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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFJ706
Library SF
(Link to library)
Clone ID SFJ706
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16382-1
Original site URL
Representative seq. ID SFJ706P
(Link to Original site)
Representative DNA sequence 
>SFJ706 (SFJ706Q) /CSM/SF/SFJ7-A/SFJ706Q.Seq.d/
AGTTTTAATAAACAAATATTTAAATATAATACAATAATAAAATGGACGGTGAAGATGTTC
AAGCTTTAGTTATCGATAATGGTTCTGGTATGTGTAAAGCCGGTTTTGCTGGTGATGATG
CCCCACGTGCTGTTTTCCCATCAATTGTTGGTCGTCCAAGACACACTGGTGTTATGGTCG
GTATGGGTCAAAAAGACTCTTACGTAGGTGATGAAGCCCAATCAAAGAGAGGTATCTTAA
CCCTCAAATACCCAATTGAACACGGTATCGTTACCAACTGGGATGATATGGAAAAAATCT
GGCATCATACTTTCTACAATGAACTCCGTGTTGCTCCAGAAGAACACCCAGTTCTCTTAA
CCGAAGCCCCATTAAATCCAAAAGCTAACAGAGAAAAAATGACCCAAATTATGTTTGAAA
CCTTCAACACCCCAGCCATGTACGTTGCCATTCAAGCTGTCTTATCCTTATATGCCTCTG
GTCGTACCACCGGTATTGTTATGGATTCAGGTGATGGTGTTTCCCACACTGTACCAATCT
ATGAAGGTTATGCCTTACCACACGCCATCTTACGTTTAGATTTAGCTGGTCGTGATCTTA
CTGATTACATGATGAAAATCTTAACTTGAACGTGGTTACTCATTCACCACCACTGCTGAA
AGAGAAATCGTCAGAGATAXXXXXXXXXXGCCCTCGACTTTGAAGCTGAAATGCAAACTG
CTGCCTCATCATCAGCCCTCGAAAAATCATACGAATTACCAGACGGTCAAGTCGTCACCA
TCGGTAATGAACGTTTCCGTTGCCCAGAAGCCCTCTTCCAACCATCATTCTTAGGTATGG
AATCAGCTGGTATCCACGAAACCACCTATAACTCCATCATGAAATGTGATGTTGATATCC
GTAAAGATTTATACGGTAATGTCGTCTTATCTGGTGGTACAACTATGTTCCCAGGTATTG
CTGATCGTATGAACAAAGAATTAACTGCTTTAGCCCCATCAACCATGAAAATTAAAATCA
TTGCTCCACCAGAACGTAAATACTCTGTCTGGATTGGTGGATCTATCTTAGCTTCACTCT
CAACTTTCCAACAAATGTGGATCTCCAAAGAAGAATACGACGAATCAGGTCCATCAATTG
TCCACAGAAAATGTTTCTAAACAATTAAAACTAGTGATGAAAGTGCTTCTCACAAATATT
TATGTAAAATATATAATAAAATACATTTAATATTTTTAGGTTTTGTTTAGTTGTNATCTT
TATCCGACNATTTAAAATCTAAATAAT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
vlinkylniiq**ngr*rcssfsyr*wfwyv*srfcw**cptccfpincwsskthwcygr
ygskrllrr**spikerylnpqipn*tryryqlg*ygknlasyflq*tpccsrrtpssln
rspiksks*qrkndpnyv*nlqhpshvrchsscliliclwsyhrycygfr*wcfphctnl
*rlclttrhltfrfsws*sy*LHDENLNLNVVTHSPPLLKEKSSEI---

