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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFJ805
Library SF
(Link to library)
Clone ID SFJ805
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12939-1|Contig-U16593-1
Original site URL
Representative seq. ID SFJ805P
(Link to Original site)
Representative DNA sequence 
>SFJ805 (SFJ805Q) /CSM/SF/SFJ8-A/SFJ805Q.Seq.d/
AAATTTCACAACCAGCAAAAAATAAAAATAAAAAAAAATATAAAAAAATAAAAAGTTGAA
GGAATTTTCACAAAGTCTTTAAAAAAATTAAAAAAAGAAAAAAAAAAXXXXXXXXXXTCA
ACTGGTTCATTAGAAGGTACCAACTGTGTCACCAACGGTGAATTAGTCTCCCTCTCTGAA
CAACAATTAGTTGATTGTGCTATCCTTACCGGTAGTCAAGGTTGTGGTGGTGGTTTTGCA
TCATCTGCATTCCAATACGTCATGGAAATTGGTAGTCTCGCCACCGAGTCCAACTATCCA
TACTTAATGCAAAATGGTCTCTGCAGAGATAGAACTGTCACTCCATCAGGTGTTTCAATC
ACTGGTTACGTCAATGTTACCTCTGGTAGTGAATCTGCCCTTCAAAACGCTATCGCCACC
ACTGGTCCAGTCGCCATCGCCATCGATGCCTCTGTTGATGATTTCCGTTACTACATGTCT
GGTGTTTACAATAATCCAGCCTGTAAAAATGGTTTAGATGATTTGGATCACGAAGTTTTA
GCTATTGGTTATGGTACTTATCAAGGTCAAGATTATTTCTTAGTTAAAAACTCTTGGTCA
ACTAACTGGGGTATGGATGGTTATGTTTACATGGCTAGNAATGATAACAATTTATGTGGT
GTTTCAAGTCAAGCCACCTATCCAATTCCAACAAAGAATTAAATTTCTTCAATAAATCCA
ATAAATATATATTT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
kfhnqqkikikknikk*KVEGIFTKSLKKLKKEKK---

---STGSLEGTNCVTNGELVSLSEQQLVDCAILTGSQGCGGGFASSAFQYVMEIGSLATE
SNYPYLMQNGLCRDRTVTPSGVSITGYVNVTSGSESALQNAIATTGPVAIAIDASVDDFR
YYMSGVYNNPACKNGLDDLDHEVLAIGYGTYQGQDYFLVKNSWSTNWGMDGYVYMAXNDN
NLCGVSSQATYPIPTKN*issinpiniy
Translated Amino Acid sequence (All Frames) 
Frame A:
kfhnqqkikikknikk*KVEGIFTKSLKKLKKEKK---

---STGSLEGTNCVTNGELVSLSEQQLVDCAILTGSQGCGGGFASSAFQYVMEIGSLATE
SNYPYLMQNGLCRDRTVTPSGVSITGYVNVTSGSESALQNAIATTGPVAIAIDASVDDFR
YYMSGVYNNPACKNGLDDLDHEVLAIGYGTYQGQDYFLVKNSWSTNWGMDGYVYMAXNDN
NLCGVSSQATYPIPTKN*issinpiniy

Frame B:
nfttskk*k*kki*knkklkefsqsl*kn*kkkkk---

---qlvh*kvptvsptvn*spslnnn*livlslpvvkvvvvvlhhlhsntswklvvspps
ptiht*ckmvsaeielslhqvfqslvtsmlplvvnlpfktlspplvqspspsmpllmisv
ttclvftiiqpvkmv*miwitkf*llvmvlikvkiis*lktlgqltgvwmvmftwlxmit
iyvvfqvkppiqfqqrikflq*iq*iyi

Frame C:
isqpaknknkkkykkiks*rnfhkvfkkikkrkkk---

---nwfirryqlchqr*islpl*ttis*lcypyr*srlwwwfciicipirhgnw*srhrv
qlsilnakwslqr*nchsircfnhwlrqcylw**icpskryrhhwssrhrhrclc**fpl
lhvwclq*ssl*kwfr*fgsrsfsywlwylsrsrlfls*kllvn*lgygwlclhg*x**q
fmwcfksshlsnsnkelnffnksnkyif
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFM638 (VFM638Q) /CSM/VF/VFM6-B/VFM638Q.Seq.d/                       1217   0.0
VFI581 (VFI581Q) /CSM/VF/VFI5-D/VFI581Q.Seq.d/                       1217   0.0
VFH711 (VFH711Q) /CSM/VF/VFH7-A/VFH711Q.Seq.d/                       1217   0.0
VFG444 (VFG444Q) /CSM/VF/VFG4-B/VFG444Q.Seq.d/                       1217   0.0
SFJ805 (SFJ805Q) /CSM/SF/SFJ8-A/SFJ805Q.Seq.d/                       1217   0.0
FC-AN13 (FC-AN13Q) /CSM/FC/FC-AN/FC-AN13Q.Seq.d/                     1217   0.0
CFC321 (CFC321Q) /CSM/CF/CFC3-A/CFC321Q.Seq.d/                       1217   0.0
AFE412 (AFE412Q) /CSM/AF/AFE4-A/AFE412Q.Seq.d/                       1217   0.0
SFF792 (SFF792Q) /CSM/SF/SFF7-D/SFF792Q.Seq.d/                       1211   0.0
SFE845 (SFE845Q) /CSM/SF/SFE8-B/SFE845Q.Seq.d/                       1211   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X87213|X87213.1 E.dispar mRNA for cysteine proteinase.             54   0.003  1
X87214|X87214.1 E.histolytica mRNA for cysteine proteinase.        54   0.003  1
S58669|S58669.1 Entamoeba histolytica cysteine proteinase precursor (ACP1) gene, partial cds.    54   0.003  1
AZ547119|AZ547119.1 ENTFS26TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    54   0.003  1
AZ674505|AZ674505.1 ENTIZ88TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    54   0.003  1
M27307|M27307.1 Entamoeba histolytica cysteine protease gene, partial cds.    54   0.003  1
CR391952|CR391952.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-194B7.    40   0.010  6
BM166059|BM166059.1 EST568582 PyBS Plasmodium yoelii yoelii cDNA clone PYCNC01 5' end, mRNA sequence.    48   0.19   1
BF296929|BF296929.1 044PbF11 Pb cDNA #17, Tommaso Pace, Marta Ponzi, and Clara Frontali Plasmodium berghei cDNA 5', mRNA sequence.    48   0.19   1
CR352216|CR352216.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    48   0.19   1
dna update 2004. 5.30
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC075887_1(BC075887|pid:none) Danio rerio cathepsin L.1, mRNA (c...   200   4e-50
D82884_1(D82884|pid:none) Sitophilus zeamais mRNA for cysteine p...   190   3e-47
AY363263_1(AY363263|pid:none) Triatoma infestans cathepsin L-lik...   190   4e-47
AY220615_1(AY220615|pid:none) Hydra vulgaris cathepsin L precurs...   189   7e-47
DQ280314_1(DQ280314|pid:none) Hymeniacidon perlevis cathepsin L ...   189   1e-46
AY336798_1(AY336798|pid:none) Rhipicephalus haemaphysaloides hae...   187   3e-46
(P13277) RecName: Full=Digestive cysteine proteinase 1;         ...   186   5e-46
EF070511_1(EF070511|pid:none) Maconellicoccus hirsutus clone WHM...   186   5e-46
AY795054_1(AY795054|pid:none) Artemia franciscana cathepsin L pr...   186   6e-46
AF194426_1(AF194426|pid:none) Myxine glutinosa clone hicl20 cyst...   186   8e-46
protein update 2009. 5.27
PSORT 

 psg: 0.25  gvh: 0.59  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 28.0 %: nuclear
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for SFJ805 is cyt
5' end seq. ID SFJ805F
5' end seq. 
>SFJ805F.Seq
AAATTTCACAACCAGCAAAAAATAAAAATAAAAAAAAATATAAAAAAATAAAAAGTTGAA
GGAATTTTCACAAAGTCTTTAAAAAAATTAAAAAAAGAAAAAAAAAA----------
Length of 5' end seq. 107
3' end seq. ID SFJ805Z
3' end seq. 
>SFJ805Z.Seq
----------TCAACTGGTTCATTAGAAGGTACCAACTGTGTCACCAACGGTGAATTAGT
CTCCCTCTCTGAACAACAATTAGTTGATTGTGCTATCCTTACCGGTAGTCAAGGTTGTGG
TGGTGGTTTTGCATCATCTGCATTCCAATACGTCATGGAAATTGGTAGTCTCGCCACCGA
GTCCAACTATCCATACTTAATGCAAAATGGTCTCTGCAGAGATAGAACTGTCACTCCATC
AGGTGTTTCAATCACTGGTTACGTCAATGTTACCTCTGGTAGTGAATCTGCCCTTCAAAA
CGCTATCGCCACCACTGGTCCAGTCGCCATCGCCATCGATGCCTCTGTTGATGATTTCCG
TTACTACATGTCTGGTGTTTACAATAATCCAGCCTGTAAAAATGGTTTAGATGATTTGGA
TCACGAAGTTTTAGCTATTGGTTATGGTACTTATCAAGGTCAAGATTATTTCTTAGTTAA
AAACTCTTGGTCAACTAACTGGGGTATGGATGGTTATGTTTACATGGCTAGNAATGATAA
CAATTTATGTGGTGTTTCAAGTCAAGCCACCTATCCAATTCCAACAAAGAATTAAATTTC
TTCAATAAATCCAATAAATATATATTT
Length of 3' end seq. 617
Connected seq. ID SFJ805P
Connected seq. 
>SFJ805P.Seq
AAATTTCACAACCAGCAAAAAATAAAAATAAAAAAAAATATAAAAAAATAAAAAGTTGAA
GGAATTTTCACAAAGTCTTTAAAAAAATTAAAAAAAGAAAAAAAAAA----------TCA
ACTGGTTCATTAGAAGGTACCAACTGTGTCACCAACGGTGAATTAGTCTCCCTCTCTGAA
CAACAATTAGTTGATTGTGCTATCCTTACCGGTAGTCAAGGTTGTGGTGGTGGTTTTGCA
TCATCTGCATTCCAATACGTCATGGAAATTGGTAGTCTCGCCACCGAGTCCAACTATCCA
TACTTAATGCAAAATGGTCTCTGCAGAGATAGAACTGTCACTCCATCAGGTGTTTCAATC
ACTGGTTACGTCAATGTTACCTCTGGTAGTGAATCTGCCCTTCAAAACGCTATCGCCACC
ACTGGTCCAGTCGCCATCGCCATCGATGCCTCTGTTGATGATTTCCGTTACTACATGTCT
GGTGTTTACAATAATCCAGCCTGTAAAAATGGTTTAGATGATTTGGATCACGAAGTTTTA
GCTATTGGTTATGGTACTTATCAAGGTCAAGATTATTTCTTAGTTAAAAACTCTTGGTCA
ACTAACTGGGGTATGGATGGTTATGTTTACATGGCTAGNAATGATAACAATTTATGTGGT
GTTTCAAGTCAAGCCACCTATCCAATTCCAACAAAGAATTAAATTTCTTCAATAAATCCA
ATAAATATATATTT
Length of connected seq. 724
Full length Seq ID -
Full length Seq. -
Length of full length seq. -