NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFJ770
Library SF
(Link to library)
Clone ID SFJ770
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10734-1
Original site URL
Representative seq. ID SFJ770P
(Link to Original site)
Representative DNA sequence 
>SFJ770 (SFJ770Q) /CSM/SF/SFJ7-C/SFJ770Q.Seq.d/
CTAAATCGATTGATATACCGAAAGTAACAGAAGATTATCTGTCAGTTTGTTATATAATGA
CATTATTGCTAGTAGGTCTTCTGATATCATTTGTTATTTGTTTTAGCTTTGTTTGCTAAT
ATTGCTTTTTCATGTGAAGGTCACCCAGAACATGATCATGGTGATGGTGATCATGAACAT
GATCATGATGAATCATTTGTTAAAATCTTAGATTCTGATAATTTCCATAATTCAGTTTCT
GAACATGACGTAACTCTTGTTATGTTTTATGCCCCATGGTGCGGTCATTGTAAAACTTTA
AAACCATTATATGAAGAAGCTGCTAAACAATTATCAGCCAACAAAAAGATTGCAATTGCA
AAAGTTGATTGTACTCAACATGAACAACTCTGTAAACAAAATAAAGTTCAAGGTTATCCA
ACTTTAGTTGTTTTCAAGAATGGTAAAGCTGAACCATATGAAGGTGATAGAACCACTAAA
TCAATTGTTCAAACTTTAGAAGAAGAATTAAAACCAACTATTTCAACTTTAGAATCAAAT
GAAGATATTGAAGAATTTAAAAAACAACACCCAAXXXXXXXXXXAGTTGTTCCAGCCATC
TCTGTTGATTCAGTTGCCAATAAAGCTCGTTACAATTTCGATGAAAAAGAAACCTTCTCA
TTCGATACCGTCTCCAAATGGATCCAAGATGTCATTGGTGGTAAAGTTTCTCCATTTGTT
AAATCTCAACCAGAACCAGAATCAAATGATGCTCCAGTTAAGATTGCCGTTGGTACCACT
TTCAAAAAGTTGGTTTTAGACTCACCAAAGGATGTTTTGGTTGAATTCTACGCTCCATGG
TGCGGTCATTGCAAGAATCTTGCTCCAATCTACGATAAATTAGGTGAATACTTAAAAGAC
GTTGAATCTGTCTCAATCGTAAAGATTGATGCCGACTCAAATGATGTACCAAGTGATATC
GAAATTAGAGGTTACCCAACCATCATGCTCTTCAAAGCTGATGACAAAGAAAATCCAATC
TCTTATGAAGGTCAAAGAAATGATCATATGAACTTTGTTGAATTCATTCAAGATAACGCT
GCCATTGAATTCAAATTACCATCATCTCAAACTGATGATAATGTNAATCTAAAAAAGATT
CTTCTGCTAAACA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
lnrliyrk*qkiicqfvi**hyc**vf*YHLLFVLALFANIAFSCEGHPEHDHGDGDHEH
DHDESFVKILDSDNFHNSVSEHDVTLVMFYAPWCGHCKTLKPLYEEAAKQLSANKKIAIA
KVDCTQHEQLCKQNKVQGYPTLVVFKNGKAEPYEGDRTTKSIVQTLEEELKPTISTLESN
EDIEEFKKQHP---

---VVPAISVDSVANKARYNFDEKETFSFDTVSKWIQDVIGGKVSPFVKSQPEPESNDAP
VKIAVGTTFKKLVLDSPKDVLVEFYAPWCGHCKNLAPIYDKLGEYLKDVESVSIVKIDAD
SNDVPSDIEIRGYPTIMLFKADDKENPISYEGQRNDHMNFVEFIQDNAAIEFKLPSSQTD
DNVNLKKILLLN
Translated Amino Acid sequence (All Frames) 
Frame A:
lnrliyrk*qkiicqfvi**hyc**vf*YHLLFVLALFANIAFSCEGHPEHDHGDGDHEH
DHDESFVKILDSDNFHNSVSEHDVTLVMFYAPWCGHCKTLKPLYEEAAKQLSANKKIAIA
KVDCTQHEQLCKQNKVQGYPTLVVFKNGKAEPYEGDRTTKSIVQTLEEELKPTISTLESN
EDIEEFKKQHP---