---ALDFEAEMQTAASSSALEKSYELPDGQVVTIGNERFRCPEALFQPSFLGMESAGIHE
TTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERK
YSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF*tiktsdesashkylckiynk
ihliflgfv*lxslsdxlksk*
Translated Amino Acid sequence (All Frames) 
Frame A:
sfnkqifkyntiikwtvkmfkl*lsimvlvcvkpvllvmmphvlfshqllvvqdtlvlws
vwvkktlt*vmkpnqrevs*psntqlntvslptgmiwkksgiilstmnsvllqkntqfs*
pkph*iqkltekk*pklclkpstpqpctlpfklsypymplvvppvllwiqvmvfptlyqs
mkvmpyhtpsyv*i*lvvillit**ks*lergysftttaereivrd---

---ALDFEAEMQTAASSSALEKSYELPDGQVVTIGNERFRCPEALFQPSFLGMESAGIHE
TTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERK
YSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF*tiktsdesashkylckiynk
ihliflgfv*lxslsdxlksk*

Frame B:
vlinkylniiq**ngr*rcssfsyr*wfwyv*srfcw**cptccfpincwsskthwcygr
ygskrllrr**spikerylnpqipn*tryryqlg*ygknlasyflq*tpccsrrtpssln
rspiksks*qrkndpnyv*nlqhpshvrchsscliliclwsyhrycygfr*wcfphctnl
*rlclttrhltfrfsws*sy*LHDENLNLNVVTHSPPLLKEKSSEI---

---pstlklkckllphhqpsknhtnyqtvksspsvmnvsvaqkpssnhhs*vwnqlvstk
ppitps*nvmlisvkiytvmssylvvqlcsqvlliv*tkn*ll*phqp*klksllhqnvn
tlsglvdls*lhsqlsnkcgspkknttnqvhqlstenvskqlklvmkvlltniyvkyiik
yi*yf*vlfscxlypti*nlnn

Frame C:
f**tni*i*ynnkmdgedvqalvidngsgmckagfagddapravfpsivgrprhtgvmvg
mgqkdsyvgdeaqskrgiltlkypiehgivtnwddmekiwhhtfynelrvapeehpvllt
eaplnpkanrekmtqimfetfntpamyvaiqavlslyasgrttgivmdsgdgvshtvpiy
egyalphailrldlagrdltdymmkilt*twllihhhc*krnrqr---

---prl*s*nanccliisprkiiritrrssrhhr**tfplprsplptiilrygiswyprn
hl*lhhem*c*yp*rfir*crliwwynyvpryc*syeqrincfspinhen*nhcstrt*i
lcldwwiylsftlnfptnvdlqrrirrirsincpqkmflnn*n***kcfsqifm*ni**n
tfnifrfclvvifirxfki*i
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFJ706 (SFJ706Q) /CSM/SF/SFJ7-A/SFJ706Q.Seq.d/                       2480   0.0
VFC745 (VFC745Q) /CSM/VF/VFC7-B/VFC745Q.Seq.d/                       1330   0.0
CFC667 (CFC667Q) /CSM/CF/CFC6-C/CFC667Q.Seq.d/                       1330   0.0
AFO415 (AFO415Q) /CSM/AF/AFO4-A/AFO415Q.Seq.d/                       1330   0.0
AHF356 (AHF356Q) /CSM/AH/AHF3-C/AHF356Q.Seq.d/                       1316   0.0
VFI541 (VFI541Q) /CSM/VF/VFI5-B/VFI541Q.Seq.d/                       1306   0.0
VFF617 (VFF617Q) /CSM/VF/VFF6-A/VFF617Q.Seq.d/                       1306   0.0
SFG794 (SFG794Q) /CSM/SF/SFG7-D/SFG794Q.Seq.d/                       1306   0.0
VFM627 (VFM627Q) /CSM/VF/VFM6-B/VFM627Q.Seq.d/                       1298   0.0
VFM609 (VFM609Q) /CSM/VF/VFM6-A/VFM609Q.Seq.d/                       1275   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.  1241   0.0    5
X03281|X03281.1 Dictyostelium discoideum gene for actin A8.      1057   0.0    3
M14146|M14146.1 D.discoideum actin 15 gene, complete cds.        1039   0.0    4
AC115579|AC115579.2 Dictyostelium discoideum chromosome 2 map 4915084-5005461 strain AX4, complete sequence.  1039   0.0    4
U25660|U25660.1 Dictyostelium discoideum actin gene, partial cds.  1023   0.0    3
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.   971   0.0    14
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.   902   0.0    10
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.   898   0.0    13
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.   848   0.0    3
X03282|X03282.1 dictyostelium discoideum gene for actin A12.      835   0.0    3
dna update 2004. 1. 6
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54H30) RecName: Full=Major actin; AltName: Full=Actin-1; AltNa...   698   0.0
(Q553U6) RecName: Full=Putative actin-22;  &AC116305_3(AC116305|...   694   0.0
ATDO(A93223;A92871;S67999;A03004)actin - slime mold (Dictyosteli...   692   0.0
B23412(B23412)actin 12 - slime mold (Dictyostelium discoideum)        692   0.0
(P02576) RecName: Full=Actin, plasmodial isoform;  &ATFY(A29044;...   691   0.0
X03282_1(X03282|pid:none) dictyostelium discoideum gene for acti...   691   0.0
(P07829) RecName: Full=Actin-3; AltName: Full=Actin-3-sub 1;          681   0.0
AY294154_1(AY294154|pid:none) Thecamoeba similis actin mRNA, com...   679   0.0
(P02578) RecName: Full=Actin-1;  &ATAX(A92886;A03004) &V00002_1(...   678   0.0
AF082863_1(AF082863|pid:none) Dreissena polymorpha cytoplasmic a...   672   0.0
protein update 2009. 5.27
PSORT 

