SFJ809
Library SF
(Link to library)
Clone ID SFJ809
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12091-1
Original site URL
Representative seq. ID SFJ809E
(Link to Original site)
Representative DNA sequence
>SFJ809 (SFJ809Q) /CSM/SF/SFJ8-A/SFJ809Q.Seq.d/
AATTTAAAAAACAATTATAAAAACAACAAATACAAAAATGATTAAGAATAGAAAATTAGA
TATTACTTCAACTAATGTTGCTGGTATTGGAACAGATTTAGATAAAAAATGTAGATTGGA
TGCAGCTTCAACTGAAGCTCAATGGAAAGGTGTTGGTCAAGCACCAGGTCTCAAGATTTG
GAGAATTGAAAATTTTAAAGTTGTCCCAGTTCCAGAATCATCATATGGTAAATTCTATGA
TGGTGATAGTTATATCATTTTACATACTTTTAAAGAAGGTAATTCACTTAAACATGATAT
TCATTTCTTTTTAGGTACTTTTACTACTCAAGATGAAGCTGGCACTGCTGCTTATAAAAC
AGTTGAATTAGATGATTTCTTAGGTGGTGCACCAATTCAATATCGTCAATGTCAATCATA
TGAAAGTCCAAGCTTTTTATCATTATTCCCAAAATATTTCATTTTATCAGGTGGTGTTGA
ATCAGGATTTAATCATGTTAAACCANCAGAATATAAACCAAGATTATTACATATTAGTGG
TGATAAGAATGCTAAAGTCGCTTGAAGTACCATTGGCAACCAGTTCATTGAATAGTGGTG
ACTGTTTCCTTTTGGATGCAGGTTTAACTATTTATCAATTCAATGGTAGTAAATCAAGTC
CACAAGAAAAGAATAAAGCCGCTGAAGTTGCACGTGCAATCGATGCAGAAAGAAAAGGTT
TACCAAAAGTTGAAGTTTTCTGTGAAACCGATTCCGATATTCCAGCTGAATTTTGGAAAC
TTTTAGGTGGAAAAGGTGCAATCGCTGCTAAACACGAAACTGCCCCAACCAAATCTGAAA
AAGTTTTATACAAATTATCAGATGCATCTGGTTCACTTAAATTCTCTGAAGTTTCACGTG
GTAAAATCAATAAATCCTCATTAAAATCTGAAGATGTTTTCATCATTGATTTAGGTAATG
AAATCTATACTTGGATCGGTTCAAAATCATCACCAAATGAAAAGAAAACAGCATTCAGTC
ATGCAACTCAATACTTGGTAAACAATAAACGTTGTGAATATACTCCAATAGTTAGAGTTT
TAGAAAATGGTACAAATCAATCATTTGAAACTTTATTATCTGCTTAATAATAAAACACAA
CAACAACAACAACACATTCAAAAAATCAATTTGTATCATAAAATAAAATAAAATATAAAC
TTT
sequence update 2001. 6. 9
Translated Amino Acid sequence
fkkql*kqqiqk*lrien*illqlmllvleqi*iknvdwmqlqlklngkvlvkhqvsrfg
elkilklsqfqnhhmvnsmmvivisfyillkkvihlnmifisf*vllllkmklalllikq
ln*mis*VVHQFNIVNVNHMKVQAFYHYSQNISFYQVVLNQDLIMLNXQNINQDYYILVV
IRMLKSLEVPLATSSLNSGDCFLLDAGLTIYQFNGSKSSPQEKNKAAEVARAIDAERKGL
PKVEVFCETDSDIPAEFWKLLGGKGAIAAKHETAPTKSEKVLYKLSDASGSLKFSEVSRG
KINKSSLKSEDVFIIDLGNEIYTWIGSKSSPNEKKTAFSHATQYLVNNKRCEYTPIVRVL
ENGTNQSFETLLSA***ntttttthsknqfvs*nkikykl


Translated Amino Acid sequence (All Frames)
Frame A:
nlknnyknnkyknd*e*kiryyfn*ccwywnrfr*km*igcsfn*ssmercwsstrsqdl
en*kf*scpssriiiw*il*w**lyhftyf*rr*ft*t*ysflfryfyysr*swhccl*n
s*ir*flrwctnsissmsii*ksklfiiipkifhfirwc*iri*sc*txri*tkiity*w
**ec*srlkyhwqpvh*ivvtvsfwmqv*lfinsmvvnqvhkkrikplklhvqsmqkekv
yqklkfsvkpipifqlnfgnf*vekvqsllntklpqpnlkkfytnyqmhlvhlnslkfhv
vksinph*nlkmfssli*vmksilgsvqnhhqmkrkqhsvmqlntw*tinvvnilq*lef
*kmvqinhlklyyllnnktqqqqqhiqkinlyhkik*ninf