---scsshlc*fscq*sslqfr*krnlliryrlqmdprchww*sfsic*istrtrik*cs
s*dcrwyhfqkvgfrltkgcfg*ilrsmvrslqescsnlr*ir*ilkrr*iclnrkd*cr
lk*ctk*yrn*rlpnhhalqs**qrksnll*rskk*syelc*ihsr*rch*iqitiisn*
**cxskkdssak

Frame B:
*id*ytesnrrlsvsllyndiiasrssdiicylf*lcllillfhvkvtqnmimvmvimnm
immnhllks*iliisiiqflnmt*lllcfmphgavivkl*nhymkkllnnyqptkrlqlq
klivlnmnnsvnkikfkviql*lfsrmvklnhmkvieplnqlfkl*kkn*nqlfql*nqm
kilknlknntq---

---VVPAISVDSVANKARYNFDEKETFSFDTVSKWIQDVIGGKVSPFVKSQPEPESNDAP
VKIAVGTTFKKLVLDSPKDVLVEFYAPWCGHCKNLAPIYDKLGEYLKDVESVSIVKIDAD
SNDVPSDIEIRGYPTIMLFKADDKENPISYEGQRNDHMNFVEFIQDNAAIEFKLPSSQTD
DNVNLKKILLLN

Frame C:
ksidipkvtedylsvcyimtlllvgllisfvicfsfvc*ycffm*rsprt*sw*w*s*t*
s**iic*nlrf**fp*fsf*t*rnscyvlcpmvrsl*nfktii*rsc*tiisqqkdcnck
s*lyst*ttl*tk*ssrlsnfscfqew*s*ti*r**nh*incsnfrrriktnyfnfrik*
ry*ri*kttp---

