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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFJ736
Library SF
(Link to library)
Clone ID SFJ736
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13443-1
Original site URL
Representative seq. ID SFJ736P
(Link to Original site)
Representative DNA sequence 
>SFJ736 (SFJ736Q) /CSM/SF/SFJ7-B/SFJ736Q.Seq.d/
ATATTTTTTTTAACACACACTTTTTTATACATATAATATAGTTTTTAGTTTTTATAATTT
GTTTTTTTTTTTTATAATAATTAAATAGNGTAAAAAAAAAAGXXXXXXXXXXCCCACCAC
CACCACCTCCACCACCACCTTCTAGTGGTCCACCACCTCCACCACCACCAATGGCCAGTG
CTCCTCCATCATCAGGAGGTGGTGGTGCCAGCGGCGGTGGAAGAAATGATCTTTTGGCTT
CCATTCGTAGTGGTGCAAGTCTTAAGGCTGTTGATAAAACCAATCCACTCCCAGATATTC
AAAGTCTTGGTAATGAAGGTTCACGTTCTTTAGCTGATACTTTAGCTGCAGCTATGGCTA
ATCGTAGAGGTGGTATGAGAGAAGATGATGAAGAAGATGATGATGAC
sequence update 2001. 6. 1
Translated Amino Acid sequence 
iffnthffihii*flvfiicfffl**LNXVKKK---

---PPPPPPPPPSSGPPPPPPPMASAPPSSGGGGASGGGRNDLLASIRSGASLKAVDKTN
PLPDIQSLGNEGSRSLADTLAAAMANRRGGMREDDEEDDDD
Translated Amino Acid sequence (All Frames) 
Frame A:
ifflthtflyi*ysf*fl*fvfffynn*ix*kkk---

---pttttstttf*wsttstttngqcssiirrwwcqrrwkk*sfgfhs*wcks*gc**nq
stprysksw**rftffs*yfscsyg*s*rwyerr**rr***

Frame B:
yff*htlfytynivfsfynlffffiiik*xkkk---

---PPPPPPPPPSSGPPPPPPPMASAPPSSGGGGASGGGRNDLLASIRSGASLKAVDKTN
PLPDIQSLGNEGSRSLADTLAAAMANRRGGMREDDEEDDDD

Frame C:
iffnthffihii*flvfiicfffl**LNXVKKK---

---hhhhlhhhllvvhhlhhhqwpvllhhqevvvpaaveemifwlpfvvvqvlrllikpi
hsqifkvlvmkvhvl*lil*lqlwlivevv*ekmmkkmmm
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VFN644 (VFN644Q) /CSM/VF/VFN6-B/VFN644Q.Seq.d/                        470   e-132
VFD730 (VFD730Q) /CSM/VF/VFD7-B/VFD730Q.Seq.d/                        470   e-132
VFA863 (VFA863Q) /CSM/VF/VFA8-C/VFA863Q.Seq.d/                        470   e-132
SSG705 (SSG705Q) /CSM/SS/SSG7-A/SSG705Q.Seq.d/                        470   e-132
SLH341 (SLH341Q) /CSM/SL/SLH3-B/SLH341Q.Seq.d/                        470   e-132
SLH135 (SLH135Q) /CSM/SL/SLH1-B/SLH135Q.Seq.d/                        470   e-132
SHE721 (SHE721Q) /CSM/SH/SHE7-A/SHE721Q.Seq.d/                        470   e-132
SFK712 (SFK712Q) /CSM/SF/SFK7-A/SFK712Q.Seq.d/                        470   e-132
SFJ736 (SFJ736Q) /CSM/SF/SFJ7-B/SFJ736Q.Seq.d/                        470   e-132
SFF823 (SFF823Q) /CSM/SF/SFF8-A/SFF823Q.Seq.d/                        470   e-132
own update 2002.10.11
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF305060|AF305060.1 Dictyostelium discoideum Wiscott-Aldrich syndrome protein (wasA) gene, complete cds.   470   e-129  2
BQ923485|BQ923485.1 AGENCOURT_8818264 NIH_MGC_129 Mus musculus cDNA clone IMAGE:6390578 5', mRNA sequence.    52   8e-04  2
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    54   0.002  1
AU086474|AU086474.1 Plasmodium falciparum 3D7 cDNA clone from Sugano malaria cDNA library: XPFn2603.    54   0.002  1
AF111942|AF111942.1 Dictyostelium discoideum AX4 development protein DG1106 (DG1106) gene, partial cds.    54   0.002  1
BZ390367|BZ390367.1 EINBW75TR EI_10_12_KB Entamoeba invadens genomic clone EINBW75, DNA sequence.    54   0.002  1
AQ008300|AQ008300.1 CpG0432B CpIOWAgDNA1 Cryptosporidium parvum genomic, genomic survey sequence.    54   0.002  1
AL929358|AL929358.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 4/5.    54   0.002  1
AE014827|AE014827.1 Plasmodium falciparum 3D7 chromosome 14 section 12 of 13 of the complete sequence.    54   0.002  1
AP004523|AP004523.1 Lotus japonicus genomic DNA, chromosome 1, clone:LjT03J05, TM0050.    46   0.003  5
dna update 2004. 1. 6
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF305060_1(AF305060|pid:none) Dictyostelium discoideum Wiscott-A...    81   1e-14
AC117076_18(AC117076|pid:none) Dictyostelium discoideum chromoso...    39   0.042
DQ985464_1(DQ985464|pid:none) Suberites domuncula Wiskott-Aldric...    32   6.7
protein update 2009. 1.13
PSORT 