Frame B:
i*ktiikttntkmiknrklditstnvagigtdldkkcrldaasteaqwkgvgqapglkiw
rienfkvvpvpessygkfydgdsyiilhtfkegnslkhdihfflgtfttqdeagtaaykt
velddflggapiqyrqcqsyespsflslfpkyfilsggvesgfnhvkpxeykprllhisg
dknakva*stignqfie*w*lfpfgcrfnylsiqw**ikstrke*sr*sctcnrcrkkrf
tks*sfl*nrfryss*iletfrwkrcnrc*trncpnqi*ksfiqiirciwft*il*sftw
*nq*iliki*rcfhh*fr**nlyldrfkiitk*kensiqscnsilgkq*tl*iysns*sf
rkwyksii*nfiicliikhnnnnntfkksiciik*nki*t


Frame C:
fkkql*kqqiqk*lrien*illqlmllvleqi*iknvdwmqlqlklngkvlvkhqvsrfg
elkilklsqfqnhhmvnsmmvivisfyillkkvihlnmifisf*vllllkmklalllikq
ln*mis*VVHQFNIVNVNHMKVQAFYHYSQNISFYQVVLNQDLIMLNXQNINQDYYILVV
IRMLKSLEVPLATSSLNSGDCFLLDAGLTIYQFNGSKSSPQEKNKAAEVARAIDAERKGL
PKVEVFCETDSDIPAEFWKLLGGKGAIAAKHETAPTKSEKVLYKLSDASGSLKFSEVSRG
KINKSSLKSEDVFIIDLGNEIYTWIGSKSSPNEKKTAFSHATQYLVNNKRCEYTPIVRVL
ENGTNQSFETLLSA***ntttttthsknqfvs*nkikykl


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFJ809 (SFJ809Q) /CSM/SF/SFJ8-A/SFJ809Q.Seq.d/ 2165 0.0
VFL329 (VFL329Q) /CSM/VF/VFL3-B/VFL329Q.Seq.d/ 2149 0.0
VFL167 (VFL167Q) /CSM/VF/VFL1-C/VFL167Q.Seq.d/ 2149 0.0
VFI790 (VFI790Q) /CSM/VF/VFI7-D/VFI790Q.Seq.d/ 2149 0.0
VFI559 (VFI559Q) /CSM/VF/VFI5-C/VFI559Q.Seq.d/ 2149 0.0
VFG582 (VFG582Q) /CSM/VF/VFG5-D/VFG582Q.Seq.d/ 2149 0.0
VFG124 (VFG124Q) /CSM/VF/VFG1-A/VFG124Q.Seq.d/ 2149 0.0
VFE814 (VFE814Q) /CSM/VF/VFE8-A/VFE814Q.Seq.d/ 2149 0.0
VFE168 (VFE168Q) /CSM/VF/VFE1-C/VFE168Q.Seq.d/ 2149 0.0
VFD453 (VFD453Q) /CSM/VF/VFD4-C/VFD453Q.Seq.d/ 2149 0.0

own update 2004. 8. 7
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

J03515|J03515.1 Slime mold (D.discoideum) severin mRNA, complete cds. 1132 0.0 2
U66525|U66525.1 Dictyostelium discoideum ORFveg114 mRNA, complete cds. 100 9e-17 1
BP190606|BP190606.1 Dugesia japonica cDNA, clone: 04979_HH, expressed in the head. 56 0.001 1
AL844509|AL844509.1 Plasmodium falciparum chromosome 13. 36 0.004 29
AC115612|AC115612.2 Dictyostelium discoideum chromosome 2 map 6245135-6357017 strain AX4, complete sequence. 34 0.007 10
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence. 32 0.019 16
AC116869|AC116869.4 Mus musculus chromosome 10 clone RP24-414K13 map 10, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces. 34 0.022 13
AL929356|AL929356.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 2/5. 32 0.032 14
AP006628|AP006628.1 Onion yellows phytoplasma OY-M DNA, complete genome. 32 0.038 21
AL356915|AL356915.19 Human DNA sequence from clone RP11-179F17 on chromosome 13. 50 0.078 1
dna update 2004. 5.30
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