---lfqpslliqlpiklvtismkkkpshsipspngskmslvvkflhllnlnqnqnqmmlq
lrlplvplskswf*thqrmfwlnstlhgaviarillqstin*vnt*ktlnlsqs*rlmpt
qmmyqvisklevtqpscssklmtkkiqslmkvkemii*tllnsfkitlplnsnyhhlklm
imxi*krffc*t
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFJ770 (SFJ770Q) /CSM/SF/SFJ7-C/SFJ770Q.Seq.d/                       2220   0.0
AFO479 (AFO479Q) /CSM/AF/AFO4-D/AFO479Q.Seq.d/                       1122   0.0
VFL328 (VFL328Q) /CSM/VF/VFL3-B/VFL328Q.Seq.d/                       1114   0.0
VFK816 (VFK816Q) /CSM/VF/VFK8-A/VFK816Q.Seq.d/                       1114   0.0
VFK745 (VFK745Q) /CSM/VF/VFK7-B/VFK745Q.Seq.d/                       1114   0.0
SFL246 (SFL246Q) /CSM/SF/SFL2-B/SFL246Q.Seq.d/                       1114   0.0
SFK855 (SFK855Q) /CSM/SF/SFK8-C/SFK855Q.Seq.d/                       1114   0.0
SFI119 (SFI119Q) /CSM/SF/SFI1-A/SFI119Q.Seq.d/                       1114   0.0
AFO686 (AFO686Q) /CSM/AF/AFO6-D/AFO686Q.Seq.d/                       1114   0.0
AFO474 (AFO474Q) /CSM/AF/AFO4-D/AFO474Q.Seq.d/                       1114   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BJ171852|BJ171852.1 Physcomitrella patens subsp. patens cDNA clone:pph30f12, 3' end,single read.   591   e-165  1
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.   176   5e-40  13
CN206669|CN206669.1 Tor7097 Gametophyte rehydration Library Tortula ruralis cDNA, mRNA sequence.    78   3e-10  1
CN597971|CN597971.1 TTE00009997 Normalized large Tetrahymena thermophila cDNA, mRNA sequence.    74   5e-09  1
CN590755|CN590755.1 TTE00006978 Normalized large Tetrahymena thermophila cDNA, mRNA sequence.    74   5e-09  1
BM398179|BM398179.1 5009-0-41-G11.t.1 Chilcoat/Turkewitz cDNA (large fraction) Tetrahymena thermophila cDNA, mRNA sequence.    74   5e-09  1
CN591465|CN591465.1 TTE00010235 Normalized large Tetrahymena thermophila cDNA, mRNA sequence.    74   5e-09  1
BM898120|BM898120.1 ph59g02.y1 Ostertagia ostertagi L4 pAMP1 v1 Ostertagia ostertagi cDNA 5' similar to SW:ERP5_CAEEL Q11067 PROBABLE PROTEIN DISULFIDE ISOMERASE P5 PRECURSOR ;, mRNA sequence.    56   2e-08  2
BM897160|BM897160.1 ph57e02.y1 Ostertagia ostertagi L4 pAMP1 v1 Ostertagia ostertagi cDNA 5' similar to SW:ERP5_CAEEL Q11067 PROBABLE PROTEIN DISULFIDE ISOMERASE P5 PRECURSOR ;, mRNA sequence.    56   2e-08  2
CN206834|CN206834.1 Tor7258 Gametophyte rehydration Library Tortula ruralis cDNA, mRNA sequence.    70   8e-08  1
dna update 2004. 5.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41542_7(U41542|pid:none) Caenorhabditis elegans cosmid C07A12, ...   200   7e-50
BC076090_1(BC076090|pid:none) Danio rerio proteasome (prosome, m...   174   4e-42
EU016183_1(EU016183|pid:none) Haemaphysalis longicornis strain G...   172   1e-41
DQ066336_1(DQ066336|pid:none) Ixodes scapularis isolate IS-6-12-...   162   2e-38
DQ377176_1(DQ377176|pid:none) Amblyomma variegatum protein disul...   159   2e-37
(Q12730) RecName: Full=Protein disulfide-isomerase;          Sho...   155   3e-36
(Q00248) RecName: Full=Protein disulfide-isomerase;          Sho...   155   3e-36
AE013599_1413(AE013599|pid:none) Drosophila melanogaster chromos...   154   5e-36
AB022013_1(AB022013|pid:none) Antheraea pernyi mRNA for protein ...   151   5e-35
BC063355_1(BC063355|pid:none) Xenopus tropicalis thioredoxin dom...   148   4e-34
protein update 2009. 5.27
PSORT 

 psg: 0.99  gvh: 0.74  alm: 0.47  top: 0.20  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: extracellular, including cell wall
	 16.0 %: cytoplasmic
	 12.0 %: vacuolar
	  8.0 %: endoplasmic reticulum
	  4.0 %: mitochondrial
	  4.0 %: nuclear

