SFJ773 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

SFJ773
Library	SF (Link to library)
Clone ID	SFJ773 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U02347-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/SF/SFJ7-D/SFJ773Q.Seq.d/
Representative seq. ID	SFJ773P (Link to Original site)
Representative DNA sequence	>SFJ773 (SFJ773Q) /CSM/SF/SFJ7-D/SFJ773Q.Seq.d/ GAAAAACTTTTAAAAATAAAATGATGGAAACAAATAATGAAAATAAAGAAAAATTAAAAT TATATACTTGGGATGAAGTATCAAAACATAATCAAAAAAATGATTTATGGATTATAGTTG ATGGTAAAGTTTATAATATTACAAAATGGGTACCATTACATCCAGGTGGTGAAGATATAT TATTATTATCAGCAGGTAGAGATGCAACAAATTTATTTGAAAGTTATCATCCAATGACGG ATAAACACTATTCCTTAATTAAACAATATGAAATTGGATATATATCATCATATGAACATC CAAAATATGTTGAAAAAAGTGAATTCTATTCTACATTGAAACAACGTGTTAGAAAACATT TCCAAACTTCATCACAAGATCCAAAAGTTTCAGTTGGAGTTTTCACAAGAATGGTGTTAA TTTATTTATTCCTATTTGTTACTTACTATTTATCACAATTCTCTACGGATAGATTTTGGT TAAATTGTATATTCGCTGTTTTATATGGTGTTGCAAATTCGTTATTTGGATTACACACGA TGCATGACGCTTGCCACACAGCAATCACTCATAATCCAATGACTTGGAAAATATTGGGTG CAACATTTGATTTGTTCGCTGGTGCTTCATTCTATGCATGGTGTCATCAACATGTGATTG GGCATCATTTATATACAAATGTAAGAAATGCAGAXXXXXXXXXXAGATCACGAAATCTTT ACAAAGAAATCAAATGGTGCAATTAGATATTCACCAATATCAACGATTGATACTGCAATT TTCATACTTGGTAAATTGGTTTTCATTATCTCTCGTTTCATACTCCCATTAATCTATAAT CATTCATTCTCTCATTTAATTTGTTTCTTCCTAATCTCTGAATTGGTTTTAGGTTGGTAT TTAGCCATTTCTTTTCAAGTTAGTCATGTAGTTGAAGATCTTCAATTCATGGCAACACCT GAAATTTTCGATGGTGCTGATCACCCATTACCAACAACCTTCAATCAAGATTGGGCAATT CTTCAAGTTAAAACTACTCAAGATTATGCTCAAGATTCAGTTTTAAGTACTTTCTTTTCT GGTGGTTTAAATTTACAAGTTATTCATCATTGTTTCCCAACAATTGCTCAAGATTATTAC CCACAAATTGTTCCAATTCTTAAAGAAGTTTGTAAAGAATATAATGTTACATATCATTAT AAGCCAACATTTACTGAAGCAATAAAGTCTCATATCAACTATCTTTACAAAATGGGTAAT GATCCAGACTATGTCAGAAAACCAGTAAACAAAAACGATTAATCAAACTGTATTATCTCT TCTTAATTTCAAATTATTAGTTTATATCTCTTTATTTTATTTTTTTAAAAAAAATTGTTT AGAAAAATGAATCCAAGAAATAAAATCAATTTTAT
sequence update	2001. 6. 1
Translated Amino Acid sequence	KTFKNKMMETNNENKEKLKLYTWDEVSKHNQKNDLWIIVDGKVYNITKWVPLHPGGEDIL LLSAGRDATNLFESYHPMTDKHYSLIKQYEIGYISSYEHPKYVEKSEFYSTLKQRVRKHF QTSSQDPKVSVGVFTRMVLIYLFLFVTYYLSQFSTDRFWLNCIFAVLYGVANSLFGLHTM HDACHTAITHNPMTWKILGATFDLFAGASFYAWCHQHVIGHHLYTNVRNA--- ---DHEIFTKKSNGAIRYSPISTIDTAIFILGKLVFIISRFILPLIYNHSFSHLICFFLI SELVLGWYLAISFQVSHVVEDLQFMATPEIFDGADHPLPTTFNQDWAILQVKTTQDYAQD SVLSTFFSGGLNLQVIHHCFPTIAQDYYPQIVPILKEVCKEYNVTYHYKPTFTEAIKSHI NYLYKMGNDPDYVRKPVNKNDsnciissfqiislylfilff*kklfrkmnprnkinf
