SFJ810
Library SF
(Link to library)
Clone ID SFJ810
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SFJ810P
(Link to Original site)
Representative DNA sequence
>SFJ810 (SFJ810Q) /CSM/SF/SFJ8-A/SFJ810Q.Seq.d/
ATTATTCATTATATTATTAATTTGTTTTTAAAAAATTTATAAAAATAAAAATTATTAATT
TCAAATAAATTAAAAGATAGAAGAAAATGACTGATAATTGGGATAAAGAAAAACTTGCTA
AAAAAGCAGCAGAAGGTTTAAAGAATGCCAAGAATACTGCATCCTCATATGCCTCTGGAA
TAAATGCATCAAAAGATCAATTAAATTCAAATTTCAAAAATATTAAAGAGAACATTTCAA
GCAATTTGAATAATGCCAAACATACTATTGAAGAAAATGTCCATAATGCTCAAAGAACCG
GTTATCCACCAAAGGTACCAGCTCCTGGATCAAATAAATTCATTGGTTTCCTAGCTTTGG
GTGTATTTGGTTTATTTGCTTGGAAATTCTATGAAGGAAAGAAATACAAAGAGAATGAAC
AAAAATTAATTAAACAAAAACATTAAAAAAAAAAXXXXXXXXXXATTATTCATTATATTA
TTAATTTGTTTTTAAAAAATTTATAAAAATAAAAATTATTAATTTCAAATAAATTAAAAG
ATAGAAGAAAATGACTGATAATTGGGATAAAGAAAAACTTGCTAAAAAAGCAGCAGAAGG
TTTAAAGAATGCCAAGAATACTGCATCCTCATATGCCTCTGGAATAAATGCATCAAAAGA
TCAATTAAATTCAAATTTCAAAAATATTAAAGAGAACATTTCAAGCAATTTGAATAATGC
CAAACATACTATTGAAGAAAATGTCCATAATGCTCAAAGAACCGGTTATCCACCAAAGGT
ACCAGCTCCTGGATCAAATAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence
iihyiinlflknl*k*kllisnklkdrrk*liigikknllkkqqkv*rmprilhphmple
*mhqkin*iqiskilkrtfqai*impnillkkmsimlkepvihqryqlldqinslvs*lw
vylvyllgnsmkerntkrmnkn*LNKNIKKK---

---IIHYIINLFLKNL*k*kllisnklkdrrk*liigikknllkkqqkv*rmprilhphm
ple*mhqkin*iqiskilkrtfqai*impnillkkmsimlkepvihqryqlldqi


Translated Amino Acid sequence (All Frames)
Frame A:
iihyiinlflknl*k*kllisnklkdrrk*liigikknllkkqqkv*rmprilhphmple
*mhqkin*iqiskilkrtfqai*impnillkkmsimlkepvihqryqlldqinslvs*lw
vylvyllgnsmkerntkrmnkn*LNKNIKKK---

---IIHYIINLFLKNL*k*kllisnklkdrrk*liigikknllkkqqkv*rmprilhphm
ple*mhqkin*iqiskilkrtfqai*impnillkkmsimlkepvihqryqlldqi

Frame B:
lfiillicf*kiyknkny*fqin*kieend**lg*rktc*kssrrfkecqeyciliclwn
kcikrsikfkfqky*rehfkqfe*cqtyy*rkcp*csknrlstkgtsswik*ihwfpsfg
ciwficleil*rkeiqre*tkin*tktlkkk---

---lfiillicf*kiyknkny*fqin*kieend**lg*rktc*kssrrfkecqeycilic
lwnkcikrsikfkfqky*rehfkqfe*cqtyy*rkcp*csknrlstkgtsswik*

Frame C:
yslyy*fvfkkfikikiinfk*ikr*kkmtdnwdkeklakkaaeglknakntassyasgi
naskdqlnsnfknikenissnlnnakhtieenvhnaqrtgyppkvpapgsnkfigflalg
vfglfawkfyegkkykeneqklikqkh*kk---

---yslyy*fvfkkfikikiinfk*ikr*kkmtdnwdkeklakkaaeglknakntassya
sginaskdqlnsnfknikenissnlnnakhtieenvhnaqrtgyppkvpapgsnk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSM768 (SSM768Q) /CSM/SS/SSM7-C/SSM768Q.Seq.d/ 611 e-174
SSM690 (SSM690Q) /CSM/SS/SSM6-D/SSM690Q.Seq.d/ 611 e-174
SSK829 (SSK829Q) /CSM/SS/SSK8-B/SSK829Q.Seq.d/ 611 e-174
SSJ861 (SSJ861Q) /CSM/SS/SSJ8-C/SSJ861Q.Seq.d/ 611 e-174
SSJ338 (SSJ338Q) /CSM/SS/SSJ3-B/SSJ338Q.Seq.d/ 611 e-174
SSI830 (SSI830Q) /CSM/SS/SSI8-B/SSI830Q.Seq.d/ 611 e-174
SSI547 (SSI547Q) /CSM/SS/SSI5-B/SSI547Q.Seq.d/ 611 e-174
SSH508 (SSH508Q) /CSM/SS/SSH5-A/SSH508Q.Seq.d/ 611 e-174
SSG891 (SSG891Q) /CSM/SS/SSG8-D/SSG891Q.Seq.d/ 611 e-174
SSG837 (SSG837Q) /CSM/SS/SSG8-B/SSG837Q.Seq.d/ 611 e-174

