NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFJ704
Library SF
(Link to library)
Clone ID SFJ704
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16358-1
Original site URL
Representative seq. ID SFJ704P
(Link to Original site)
Representative DNA sequence 
>SFJ704 (SFJ704Q) /CSM/SF/SFJ7-A/SFJ704Q.Seq.d/
AAAAAAACATTTTCTAATAAAACAGATAAATTAAAAAATGACTACCTTTAACGAATATCC
ATTCTTGGCTGAATTAGGCATTAAAGCTGAAAATAATGATGGAGTCTTCAATGGAAAATG
GGGAGGTGCTGGTGAAATCATCAAATGTTTAAATCCAACAAATAATAAAGTTATTGCAAC
TGTTAGAGGTGCTGCACCAGAAGAATATGAAACATGTATTCAAGCAATGTTAGCAGCAAA
AGTAAAATGGGCATTAACACCAGCTCCAAGAAGAGGTGAAATTGTTAGATTAATTGGTCA
AGCCATGAGAGAAAAAATTGAACCATTATCAAAATTAATTTCATTAGAAATGGGTAAAAT
TTACATTGAAGCTAAAGGTGAAGTACAAGAATTCATTGACGTATGCGATTATGCAACTGG
TTTAAGTAGATCAATCAATGGTCAAGTGATGCCATCTGAACGTCCAAATCACATTTTAAT
GGAAACCTGGAATCCATTAGGTTTAGTTGGTATCATTACTGCTTTCAATTTCCCATGTGC
CGTACTTGGTTGGAATGCTGCAATCTCAATGATTTGCGGTAACGTCCAATTATGGXXXXX
XXXXXTGGTGGAAACTTTGTTNAACCAACCGTCGTTGCCATTGAACATGATGCTCCAATN
GTAAANACTGAACTNTTTGTTCCAATTNTNTACATAATGAAATTCAAAAATNTTGACGAT
GCTTTTGCCTGGAATAATGAAGTCCCNCAAGGTNTNTCATNTTCCCTNTTCACAAACAAT
CAAAANAATTATCTTCAAATGGCTTGGACCNACCGGATCTGACTGTGGNATAGTTAACGT
AAATGNAGCTACNAACGGTGCTGAAATTGGTGGNGCCNTTGGAGGTGAAAAAAAGACCGG
AGGTGGTAAANAATCTGGCTCAGACAGCTGGAAACAGTATTGCCGTCGTAGNACTAANAC
NATCAAC
sequence update 2001. 6. 1
Translated Amino Acid sequence 
kkhflikqin*KMTTFNEYPFLAELGIKAENNDGVFNGKWGGAGEIIKCLNPTNNKVIAT
VRGAAPEEYETCIQAMLAAKVKWALTPAPRRGEIVRLIGQAMREKIEPLSKLISLEMGKI
YIEAKGEVQEFIDVCDYATGLSRSINGQVMPSERPNHILMETWNPLGLVGIITAFNFPCA
VLGWNAAISMICGNVQLW---

---GGNFVXPTVVAIEHDAPXVXTELFVPIXYIMKFKNXDDAFAWNNEVPQGXSXSLFTN
NQXNYLQMAWTXRI*lwxs*rkxsyxrc*nwwxxwr*kkdrrw*xiwlrqletvlps*x*
xxq
Translated Amino Acid sequence (All Frames) 
Frame A:
kktfsnktdklkndyl*risilg*irh*s*k**wslqwkmgrcw*nhqmfksnk**sycn
c*rcctrri*nmyssnvsskskmgintsskkr*nc*inwssherkn*tiikinfirng*n
lh*s*r*strih*rmrlcnwfk*inqwssdai*tskshfngnlesirfswyhycfqfpmc
rtwleccnlndlr*rpim---

---wwklcxtnrrch*t*csnxkx*txcsnxxhneiqkx*rcfcle**spxrxxxfpxhk
qskxlssngldxpdltvx*lt*mxlxtvlklvxplevkkrpevvxnlaqtagnsiavvxl
xxs

Frame B:
kkhflikqin*KMTTFNEYPFLAELGIKAENNDGVFNGKWGGAGEIIKCLNPTNNKVIAT
VRGAAPEEYETCIQAMLAAKVKWALTPAPRRGEIVRLIGQAMREKIEPLSKLISLEMGKI
YIEAKGEVQEFIDVCDYATGLSRSINGQVMPSERPNHILMETWNPLGLVGIITAFNFPCA
VLGWNAAISMICGNVQLW---

---GGNFVXPTVVAIEHDAPXVXTELFVPIXYIMKFKNXDDAFAWNNEVPQGXSXSLFTN
NQXNYLQMAWTXRI*lwxs*rkxsyxrc*nwwxxwr*kkdrrw*xiwlrqletvlps*x*
xxq