Translated Amino Acid sequence (All Frames)	Frame A: ekllkikwkqimkikknnyilgmkyqniikkmiygllmvkfiilqngyhyiqvvkiy yyyqqvemqqiylkviiqrintiplnnmkldiyhhmniqnmlkkvnsilhnnvleni sklhhkiqkfqlefsqewcfiysyllltiyhnslridfgivyslfymvlqiryldytr cmtlatqqsliiqlgkywvqhlicslvlhsmhgvinmlgiiyiqmemq--- ---rsrnlykeikwcniftnindycnfhtwigfhylsfhtpinlsfilsfnlflpn ligfrlvfshffssscsrssihgntnfrwcspitnnlqsrlgnsssnysrlcsr fsfkyflfwwfkftsysslfpnncsrllptncsnsrslricyislaniysnkvsy qlslqng*srlcqktskqkrliklyylflisnyfislyfiflkkivkneskknqfy Frame B: knfkndgnk*krkikiiylgsiktskkfmdyswslyykmgtitsrwryi iiisrrcnkfiklssndgtlflntinwiyiiitskickkilfyiettcktf pnfitrsksfswsfhkngvnlfipicyllfitilygilvklyircfiwcckfviwithd arlphsnhssndlenigcnifvrwcfilcmvsstcdwasfiykckkcr--- ---DHEIFTKKSNGAIRYSPISTIDTAIFILGKLVFIISRFILPLIYNHSFSHLICFFLI SELVLGWYLAISFQVSHVVEDLQFMATPEIFDGADHPLPTTFNQDWAILQVKTTQDYAQD SVLSTFFSGGLNLQVIHHCFPTIAQDYYPQIVPILKEVCKEYNVTYHYKPTFTEAIKSHI NYLYKMGNDPDYVRKPVNKNDsnciissfqiislylfilffkklfrkmnprnkinf Frame C: KTFKNKMMETNNENKEKLKLYTWDEVSKHNQKNDLWIIVDGKVYNITKWVPLHPGGEDIL LLSAGRDATNLFESYHPMTDKHYSLIKQYEIGYISSYEHPKYVEKSEFYSTLKQRVRKHF QTSSQDPKVSVGVFTRMVLIYLFLFVTYYLSQFSTDRFWLNCIFAVLYGVANSLFGLHTM HDACHTAITHNPMTWKILGATFDLFAGASFYAWCHQHVIGHHLYTNVRNA--- ---itkslqrnqmvqldihqyqrlilqfsylvnwfslslvsyshsiiihslifvsss lnwfvgipflfklvmlkifnswqhlkfsmvlithyqqpsikigqffklkllkimlki qfvlsflvviyklfiivsqqllkiithklfqflkkfvknimlhiiisqhllkqslis tiftkwvmiqtmsenqtktinqtvlsllnfkllvyislfyffkknclekiqeiksil
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value SFJ773 (SFJ773Q) /CSM/SF/SFJ7-D/SFJ773Q.Seq.d/ 2537 0.0 SSG614 (SSG614Q) /CSM/SS/SSG6-A/SSG614Q.Seq.d/ 1348 0.0 SFF147 (SFF147Q) /CSM/SF/SFF1-B/SFF147Q.Seq.d/ 1285 0.0 CFB188 (CFB188Q) /CSM/CF/CFB1-D/CFB188Q.Seq.d/ 1265 0.0 SFG336 (SFG336Q) /CSM/SF/SFG3-B/SFG336Q.Seq.d/ 1154 0.0 VSD576 (VSD576Q) /CSM/VS/VSD5-D/VSD576Q.Seq.d/ 1065 0.0 SSD596 (SSD596Q) /CSM/SS/SSD5-D/SSD596Q.Seq.d/ 670 0.0 AFA237 (AFA237Q) /CSM/AF/AFA2-B/AFA237Q.Seq.d/ 575 e-163 VSF803 (VSF803Q) /CSM/VS/VSF8-A/VSF803Q.Seq.d/ 149 1e-34 VFO589 (VFO589Q) /CSM/VF/VFO5-D/VFO589Q.Seq.d/ 149 1e-34
own update	2004.12.25
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AB022097\|AB022097.1 Dictyostelium discoideum FadB mRNA for delta 5 fatty acid desaturase, complete cds. 1312 0.0 3 AB029311\|AB029311.1 Dictyostelium discoideum Dd des5 gene for fatty acid desaturase, complete cds. 113 e-114 12 BD092935\|BD092935.1 Methods and compositions for synthesis of long chain polyunsaturated fatty acids in plants. 90 2e-46 6 BD082645\|BD082645.1 Methods and compositions for synthesis of long chain polyunsaturated fatty acids. 