U70047_1(U70047|pid:none) Physarum polycephalum actin-binding pr... 207 8e-90
AJ621806_1(AJ621806|pid:none) Suberites ficus mRNA for gelsolin ... 187 1e-71
AM920435_1012(AM920435|pid:none) Penicillium chrysogenum Wiscons... 188 9e-65
S51363(S51363;S49320) actin modulator protein EWAM - earthworm (... 175 2e-63
FN313917_1(FN313917|pid:none) Schistosoma japonicum isolate Anhu... 149 1e-62
FN357305_4(FN357305|pid:none) Schistosoma mansoni genome sequenc... 147 5e-60
AY814387_1(AY814387|pid:none) Schistosoma japonicum SJCHGC01371 ... 147 5e-60
FN317120_1(FN317120|pid:none) Schistosoma japonicum isolate Anhu... 147 5e-60
FN316954_1(FN316954|pid:none) Schistosoma japonicum isolate Anhu... 147 8e-60
FN357305_6(FN357305|pid:none) Schistosoma mansoni genome sequenc... 147 7e-58
protein update 2009. 7. 3
PSORT

psg: 0.78 gvh: 0.37 alm: 0.37 top: 0.53 tms: 0.00 mit: 0.28 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: cytoplasmic
24.0 %: nuclear
12.0 %: mitochondrial
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for SFJ809 is cyt