own update 2001. 8.26
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AR271569|AR271569.1 Sequence 1 from patent US 6503729. 36 0.002 25
AV234950|AV234950.1 Mus musculus 10 days neonate skin cDNA, RIKEN full-length enriched library, clone:4732401F15, 3' end partial sequence. 52 0.013 1
AF071814|AF071814.1 Streptococcus pneumoniae strain WU2 PspA (pspA) gene, partial cds. 52 0.013 1
AJ010592|AJ010592.2 Guillardia theta DNA for complete sequence of nucleomorph chromosome 2. 34 0.020 10
AC002383|AC002383.1 Homo sapiens BAC clone CTB-67E13 from 7, complete sequence. 38 0.12 2
AE017195|AE017195.1 Bacillus cereus ATCC 10987 plasmid pBc10987, complete sequence. 32 0.17 8
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 34 0.18 14
AR300198|AR300198.1 Sequence 1 from patent US 6537773. 36 0.19 14
AC097652|AC097652.2 Homo sapiens BAC clone RP11-138B4 from 4, complete sequence. 38 0.20 3
AC119014|AC119014.7 Rattus norvegicus clone CH230-432P13, *** SEQUENCING IN PROGRESS ***, 12 unordered pieces. 34 0.22 4
dna update 2004. 5.30
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AE014188_347(AE014188|pid:none) Plasmodium falciparum 3D7 chromo... 37 0.93
(Q80WK7) RecName: Full=Equilibrative nucleoside transporter 3; A... 35 2.1
BC078678_1(BC078678|pid:none) Rattus norvegicus solute carrier f... 35 2.1
AL844507_240(AL844507|pid:none) Plasmodium falciparum 3D7 chromo... 35 2.7
AE017308_577(AE017308|pid:none) Mycoplasma mobile 163K complete ... 35 2.7

protein update 2009. 5.27
PSORT

psg: 0.83 gvh: 0.01 alm: 0.51 top: 0.53 tms: 0.00 mit: 0.43 mip: 0.00
nuc: 0.12 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: nuclear
20.0 %: cytoplasmic
12.0 %: mitochondrial
8.0 %: cytoskeletal
4.0 %: plasma membrane

>> prediction for SFJ810 is nuc

5' end seq. ID SFJ810F
5' end seq.
>SFJ810F.Seq
ATTATTCATTATATTATTAATTTGTTTTTAAAAAATTTATAAAAATAAAAATTATTAATT
TCAAATAAATTAAAAGATAGAAGAAAATGACTGATAATTGGGATAAAGAAAAACTTGCTA
AAAAAGCAGCAGAAGGTTTAAAGAATGCCAAGAATACTGCATCCTCATATGCCTCTGGAA
TAAATGCATCAAAAGATCAATTAAATTCAAATTTCAAAAATATTAAAGAGAACATTTCAA
GCAATTTGAATAATGCCAAACATACTATTGAAGAAAATGTCCATAATGCTCAAAGAACCG
GTTATCCACCAAAGGTACCAGCTCCTGGATCAAATAAATTCATTGGTTTCCTAGCTTTGG
GTGTATTTGGTTTATTTGCTTGGAAATTCTATGAAGGAAAGAAATACAAAGAGAATGAAC
AAAAATTAATTAAACAAAAACATTAAAAAAAAAA----------
Length of 5' end seq. 454
3' end seq. ID SFJ810Z
3' end seq.
>SFJ810Z.Seq
----------ATTATTCATTATATTATTAATTTGTTTTTAAAAAATTTATAAAAATAAAA
ATTATTAATTTCAAATAAATTAAAAGATAGAAGAAAATGACTGATAATTGGGATAAAGAA
AAACTTGCTAAAAAAGCAGCAGAAGGTTTAAAGAATGCCAAGAATACTGCATCCTCATAT
GCCTCTGGAATAAATGCATCAAAAGATCAATTAAATTCAAATTTCAAAAATATTAAAGAG
AACATTTCAAGCAATTTGAATAATGCCAAACATACTATTGAAGAAAATGTCCATAATGCT
CAAAGAACCGGTTATCCACCAAAGGTACCAGCTCCTGGATCAAATAAA
Length of 3' end seq. 338
Connected seq. ID SFJ810P
Connected seq.
>SFJ810P.Seq
ATTATTCATTATATTATTAATTTGTTTTTAAAAAATTTATAAAAATAAAAATTATTAATT
TCAAATAAATTAAAAGATAGAAGAAAATGACTGATAATTGGGATAAAGAAAAACTTGCTA
AAAAAGCAGCAGAAGGTTTAAAGAATGCCAAGAATACTGCATCCTCATATGCCTCTGGAA
TAAATGCATCAAAAGATCAATTAAATTCAAATTTCAAAAATATTAAAGAGAACATTTCAA
GCAATTTGAATAATGCCAAACATACTATTGAAGAAAATGTCCATAATGCTCAAAGAACCG
GTTATCCACCAAAGGTACCAGCTCCTGGATCAAATAAATTCATTGGTTTCCTAGCTTTGG
GTGTATTTGGTTTATTTGCTTGGAAATTCTATGAAGGAAAGAAATACAAAGAGAATGAAC
AAAAATTAATTAAACAAAAACATTAAAAAAAAAA----------ATTATTCATTATATTA
TTAATTTGTTTTTAAAAAATTTATAAAAATAAAAATTATTAATTTCAAATAAATTAAAAG
ATAGAAGAAAATGACTGATAATTGGGATAAAGAAAAACTTGCTAAAAAAGCAGCAGAAGG
TTTAAAGAATGCCAAGAATACTGCATCCTCATATGCCTCTGGAATAAATGCATCAAAAGA
TCAATTAAATTCAAATTTCAAAAATATTAAAGAGAACATTTCAAGCAATTTGAATAATGC
CAAACATACTATTGAAGAAAATGTCCATAATGCTCAAAGAACCGGTTATCCACCAAAGGT
ACCAGCTCCTGGATCAAATAAA
Length of connected seq. 792
Full length Seq ID -
Full length Seq. -
Length of full length seq. -