>> prediction for SFJ770 is exc
5' end seq. ID SFJ770F
5' end seq. 
>SFJ770F.Seq
CTAAATCGATTGATATACCGAAAGTAACAGAAGATTATCTGTCAGTTTGTTATATAATGA
CATTATTGCTAGTAGGTCTTCTGATATCATTTGTTATTTGTTTTAGCTTTGTTTGCTAAT
ATTGCTTTTTCATGTGAAGGTCACCCAGAACATGATCATGGTGATGGTGATCATGAACAT
GATCATGATGAATCATTTGTTAAAATCTTAGATTCTGATAATTTCCATAATTCAGTTTCT
GAACATGACGTAACTCTTGTTATGTTTTATGCCCCATGGTGCGGTCATTGTAAAACTTTA
AAACCATTATATGAAGAAGCTGCTAAACAATTATCAGCCAACAAAAAGATTGCAATTGCA
AAAGTTGATTGTACTCAACATGAACAACTCTGTAAACAAAATAAAGTTCAAGGTTATCCA
ACTTTAGTTGTTTTCAAGAATGGTAAAGCTGAACCATATGAAGGTGATAGAACCACTAAA
TCAATTGTTCAAACTTTAGAAGAAGAATTAAAACCAACTATTTCAACTTTAGAATCAAAT
GAAGATATTGAAGAATTTAAAAAACAACACCCAA----------
Length of 5' end seq. 574
3' end seq. ID SFJ770Z
3' end seq. 
>SFJ770Z.Seq
----------AGTTGTTCCAGCCATCTCTGTTGATTCAGTTGCCAATAAAGCTCGTTACA
ATTTCGATGAAAAAGAAACCTTCTCATTCGATACCGTCTCCAAATGGATCCAAGATGTCA
TTGGTGGTAAAGTTTCTCCATTTGTTAAATCTCAACCAGAACCAGAATCAAATGATGCTC
CAGTTAAGATTGCCGTTGGTACCACTTTCAAAAAGTTGGTTTTAGACTCACCAAAGGATG
TTTTGGTTGAATTCTACGCTCCATGGTGCGGTCATTGCAAGAATCTTGCTCCAATCTACG
ATAAATTAGGTGAATACTTAAAAGACGTTGAATCTGTCTCAATCGTAAAGATTGATGCCG
ACTCAAATGATGTACCAAGTGATATCGAAATTAGAGGTTACCCAACCATCATGCTCTTCA
AAGCTGATGACAAAGAAAATCCAATCTCTTATGAAGGTCAAAGAAATGATCATATGAACT
TTGTTGAATTCATTCAAGATAACGCTGCCATTGAATTCAAATTACCATCATCTCAAACTG
ATGATAATGTNAATCTAAAAAAGATTCTTCTGCTAAACA
Length of 3' end seq. 569
Connected seq. ID SFJ770P
Connected seq. 
>SFJ770P.Seq
CTAAATCGATTGATATACCGAAAGTAACAGAAGATTATCTGTCAGTTTGTTATATAATGA
CATTATTGCTAGTAGGTCTTCTGATATCATTTGTTATTTGTTTTAGCTTTGTTTGCTAAT
ATTGCTTTTTCATGTGAAGGTCACCCAGAACATGATCATGGTGATGGTGATCATGAACAT
GATCATGATGAATCATTTGTTAAAATCTTAGATTCTGATAATTTCCATAATTCAGTTTCT
GAACATGACGTAACTCTTGTTATGTTTTATGCCCCATGGTGCGGTCATTGTAAAACTTTA
AAACCATTATATGAAGAAGCTGCTAAACAATTATCAGCCAACAAAAAGATTGCAATTGCA
AAAGTTGATTGTACTCAACATGAACAACTCTGTAAACAAAATAAAGTTCAAGGTTATCCA
ACTTTAGTTGTTTTCAAGAATGGTAAAGCTGAACCATATGAAGGTGATAGAACCACTAAA
TCAATTGTTCAAACTTTAGAAGAAGAATTAAAACCAACTATTTCAACTTTAGAATCAAAT
GAAGATATTGAAGAATTTAAAAAACAACACCCAA----------AGTTGTTCCAGCCATC
TCTGTTGATTCAGTTGCCAATAAAGCTCGTTACAATTTCGATGAAAAAGAAACCTTCTCA
TTCGATACCGTCTCCAAATGGATCCAAGATGTCATTGGTGGTAAAGTTTCTCCATTTGTT
AAATCTCAACCAGAACCAGAATCAAATGATGCTCCAGTTAAGATTGCCGTTGGTACCACT
TTCAAAAAGTTGGTTTTAGACTCACCAAAGGATGTTTTGGTTGAATTCTACGCTCCATGG
TGCGGTCATTGCAAGAATCTTGCTCCAATCTACGATAAATTAGGTGAATACTTAAAAGAC
GTTGAATCTGTCTCAATCGTAAAGATTGATGCCGACTCAAATGATGTACCAAGTGATATC
GAAATTAGAGGTTACCCAACCATCATGCTCTTCAAAGCTGATGACAAAGAAAATCCAATC
TCTTATGAAGGTCAAAGAAATGATCATATGAACTTTGTTGAATTCATTCAAGATAACGCT
GCCATTGAATTCAAATTACCATCATCTCAAACTGATGATAATGTNAATCTAAAAAAGATT
CTTCTGCTAAACA
Length of connected seq. 1143
Full length Seq ID -
Full length Seq. -
Length of full length seq. -