5' end seq. ID SFJ809F
5' end seq.
>SFJ809F.Seq
AATTTAAAAAACAATTATAAAAACAACAAATACAAAAATGATTAAGAATAGAAAATTAGA
TATTACTTCAACTAATGTTGCTGGTATTGGAACAGATTTAGATAAAAAATGTAGATTGGA
TGCAGCTTCAACTGAAGCTCAATGGAAAGGTGTTGGTCAAGCACCAGGTCTCAAGATTTG
GAGAATTGAAAATTTTAAAGTTGTCCCAGTTCCAGAATCATCATATGGTAAATTCTATGA
TGGTGATAGTTATATCATTTTACATACTTTTAAAGAAGGTAATTCACTTAAACATGATAT
TCATTTCTTTTTAGGTACTTTTACTACTCAAGATGAAGCTGGCACTGCTGCTTATAAAAC
AGTTGAATTAGATGATTTCTTAGGTGGTGCACCAATTCAATATCGTCAATGTCAATCATA
TGAAAGTCCAAGCTTTTTATCATTATTCCCAAAATATTTCATTTTATCAGGTGGTGTTGA
ATCAGGATTTAATCATGTTAAACCAACAGAATATAAACCAAGATTATTACATATTAGTGG
TGATAAGAATGCTAAAGTCGCTTGAAGTACCATTGGCAACCAGTTCATTGAATAGTGGTG
ACTGTTTCCTTTTGGATGC----------
Length of 5' end seq. 619
3' end seq. ID SFJ809Z
3' end seq.
>SFJ809Z.Seq
----------TAATCATGTTAANCCACCAGAATATAAACCAAGATTATTACATATTAGTG
GTGATAAGAATGCTAAAGTCGCTGAAGTACCATTGGCAACCAGTTCATTGAATAGTGGTG
ACTGTTTCCTTTTGGATGCAGGTTTAACTATTTATCAATTCAATGGTAGTAAATCAAGTC
CACAAGAAAAGAATAAAGCCGCTGAAGTTGCACGTGCAATCGATGCAGAAAGAAAAGGTT
TACCAAAAGTTGAAGTTTTCTGTGAAACCGATTCCGATATTCCAGCTGAATTTTGGAAAC
TTTTAGGTGGAAAAGGTGCAATCGCTGCTAAACACGAAACTGCCCCAACCAAATCTGAAA
AAGTTTTATACAAATTATCAGATGCATCTGGTTCACTTAAATTCTCTGAAGTTTCACGTG
GTAAAATCAATAAATCCTCATTAAAATCTGAAGATGTTTTCATCATTGATTTAGGTAATG
AAATCTATACTTGGATCGGTTCAAAATCATCACCAAATGAAAAGAAAACAGCATTCAGTC
ATGCAACTCAATACTTGGTAAACAATAAACGTTGTGAATATACTCCAATAGTTAGAGTTT
TAGAAAATGGTACAAATCAATCATTTGAAACTTTATTATCTGCTTAATAATAAAACACAA
CAACAACAACAACACATTCAAAAAATCAATTTGTATCATAAAATAAAATAAAATATAAAC
TTT
Length of 3' end seq. 713
Connected seq. ID SFJ809P
Connected seq.
>SFJ809P.Seq
AATTTAAAAAACAATTATAAAAACAACAAATACAAAAATGATTAAGAATAGAAAATTAGA
TATTACTTCAACTAATGTTGCTGGTATTGGAACAGATTTAGATAAAAAATGTAGATTGGA
TGCAGCTTCAACTGAAGCTCAATGGAAAGGTGTTGGTCAAGCACCAGGTCTCAAGATTTG
GAGAATTGAAAATTTTAAAGTTGTCCCAGTTCCAGAATCATCATATGGTAAATTCTATGA
TGGTGATAGTTATATCATTTTACATACTTTTAAAGAAGGTAATTCACTTAAACATGATAT
TCATTTCTTTTTAGGTACTTTTACTACTCAAGATGAAGCTGGCACTGCTGCTTATAAAAC
AGTTGAATTAGATGATTTCTTAGGTGGTGCACCAATTCAATATCGTCAATGTCAATCATA
TGAAAGTCCAAGCTTTTTATCATTATTCCCAAAATATTTCATTTTATCAGGTGGTGTTGA
ATCAGGATTTAATCATGTTAAACCAACAGAATATAAACCAAGATTATTACATATTAGTGG
TGATAAGAATGCTAAAGTCGCTTGAAGTACCATTGGCAACCAGTTCATTGAATAGTGGTG
ACTGTTTCCTTTTGGATGC----------TAATCATGTTAANCCACCAGAATATAAACCA
AGATTATTACATATTAGTGGTGATAAGAATGCTAAAGTCGCTGAAGTACCATTGGCAACC
AGTTCATTGAATAGTGGTGACTGTTTCCTTTTGGATGCAGGTTTAACTATTTATCAATTC
AATGGTAGTAAATCAAGTCCACAAGAAAAGAATAAAGCCGCTGAAGTTGCACGTGCAATC
GATGCAGAAAGAAAAGGTTTACCAAAAGTTGAAGTTTTCTGTGAAACCGATTCCGATATT
CCAGCTGAATTTTGGAAACTTTTAGGTGGAAAAGGTGCAATCGCTGCTAAACACGAAACT
GCCCCAACCAAATCTGAAAAAGTTTTATACAAATTATCAGATGCATCTGGTTCACTTAAA
TTCTCTGAAGTTTCACGTGGTAAAATCAATAAATCCTCATTAAAATCTGAAGATGTTTTC
ATCATTGATTTAGGTAATGAAATCTATACTTGGATCGGTTCAAAATCATCACCAAATGAA
AAGAAAACAGCATTCAGTCATGCAACTCAATACTTGGTAAACAATAAACGTTGTGAATAT
ACTCCAATAGTTAGAGTTTTAGAAAATGGTACAAATCAATCATTTGAAACTTTATTATCT
GCTTAATAATAAAACACAACAACAACAACAACACATTCAAAAAATCAATTTGTATCATAA
AATAAAATAAAATATAAACTTT
Length of connected seq. 1332
Full length Seq ID SFJ809E
Full length Seq.
>SFJ809E.Seq
AATTTAAAAAACAATTATAAAAACAACAAATACAAAAATGATTAAGAATAGAAAATTAGA
TATTACTTCAACTAATGTTGCTGGTATTGGAACAGATTTAGATAAAAAATGTAGATTGGA
TGCAGCTTCAACTGAAGCTCAATGGAAAGGTGTTGGTCAAGCACCAGGTCTCAAGATTTG
GAGAATTGAAAATTTTAAAGTTGTCCCAGTTCCAGAATCATCATATGGTAAATTCTATGA
TGGTGATAGTTATATCATTTTACATACTTTTAAAGAAGGTAATTCACTTAAACATGATAT
TCATTTCTTTTTAGGTACTTTTACTACTCAAGATGAAGCTGGCACTGCTGCTTATAAAAC
AGTTGAATTAGATGATTTCTTAGGTGGTGCACCAATTCAATATCGTCAATGTCAATCATA
TGAAAGTCCAAGCTTTTTATCATTATTCCCAAAATATTTCATTTTATCAGGTGGTGTTGA
ATCAGGATTTAATCATGTTAAACCANCAGAATATAAACCAAGATTATTACATATTAGTGG
TGATAAGAATGCTAAAGTCGCTTGAAGTACCATTGGCAACCAGTTCATTGAATAGTGGTG
ACTGTTTCCTTTTGGATGCAGGTTTAACTATTTATCAATTCAATGGTAGTAAATCAAGTC
CACAAGAAAAGAATAAAGCCGCTGAAGTTGCACGTGCAATCGATGCAGAAAGAAAAGGTT
TACCAAAAGTTGAAGTTTTCTGTGAAACCGATTCCGATATTCCAGCTGAATTTTGGAAAC
TTTTAGGTGGAAAAGGTGCAATCGCTGCTAAACACGAAACTGCCCCAACCAAATCTGAAA
AAGTTTTATACAAATTATCAGATGCATCTGGTTCACTTAAATTCTCTGAAGTTTCACGTG
GTAAAATCAATAAATCCTCATTAAAATCTGAAGATGTTTTCATCATTGATTTAGGTAATG
AAATCTATACTTGGATCGGTTCAAAATCATCACCAAATGAAAAGAAAACAGCATTCAGTC
ATGCAACTCAATACTTGGTAAACAATAAACGTTGTGAATATACTCCAATAGTTAGAGTTT
TAGAAAATGGTACAAATCAATCATTTGAAACTTTATTATCTGCTTAATAATAAAACACAA
CAACAACAACAACACATTCAAAAAATCAATTTGTATCATAAAATAAAATAAAATATAAAC
TTT
Length of full length seq. 1203