 psg: 0.75  gvh: 0.38  alm: 0.46  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 32.0 %: nuclear
	 24.0 %: cytoskeletal
	  8.0 %: mitochondrial

>> prediction for SFJ706 is cyt
5' end seq. ID SFJ706F
5' end seq. 
>SFJ706F.Seq
AGTTTTAATAAACAAATATTTAAATATAATACAATAATAAAATGGACGGTGAAGATGTTC
AAGCTTTAGTTATCGATAATGGTTCTGGTATGTGTAAAGCCGGTTTTGCTGGTGATGATG
CCCCACGTGCTGTTTTCCCATCAATTGTTGGTCGTCCAAGACACACTGGTGTTATGGTCG
GTATGGGTCAAAAAGACTCTTACGTAGGTGATGAAGCCCAATCAAAGAGAGGTATCTTAA
CCCTCAAATACCCAATTGAACACGGTATCGTTACCAACTGGGATGATATGGAAAAAATCT
GGCATCATACTTTCTACAATGAACTCCGTGTTGCTCCAGAAGAACACCCAGTTCTCTTAA
CCGAAGCCCCATTAAATCCAAAAGCTAACAGAGAAAAAATGACCCAAATTATGTTTGAAA
CCTTCAACACCCCAGCCATGTACGTTGCCATTCAAGCTGTCTTATCCTTATATGCCTCTG
GTCGTACCACCGGTATTGTTATGGATTCAGGTGATGGTGTTTCCCACACTGTACCAATCT
ATGAAGGTTATGCCTTACCACACGCCATCTTACGTTTAGATTTAGCTGGTCGTGATCTTA
CTGATTACATGATGAAAATCTTAACTTGAACGTGGTTACTCATTCACCACCACTGCTGAA
AGAGAAATCGTCAGAGATA----------
Length of 5' end seq. 679
3' end seq. ID SFJ706Z
3' end seq. 
>SFJ706Z.Seq
----------GCCCTCGACTTTGAAGCTGAAATGCAAACTGCTGCCTCATCATCAGCCCT
CGAAAAATCATACGAATTACCAGACGGTCAAGTCGTCACCATCGGTAATGAACGTTTCCG
TTGCCCAGAAGCCCTCTTCCAACCATCATTCTTAGGTATGGAATCAGCTGGTATCCACGA
AACCACCTATAACTCCATCATGAAATGTGATGTTGATATCCGTAAAGATTTATACGGTAA
TGTCGTCTTATCTGGTGGTACAACTATGTTCCCAGGTATTGCTGATCGTATGAACAAAGA
ATTAACTGCTTTAGCCCCATCAACCATGAAAATTAAAATCATTGCTCCACCAGAACGTAA
ATACTCTGTCTGGATTGGTGGATCTATCTTAGCTTCACTCTCAACTTTCCAACAAATGTG
GATCTCCAAAGAAGAATACGACGAATCAGGTCCATCAATTGTCCACAGAAAATGTTTCTA
AACAATTAAAACTAGTGATGAAAGTGCTTCTCACAAATATTTATGTAAAATATATAATAA
