>SFJ814 (SFJ814Q) /CSM/SF/SFJ8-A/SFJ814Q.Seq.d/
XXXXXXXXXXTAATTCACCCGAGGATATTCAATATCAATTAAATCATTTAAATCAACCAT
TCCAAGATGACTATCATAATGATCAAACTGAAGAATTAAAAGATGATGATTATAATTTTA
ATGATCAACAAATTAACAATGGTCAATTTGAAAATAATGTTGAAGAATTTCCTGATTTAA
ATGATGCTAATGATAATTTTGAACAAGTTAACAACAACAACAACAACATCAATAATAATA
ACAATAACAACTTTAAAGTTGATAAATCAAAGAAAAGTGCTCAACAAGTTGAAATTGCTT
TAGAGAATGAAAGACTTTATCTTCAAGAAGTTGAAGATGCTCCAGAGAGACTATATGAAG
AAATTCATAATTCCAATTTGAATAAAGCAGTTCAAGAGGCTGAAGAAATTGAAAGACAAC
AAAATGGTAATGGTTCACCTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATG
TTGAAAATAATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAAC
GTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTT
TAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCT
TACTNAAGAGNAANAAGAAGAACAA

---NSPEDIQYQLNHLNQPFQDDYHNDQTEELKDDDYNFNDQQINNGQFENNVEEFPDLN
DANDNFEQVNNNNNNINNNNNNNFKVDKSKKSAQQVEIALENERLYLQEVEDAPERLYEE
IHNSNLNKAVQEAEEIERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQR
IENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLKXXKKN

Frame A:
---NSPEDIQYQLNHLNQPFQDDYHNDQTEELKDDDYNFNDQQINNGQFENNVEEFPDLN
DANDNFEQVNNNNNNINNNNNNNFKVDKSKKSAQQVEIALENERLYLQEVEDAPERLYEE
IHNSNLNKAVQEAEEIERQQNGNGSPAVNSHKIVTQMGNVENNEITNEQDAIEQAQHLQR
IENGEDIDEYEAAQHEVAFLDENEQDAAKLQNEMDQLELLLKXXKKN


Frame B:
---ihprifnin*ii*inhskmtiimiklkn*kmmiiilminkltmvnlkimlknfli*m
mlmiilnklttttttsiiitittlklinqrkvlnklkll*rmkdfifkklkmlqrdymkk
fiipi*ikqfkrlkklkdnkmvmvhll*tlirl*lkwemlkimklpmnkmplnklniynv
lkmvkismsmklpnmklpf*mkmnkmllnykmkwtn*nsyxrxxrrt


Frame C:
---ftrgysisiksfkstipr*ls**sn*rikr**l*f**stn*qwsi*k*c*ris*fk*
c***f*ts*qqqqqhq***q*ql*s**ikekcsts*ncfre*ktlssrs*rcsreti*rn
s*fqfe*sssrg*rn*kttkw*wftcckls*dcnsngkc*k**nyq*trch*tsstftty
*kw*ryr*v*scpt*sclfr*k*trcc*itk*ngpirtltxexxeeq

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFJ814 (SFJ814Q) /CSM/SF/SFJ8-A/SFJ814Q.Seq.d/                        842   0.0
SHA745 (SHA745Q) /CSM/SH/SHA7-B/SHA745Q.Seq.d/                        821   0.0
SHA660 (SHA660Q) /CSM/SH/SHA6-C/SHA660Q.Seq.d/                        821   0.0
SFG212 (SFG212Q) /CSM/SF/SFG2-A/SFG212Q.Seq.d/                        821   0.0
SFF541 (SFF541Q) /CSM/SF/SFF5-B/SFF541Q.Seq.d/                        821   0.0
SFC806 (SFC806Q) /CSM/SF/SFC8-A/SFC806Q.Seq.d/                        821   0.0
CHR131 (CHR131Q) /CSM/CH/CHR1-B/CHR131Q.Seq.d/                        821   0.0
CHQ337 (CHQ337Q) /CSM/CH/CHQ3-B/CHQ337Q.Seq.d/                        821   0.0
CHP603 (CHP603Q) /CSM/CH/CHP6-A/CHP603Q.Seq.d/                        821   0.0
CHO814 (CHO814Q) /CSM/CH/CHO8-A/CHO814Q.Seq.d/                        821   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   819   0.0    2
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.    66   1e-11  11
BX842643|BX842643.1 Mycoplasma mycoides subsp. mycoides SC genomic DNA, complete  sequence; segment 2/4.    36   1e-04  14
AL929355|AL929355.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 1/5.    34   2e-04  11
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    32   4e-04  14
AE014850|AE014850.1 Plasmodium falciparum 3D7 chromosome 12, section 7 of 9 of the complete sequence.    36   4e-04  12
AC005139|AC005139.3 Plasmodium falciparum chromosome 12, WORKING DRAFT SEQUENCE, 5 unordered pieces.    36   7e-04  11
AC116979|AC116979.3 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, complete sequence.    36   9e-04  15
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    32   0.001  17
AE016968|AE016968.1 Mycoplasma gallisepticum strain R section 2 of 4 of the complete genome.    32   0.001  15

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   403   e-111
(Q23MT7) RecName: Full=Probable beta-tubulin polyglutamylase;   ...    51   3e-05
AF305694_1(AF305694|pid:none) Kaposi's sarcoma-associated herpes...    48   3e-04
CR855913_1(CR855913|pid:none) Paramecium tetraurelia macronuclea...    47   4e-04
U52064_1(U52064|pid:none) Kaposi's sarcoma-associated herpes-lik...    47   5e-04
AF192756_1(AF192756|pid:none) Kaposi's sarcoma-associated herpes...    47   5e-04
AF148805_82(AF148805|pid:none) Human herpesvirus 8 type P isolat...    45   0.003
AL034558_21(AL034558|pid:none) Plasmodium falciparum MAL3P2, com...    45   0.003
AC117070_42(AC117070|pid:none) Dictyostelium discoideum chromoso...    45   0.003
AL844506_76(AL844506|pid:none) Plasmodium falciparum 3D7 chromos...    44   0.003

 psg: 0.75  gvh: 0.14  alm: 0.62  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 36.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for SFJ814 is nuc

>SFJ814Z.Seq
----------TAATTCACCCGAGGATATTCAATATCAATTAAATCATTTAAATCAACCAT
TCCAAGATGACTATCATAATGATCAAACTGAAGAATTAAAAGATGATGATTATAATTTTA
ATGATCAACAAATTAACAATGGTCAATTTGAAAATAATGTTGAAGAATTTCCTGATTTAA
ATGATGCTAATGATAATTTTGAACAAGTTAACAACAACAACAACAACATCAATAATAATA
ACAATAACAACTTTAAAGTTGATAAATCAAAGAAAAGTGCTCAACAAGTTGAAATTGCTT
TAGAGAATGAAAGACTTTATCTTCAAGAAGTTGAAGATGCTCCAGAGAGACTATATGAAG
AAATTCATAATTCCAATTTGAATAAAGCAGTTCAAGAGGCTGAAGAAATTGAAAGACAAC
AAAATGGTAATGGTTCACCTGCTGTAAACTCTCATAAGATTGTAACTCAAATGGGAAATG
TTGAAAATAATGAAATTACCAATGAACAAGATGCCATTGAACAAGCTCAACATTTACAAC
GTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTT
TAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGAAATGGACCAATTAGAACTCT
TACTNAAGAGNAANAAGAAGAACAA