Frame C:
knif**nr*ikk*lpltnihswln*alklkimmessmengevlvkssnv*iqqiikllql
levlhqknmkhvfkqc*qqk*ngh*hqlqeevklld*lvkp*ekklnhyqn*fh*kwvkf
tlklkvkyknsltyaimqlv*vdqsmvk*chlnvqitf*wkpgih*v*lvslllsishvp
ylvgmlqsq*favtsny---

---vetlxnqpslplnmmlqx*xlnxlfqxxt**nskxltmllpgimksxkvxhxpxsqt
ikxiifkwlgptgsdcgivnvnxatngaeiggaxggekktgggkxsgsdswkqycrrxtx
tin
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFJ704 (SFJ704Q) /CSM/SF/SFJ7-A/SFJ704Q.Seq.d/                       1665   0.0
VFL522 (VFL522Q) /CSM/VF/VFL5-A/VFL522Q.Seq.d/                       1166   0.0
VFK658 (VFK658Q) /CSM/VF/VFK6-C/VFK658Q.Seq.d/                       1166   0.0
VFB844 (VFB844Q) /CSM/VF/VFB8-B/VFB844Q.Seq.d/                       1166   0.0
SFK705 (SFK705Q) /CSM/SF/SFK7-A/SFK705Q.Seq.d/                       1166   0.0
SFJ264 (SFJ264Q) /CSM/SF/SFJ2-C/SFJ264Q.Seq.d/                       1166   0.0
SFI562 (SFI562Q) /CSM/SF/SFI5-C/SFI562Q.Seq.d/                       1166   0.0
SFH477 (SFH477Q) /CSM/SF/SFH4-D/SFH477Q.Seq.d/                       1166   0.0
SFF818 (SFF818Q) /CSM/SF/SFF8-A/SFF818Q.Seq.d/                       1166   0.0
SFF292 (SFF292Q) /CSM/SF/SFF2-D/SFF292Q.Seq.d/                       1166   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.   803   0.0    8
BU042811|BU042811.1 PP_LEa0014A23f Peach developing fruit mesocarp Prunus persica cDNA clone PP_LEa0014A23f, mRNA sequence.    74   6e-12  2
D88434|D88434.1 Malus domestica mRNA for protein abundantly expressed during apple fruit development, complete cds.    72   1e-08  2
AY034889|AY034889.1 Tortula ruralis aldehyde dehydrogenase ALDH2 (RNP129b) mRNA, complete cds.    46   4e-06  2
BJ550374|BJ550374.1 Hordeum vulgare subsp. spontaneum strain H602 cDNA clone:bah41j06, 5' mRNA sequence.    44   6e-06  4
BF200236|BF200236.1 WHE2254_E08_J16ZE Triticum monococcum vegetative apex cDNA library Triticum monococcum cDNA clone WHE2254_E08_J16, mRNA sequence.    52   1e-05  3
AJ615957|AJ615957.1 Triticum turgidum EST, clone 12415R.           52   3e-05  3
BQ806838|BQ806838.1 WHE3583_G06_M11ZS Wheat developing grains cDNA library Triticum aestivum cDNA clone WHE3583_G06_M11, mRNA sequence.    44   3e-05  4
AJ614830|AJ614830.1 Triticum turgidum EST, clone 10801R.           52   4e-05  3
CB209980|CB209980.1 OML00260 Oryza minuta HybriZAP-2.1 XR library Oryza minuta cDNA 5', mRNA sequence.    50   5e-05  2
dna update 2004. 1. 6
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P83401) RecName: Full=Putative aldehyde dehydrogenase family 7 ...   382   e-105
BC044367_1(BC044367|pid:none) Danio rerio aldehyde dehydrogenase...   238   3e-61
EF678715_1(EF678715|pid:none) Picea sitchensis clone WS0295_M17 ...   234   3e-60
BT044648_1(BT044648|pid:none) Salmo salar clone ssal-rgf-001-326...   233   5e-60
AF323586_1(AF323586|pid:none) Oryza sativa aldehyde dehydrogenas...   228   2e-58
AY847462_1(AY847462|pid:none) Acanthopagrus schlegelii antiquiti...   228   3e-58
AY883858_1(AY883858|pid:none) Sterkiella histriomuscorum turgor ...   227   5e-58
AK297365_1(AK297365|pid:none) Homo sapiens cDNA FLJ56008 complet...   226   9e-58
(P49419) RecName: Full=Alpha-aminoadipic semialdehyde dehydrogen...   226   9e-58
BT067707_1(BT067707|pid:none) Zea mays full-length cDNA clone ZM...   224   3e-57
protein update 2009. 5.27
PSORT 