 psg: 0.82  gvh: 0.43  alm: 0.55  top: 0.53  tms: 0.00  mit: 0.26  mip: 0.09
 nuc: 0.03  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 28.0 %: nuclear
	 20.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum

>> prediction for SFJ736 is cyt
5' end seq. ID SFJ736F
5' end seq. 
>SFJ736F.Seq
ATATTTTTTTTAACACACACTTTTTTATACATATAATATAGTTTTTAGTTTTTATAATTT
GTTTTTTTTTTTTATAATAATTAAATAGNGTAAAAAAAAAAG----------
Length of 5' end seq. 102
3' end seq. ID SFJ736Z
3' end seq. 
>SFJ736Z.Seq
----------CCCACCACCACCACCTCCACCACCACCTTCTAGTGGTCCACCACCTCCAC
CACCACCAATGGCCAGTGCTCCTCCATCATCAGGAGGTGGTGGTGCCAGCGGCGGTGGAA
GAAATGATCTTTTGGCTTCCATTCGTAGTGGTGCAAGTCTTAAGGCTGTTGATAAAACCA
ATCCACTCCCAGATATTCAAAGTCTTGGTAATGAAGGTTCACGTTCTTTAGCTGATACTT
TAGCTGCAGCTATGGCTAATCGTAGAGGTGGTATGAGAGAAGATGATGAAGAAGATGATG
ATGAC
Length of 3' end seq. 295
Connected seq. ID SFJ736P
Connected seq. 
>SFJ736P.Seq
ATATTTTTTTTAACACACACTTTTTTATACATATAATATAGTTTTTAGTTTTTATAATTT
GTTTTTTTTTTTTATAATAATTAAATAGNGTAAAAAAAAAAG----------CCCACCAC
CACCACCTCCACCACCACCTTCTAGTGGTCCACCACCTCCACCACCACCAATGGCCAGTG
CTCCTCCATCATCAGGAGGTGGTGGTGCCAGCGGCGGTGGAAGAAATGATCTTTTGGCTT
CCATTCGTAGTGGTGCAAGTCTTAAGGCTGTTGATAAAACCAATCCACTCCCAGATATTC
AAAGTCTTGGTAATGAAGGTTCACGTTCTTTAGCTGATACTTTAGCTGCAGCTATGGCTA
ATCGTAGAGGTGGTATGAGAGAAGATGATGAAGAAGATGATGATGAC
Length of connected seq. 397
Full length Seq ID -
Full length Seq. -
Length of full length seq. -