AATACATTTAATATTTTTAGGTTTTGTTTAGTTGTNATCTTTATCCGACNATTTAAAATC
TAAATAAT
Length of 3' end seq. 598
Connected seq. ID SFJ706P
Connected seq. 
>SFJ706P.Seq
AGTTTTAATAAACAAATATTTAAATATAATACAATAATAAAATGGACGGTGAAGATGTTC
AAGCTTTAGTTATCGATAATGGTTCTGGTATGTGTAAAGCCGGTTTTGCTGGTGATGATG
CCCCACGTGCTGTTTTCCCATCAATTGTTGGTCGTCCAAGACACACTGGTGTTATGGTCG
GTATGGGTCAAAAAGACTCTTACGTAGGTGATGAAGCCCAATCAAAGAGAGGTATCTTAA
CCCTCAAATACCCAATTGAACACGGTATCGTTACCAACTGGGATGATATGGAAAAAATCT
GGCATCATACTTTCTACAATGAACTCCGTGTTGCTCCAGAAGAACACCCAGTTCTCTTAA
CCGAAGCCCCATTAAATCCAAAAGCTAACAGAGAAAAAATGACCCAAATTATGTTTGAAA
CCTTCAACACCCCAGCCATGTACGTTGCCATTCAAGCTGTCTTATCCTTATATGCCTCTG
GTCGTACCACCGGTATTGTTATGGATTCAGGTGATGGTGTTTCCCACACTGTACCAATCT
ATGAAGGTTATGCCTTACCACACGCCATCTTACGTTTAGATTTAGCTGGTCGTGATCTTA
CTGATTACATGATGAAAATCTTAACTTGAACGTGGTTACTCATTCACCACCACTGCTGAA
AGAGAAATCGTCAGAGATA----------GCCCTCGACTTTGAAGCTGAAATGCAAACTG
CTGCCTCATCATCAGCCCTCGAAAAATCATACGAATTACCAGACGGTCAAGTCGTCACCA
TCGGTAATGAACGTTTCCGTTGCCCAGAAGCCCTCTTCCAACCATCATTCTTAGGTATGG
AATCAGCTGGTATCCACGAAACCACCTATAACTCCATCATGAAATGTGATGTTGATATCC
GTAAAGATTTATACGGTAATGTCGTCTTATCTGGTGGTACAACTATGTTCCCAGGTATTG
CTGATCGTATGAACAAAGAATTAACTGCTTTAGCCCCATCAACCATGAAAATTAAAATCA
TTGCTCCACCAGAACGTAAATACTCTGTCTGGATTGGTGGATCTATCTTAGCTTCACTCT
CAACTTTCCAACAAATGTGGATCTCCAAAGAAGAATACGACGAATCAGGTCCATCAATTG
TCCACAGAAAATGTTTCTAAACAATTAAAACTAGTGATGAAAGTGCTTCTCACAAATATT
TATGTAAAATATATAATAAAATACATTTAATATTTTTAGGTTTTGTTTAGTTGTNATCTT
TATCCGACNATTTAAAATCTAAATAAT
Length of connected seq. 1277
Full length Seq ID -
Full length Seq. -
Length of full length seq. -