 psg: 0.78  gvh: 0.31  alm: 0.29  top: 0.40  tms: 0.07  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: nuclear
	 24.0 %: endoplasmic reticulum
	 20.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: plasma membrane
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for SFJ704 is nuc
5' end seq. ID SFJ704F
5' end seq. 
>SFJ704F.Seq
AAAAAAACATTTTCTAATAAAACAGATAAATTAAAAAATGACTACCTTTAACGAATATCC
ATTCTTGGCTGAATTAGGCATTAAAGCTGAAAATAATGATGGAGTCTTCAATGGAAAATG
GGGAGGTGCTGGTGAAATCATCAAATGTTTAAATCCAACAAATAATAAAGTTATTGCAAC
TGTTAGAGGTGCTGCACCAGAAGAATATGAAACATGTATTCAAGCAATGTTAGCAGCAAA
AGTAAAATGGGCATTAACACCAGCTCCAAGAAGAGGTGAAATTGTTAGATTAATTGGTCA
AGCCATGAGAGAAAAAATTGAACCATTATCAAAATTAATTTCATTAGAAATGGGTAAAAT
TTACATTGAAGCTAAAGGTGAAGTACAAGAATTCATTGACGTATGCGATTATGCAACTGG
TTTAAGTAGATCAATCAATGGTCAAGTGATGCCATCTGAACGTCCAAATCACATTTTAAT
GGAAACCTGGAATCCATTAGGTTTAGTTGGTATCATTACTGCTTTCAATTTCCCATGTGC
CGTACTTGGTTGGAATGCTGCAATCTCAATGATTTGCGGTAACGTCCAATTATGG-----
-----
Length of 5' end seq. 595
3' end seq. ID SFJ704Z
3' end seq. 
>SFJ704Z.Seq
----------TGGTGGAAACTTTGTTNAACCAACCGTCGTTGCCATTGAACATGATGCTC
CAATNGTAAANACTGAACTNTTTGTTCCAATTNTNTACATAATGAAATTCAAAAATNTTG
ACGATGCTTTTGCCTGGAATAATGAAGTCCCNCAAGGTNTNTCATNTTCCCTNTTCACAA
ACAATCAAAANAATTATCTTCAAATGGCTTGGACCNACCGGATCTGACTGTGGNATAGTT
AACGTAAATGNAGCTACNAACGGTGCTGAAATTGGTGGNGCCNTTGGAGGTGAAAAAAAG
ACCGGAGGTGGTAAANAATCTGGCTCAGACAGCTGGAAACAGTATTGCCGTCGTAGNACT
AANACNATCAAC
Length of 3' end seq. 362
Connected seq. ID SFJ704P
Connected seq. 
>SFJ704P.Seq
AAAAAAACATTTTCTAATAAAACAGATAAATTAAAAAATGACTACCTTTAACGAATATCC
ATTCTTGGCTGAATTAGGCATTAAAGCTGAAAATAATGATGGAGTCTTCAATGGAAAATG
GGGAGGTGCTGGTGAAATCATCAAATGTTTAAATCCAACAAATAATAAAGTTATTGCAAC
TGTTAGAGGTGCTGCACCAGAAGAATATGAAACATGTATTCAAGCAATGTTAGCAGCAAA
AGTAAAATGGGCATTAACACCAGCTCCAAGAAGAGGTGAAATTGTTAGATTAATTGGTCA
AGCCATGAGAGAAAAAATTGAACCATTATCAAAATTAATTTCATTAGAAATGGGTAAAAT
TTACATTGAAGCTAAAGGTGAAGTACAAGAATTCATTGACGTATGCGATTATGCAACTGG
TTTAAGTAGATCAATCAATGGTCAAGTGATGCCATCTGAACGTCCAAATCACATTTTAAT
GGAAACCTGGAATCCATTAGGTTTAGTTGGTATCATTACTGCTTTCAATTTCCCATGTGC
CGTACTTGGTTGGAATGCTGCAATCTCAATGATTTGCGGTAACGTCCAATTATGG-----
-----TGGTGGAAACTTTGTTNAACCAACCGTCGTTGCCATTGAACATGATGCTCCAATN
GTAAANACTGAACTNTTTGTTCCAATTNTNTACATAATGAAATTCAAAAATNTTGACGAT
GCTTTTGCCTGGAATAATGAAGTCCCNCAAGGTNTNTCATNTTCCCTNTTCACAAACAAT
CAAAANAATTATCTTCAAATGGCTTGGACCNACCGGATCTGACTGTGGNATAGTTAACGT
AAATGNAGCTACNAACGGTGCTGAAATTGGTGGNGCCNTTGGAGGTGAAAAAAAGACCGG
AGGTGGTAAANAATCTGGCTCAGACAGCTGGAAACAGTATTGCCGTCGTAGNACTAANAC
NATCAAC
Length of connected seq. 957
Full length Seq ID -
Full length Seq. -
Length of full length seq. -