90 2e-46 6 BD082630\|BD082630.1 Methods and compositions for synthesis of long chain poly-unsaturated fatty acids. 90 2e-46 6 CR382400\|CR382400.1 Plasmodium falciparum chromosome 6, complete sequence; segment 3/5. 36 8e-10 20 AE014830\|AE014830.1 Plasmodium falciparum 3D7 chromosome 10 section 2 of 7 of the complete sequence. 38 1e-09 16 CR382399\|CR382399.1 Plasmodium falciparum chromosome 6, complete sequence; segment 2/5. 32 4e-07 20 AC117080\|AC117080.2 Dictyostelium discoideum chromosome 2 map complement(821514-735598) strain AX4, complete sequence. 36 3e-06 13 AC115682\|AC115682.2 Dictyostelium discoideum chromosome 2 map 4101105-4158643 strain AX4, complete sequence. 34 4e-06 11
dna update	2004. 5.29
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value (O96099) RecName: Full=Delta(5) fatty acid desaturase B; ... 448 e-124 (Q9Y1W0) RecName: Full=Delta(5) fatty acid desaturase A; ... 327 8e-88 (Q1ZXQ5) RecName: Full=Probable Delta(5) fatty acid desaturase C... 298 3e-79 (O74212) RecName: Full=Delta(5) fatty acid desaturase; ... 194 6e-48 AB188307_1(AB188307\|pid:none) Mortierella alpina gene for delta5... 187 6e-46 AF419297_1(AF419297\|pid:none) Pythium irregulare delta-5 fatty a... 179 3e-43 AM949596_1(AM949596\|pid:none) Mantoniella squamata d5 gene for A... 148 5e-34 EF678404_1(EF678404\|pid:none) Picea sitchensis clone WS0291_A04 ... 147 1e-33 CQ831428_1(CQ831428\|pid:none) Sequence 9 from Patent WO2004057001. 139 3e-31 CP001574_328(CP001574\|pid:none) Micromonas sp. RCC299 chromosome... 135 5e-30
protein update	2009. 5.27
PSORT	psg: 0.27 gvh: 0.18 alm: 0.25 top: 0.47 tms: 0.27 mit: 0.27 mip: 0.00 nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 1.00 m3b: 0.00 m_ : 0.00 52.0 %: plasma membrane 28.0 %: endoplasmic reticulum 12.0 %: mitochondrial 4.0 %: nuclear 4.0 %: peroxisomal >> prediction for SFJ773 is pla
5' end seq. ID	SFJ773F
5' end seq.	>SFJ773F.Seq GAAAAACTTTTAAAAATAAAATGATGGAAACAAATAATGAAAATAAAGAAAAATTAAAAT TATATACTTGGGATGAAGTATCAAAACATAATCAAAAAAATGATTTATGGATTATAGTTG ATGGTAAAGTTTATAATATTACAAAATGGGTACCATTACATCCAGGTGGTGAAGATATAT TATTATTATCAGCAGGTAGAGATGCAACAAATTTATTTGAAAGTTATCATCCAATGACGG ATAAACACTATTCCTTAATTAAACAATATGAAATTGGATATATATCATCATATGAACATC CAAAATATGTTGAAAAAAGTGAATTCTATTCTACATTGAAACAACGTGTTAGAAAACATT TCCAAACTTCATCACAAGATCCAAAAGTTTCAGTTGGAGTTTTCACAAGAATGGTGTTAA TTTATTTATTCCTATTTGTTACTTACTATTTATCACAATTCTCTACGGATAGATTTTGGT TAAATTGTATATTCGCTGTTTTATATGGTGTTGCAAATTCGTTATTTGGATTACACACGA TGCATGACGCTTGCCACACAGCAATCACTCATAATCCAATGACTTGGAAAATATTGGGTG CAACATTTGATTTGTTCGCTGGTGCTTCATTCTATGCATGGTGTCATCAACATGTGATTG GGCATCATTTATATACAAATGTAAGAAATGCAGA----------
