACCCTTCAAGAAAGTTCAAACCAAACTTATGCTCCATGGTTTCCAAGAAA
AATTTCAGATTTAGATTTATTTGCAAATAAAGTATTAGAAATGGGATCAGATTTAACTTC
AGATCATCCAGGTGCTTCAGATCCAGTTTACAGAGAAAGAAGAAGAGAAATTGCAAAAAT
TGCTTCAACTTATAAACATGGAGATGAAATTCCAAGAATTGATTATACAGAAGAAGAAAT
TAAAACATG----------
Length of 5' end seq. 609
3' end seq. ID SFJ815Z
3' end seq. 
>SFJ815Z.Seq
----------ATTCGTCCAGTACAAGGTTTACTCTCTGCTAGAGATTTCTTAAATGGTTT
AGCTTTCCGTGTATTCCATGCAACTCAATATATTAGACATCCATCCGTACCATTATATAC
ACCAGAACCAGATTGTTGTCATGAATTATTAGGTCATGTTCCATTATTAGCTGATCCTGA
TTTCGCTGATTTTAGTCAAGAGATTGGTTTAGCTTCAATTGGTGCTTCTGATGAAGATAT
TCAATTACTTAGTACTTGTTATTGGTTTACAGTTGAATTTGGATTATGTAAAGAAGGTGA
TACAATTAGAGCATATGGTGCAGGTATTTTATCATCAACAGGTGAAATGGAACACTTTTT
AACTGATAAAGCAAAAAAATTACCATTTAATCCATTTGACGCATGCAATACTGAATATCC
AATTACAACATTCCAACCACTTTACTATGTTGCAGAAAGTTTCCAAAAAGCAAAAGAACA
AATGAGACAATTTGCTGATAGCTTTAAAAAACCATTTTCAATTCGTTACAATCCATACAC
TCAATCAANNGAAAAAA
Length of 3' end seq. 547
Connected seq. ID SFJ815P
Connected seq. 
>SFJ815P.Seq
ATTTTTATTTTCACAACTAATAACAGACTAAATTAATAAAAATAAAAATAAAAATAAACA
AACCAAATTAAAAATATTAAATAAAATGGAATCTAACACAAATTCTCAAGGACAAGGTAT
TATTCCTCAATCATATCATTCATCAATTTTCTTTTCAATTTCAAAAGGATCTGATAAGAT
TGGTGGATTATTAGAGTATTTAGAGATTATTAAAAAACATAATATCAACATTACAAGAAT
TGAATCAAGACCATCAAAAACCGAAAAAAAAGATTATGATTTCTTTTTAGATTTAGAATA
TCCAACAGAAAACAATAAAGAAGTTGAAAAGGTTATTAAAGATCTCGAAGAAAAAGGTGT
AAAAGCTACAACCCTTCAAGAAAGTTCAAACCAAACTTATGCTCCATGGTTTCCAAGAAA
AATTTCAGATTTAGATTTATTTGCAAATAAAGTATTAGAAATGGGATCAGATTTAACTTC
AGATCATCCAGGTGCTTCAGATCCAGTTTACAGAGAAAGAAGAAGAGAAATTGCAAAAAT
TGCTTCAACTTATAAACATGGAGATGAAATTCCAAGAATTGATTATACAGAAGAAGAAAT
TAAAACATG----------ATTCGTCCAGTACAAGGTTTACTCTCTGCTAGAGATTTCTT
AAATGGTTTAGCTTTCCGTGTATTCCATGCAACTCAATATATTAGACATCCATCCGTACC
ATTATATACACCAGAACCAGATTGTTGTCATGAATTATTAGGTCATGTTCCATTATTAGC
TGATCCTGATTTCGCTGATTTTAGTCAAGAGATTGGTTTAGCTTCAATTGGTGCTTCTGA
TGAAGATATTCAATTACTTAGTACTTGTTATTGGTTTACAGTTGAATTTGGATTATGTAA
AGAAGGTGATACAATTAGAGCATATGGTGCAGGTATTTTATCATCAACAGGTGAAATGGA
ACACTTTTTAACTGATAAAGCAAAAAAATTACCATTTAATCCATTTGACGCATGCAATAC
TGAATATCCAATTACAACATTCCAACCACTTTACTATGTTGCAGAAAGTTTCCAAAAAGC
AAAAGAACAAATGAGACAATTTGCTGATAGCTTTAAAAAACCATTTTCAATTCGTTACAA
TCCATACACTCAATCAANNGAAAAAA
Length of connected seq. 1156
Full length Seq ID -
Full length Seq. -
Length of full length seq. -