Length of 5' end seq.	694
3' end seq. ID	SFJ773Z
3' end seq.	>SFJ773Z.Seq ----------AGATCACGAAATCTTTACAAAGAAATCAAATGGTGCAATTAGATATTCAC CAATATCAACGATTGATACTGCAATTTTCATACTTGGTAAATTGGTTTTCATTATCTCTC GTTTCATACTCCCATTAATCTATAATCATTCATTCTCTCATTTAATTTGTTTCTTCCTAA TCTCTGAATTGGTTTTAGGTTGGTATTTAGCCATTTCTTTTCAAGTTAGTCATGTAGTTG AAGATCTTCAATTCATGGCAACACCTGAAATTTTCGATGGTGCTGATCACCCATTACCAA CAACCTTCAATCAAGATTGGGCAATTCTTCAAGTTAAAACTACTCAAGATTATGCTCAAG ATTCAGTTTTAAGTACTTTCTTTTCTGGTGGTTTAAATTTACAAGTTATTCATCATTGTT TCCCAACAATTGCTCAAGATTATTACCCACAAATTGTTCCAATTCTTAAAGAAGTTTGTA AAGAATATAATGTTACATATCATTATAAGCCAACATTTACTGAAGCAATAAAGTCTCATA TCAACTATCTTTACAAAATGGGTAATGATCCAGACTATGTCAGAAAACCAGTAAACAAAA ACGATTAATCAAACTGTATTATCTCTTCTTAATTTCAAATTATTAGTTTATATCTCTTTA TTTTATTTTTTTAAAAAAAATTGTTTAGAAAAATGAATCCAAGAAATAAAATCAATTTTA T
Length of 3' end seq.	711
Connected seq. ID	SFJ773P
Connected seq.	>SFJ773P.Seq GAAAAACTTTTAAAAATAAAATGATGGAAACAAATAATGAAAATAAAGAAAAATTAAAAT TATATACTTGGGATGAAGTATCAAAACATAATCAAAAAAATGATTTATGGATTATAGTTG ATGGTAAAGTTTATAATATTACAAAATGGGTACCATTACATCCAGGTGGTGAAGATATAT TATTATTATCAGCAGGTAGAGATGCAACAAATTTATTTGAAAGTTATCATCCAATGACGG ATAAACACTATTCCTTAATTAAACAATATGAAATTGGATATATATCATCATATGAACATC CAAAATATGTTGAAAAAAGTGAATTCTATTCTACATTGAAACAACGTGTTAGAAAACATT TCCAAACTTCATCACAAGATCCAAAAGTTTCAGTTGGAGTTTTCACAAGAATGGTGTTAA TTTATTTATTCCTATTTGTTACTTACTATTTATCACAATTCTCTACGGATAGATTTTGGT TAAATTGTATATTCGCTGTTTTATATGGTGTTGCAAATTCGTTATTTGGATTACACACGA TGCATGACGCTTGCCACACAGCAATCACTCATAATCCAATGACTTGGAAAATATTGGGTG CAACATTTGATTTGTTCGCTGGTGCTTCATTCTATGCATGGTGTCATCAACATGTGATTG GGCATCATTTATATACAAATGTAAGAAATGCAGA----------AGATCACGAAATCTTT ACAAAGAAATCAAATGGTGCAATTAGATATTCACCAATATCAACGATTGATACTGCAATT TTCATACTTGGTAAATTGGTTTTCATTATCTCTCGTTTCATACTCCCATTAATCTATAAT CATTCATTCTCTCATTTAATTTGTTTCTTCCTAATCTCTGAATTGGTTTTAGGTTGGTAT TTAGCCATTTCTTTTCAAGTTAGTCATGTAGTTGAAGATCTTCAATTCATGGCAACACCT GAAATTTTCGATGGTGCTGATCACCCATTACCAACAACCTTCAATCAAGATTGGGCAATT CTTCAAGTTAAAACTACTCAAGATTATGCTCAAGATTCAGTTTTAAGTACTTTCTTTTCT GGTGGTTTAAATTTACAAGTTATTCATCATTGTTTCCCAACAATTGCTCAAGATTATTAC CCACAAATTGTTCCAATTCTTAAAGAAGTTTGTAAAGAATATAATGTTACATATCATTAT AAGCCAACATTTACTGAAGCAATAAAGTCTCATATCAACTATCTTTACAAAATGGGTAAT GATCCAGACTATGTCAGAAAACCAGTAAACAAAAACGATTAATCAAACTGTATTATCTCT TCTTAATTTCAAATTATTAGTTTATATCTCTTTATTTTATTTTTTTAAAAAAAATTGTTT AGAAAAATGAATCCAAGAAATAAAATCAATTTTAT
Length of connected seq.	1405
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas