SFJ685
Library SF
(Link to library)
Clone ID SFJ685
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16463-1
Original site URL
Representative seq. ID SFJ685P
(Link to Original site)
Representative DNA sequence
>SFJ685 (SFJ685Q) /CSM/SF/SFJ6-D/SFJ685Q.Seq.d/
ATATATTTTATTTGGGAAAAATAAATAAATAAATAAATAAATATGTCAGCTCCAGTTTTA
ACCACCAGTAGTGGTTCACCAATTGATAACAATTTAAACTCAATGACCGCAGGTGTTAAT
GGTCCAATTTTAATTCAAGATTTCACTTTAATTGATAAACTTGCTCATTTCGATCGTGAA
CGTATCCCAGAACGTGTTGTACATGCTAAAGGTGCTGGTGCCCATGGTTATTTCGAAGTT
ACCTCAAGTGATGTACCAAAATGGTGTAAAGCTAAATTCTTAAATAAAGTTGGTAAGAGA
ACACCAATCTTCACCCGTTTCTCTACTGTTGGTGGTGAAAAAGGTTCATCCGATTCTGAA
AGAGATCCAAGAGGTTTCGCTGTCAAATTTTATACTGAAGAAGGTAACTTTGATATGGTC
GGTAATAATACTCCAGTTTTCTTTATTCGTGATCCATCAAAATTCCCAGATTTCATTCAT
ACACAAAAACGTAATCCACAAACAAATTGTAAAGATCCAAATATGTTTTGGGATTTTTTA
GGTCAAACACCAGAATCAACACATCAAGTATCAATTTTATTCTCTGATAGAGGTACACCA
AAATCATATCGTCATATGCATGGTTTCTCATCACATACCTTAXXXXXXXXXXAAGTTTCC
ATTCAATTGATGGAATTTGAAGATGCCTTAAAGTATCGTTTCAATCCATTCGATGTAACA
AAGATTTGGTCACACAAAGACTATCCATTAATTCAAATTGGTCGTATGGTTTTGAATCGT
AATCCAGAGAATTACTTTGCTGAAGTTGAACAAGCTGCCTTCTCACCATCCCACATGGTT
CCAGGTATTGAACCATCACCAGATAAGATGTTACAAGGTCGTCTCTTCTCTTATCCAGAT
ACTCATCGTCATCGTTTAGGTGTAAACTATCAACAAATCCCAGTCAATTGTCCATTCGCC
GTAAAGGGTGGTGTTAAAAACTACCAACGTGATGGTTTCATGGCTGTCAATGGTAATGGT
GGTAAAGGTCCAAACTATCAACCAAACTCTTTCGGTGGTCCAGAGCCACATCCAGAATTT
GCTCAACATAAATTTGACGTCTCTGGTTTCGCTGCTCGTCAACCATACAATCATCCAAAT
GACGACTTTGTTCAACCAGGTGATTTATATAGACTCATGTCTGAAGATGCCAAATCTCGT
TTCGTCTCTAATTTAGTCGGTCACATGTCCGGTGTCACCATCAAAGAAATTCAAGTTCGT
GCCGTTTCAAACTTTTACAAGGCTGACAAAGATTTAGGTGCTCGTTTATGTAAGGGTCTT
GGTATTGATGTTAATGATGTCATCAAATTCGCTGCTAGATCAAACTTGTAAATCAATATA
TTAAAAATAAAAAAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence
iyfiwek*ink*INMSAPVLTTSSGSPIDNNLNSMTAGVNGPILIQDFTLIDKLAHFDRE
RIPERVVHAKGAGAHGYFEVTSSDVPKWCKAKFLNKVGKRTPIFTRFSTVGGEKGSSDSE
RDPRGFAVKFYTEEGNFDMVGNNTPVFFIRDPSKFPDFIHTQKRNPQTNCKDPNMFWDFL
GQTPESTHQVSILFSDRGTPKSYRHMHGFSSHTL---

---VSIQLMEFEDALKYRFNPFDVTKIWSHKDYPLIQIGRMVLNRNPENYFAEVEQAAFS
PSHMVPGIEPSPDKMLQGRLFSYPDTHRHRLGVNYQQIPVNCPFAVKGGVKNYQRDGFMA
VNGNGGKGPNYQPNSFGGPEPHPEFAQHKFDVSGFAARQPYNHPNDDFVQPGDLYRLMSE
DAKSRFVSNLVGHMSGVTIKEIQVRAVSNFYKADKDLGARLCKGLGIDVNDVIKFAARSN
L*inilkikk


Translated Amino Acid sequence (All Frames)
Frame A:
iyfiwek*ink*INMSAPVLTTSSGSPIDNNLNSMTAGVNGPILIQDFTLIDKLAHFDRE
RIPERVVHAKGAGAHGYFEVTSSDVPKWCKAKFLNKVGKRTPIFTRFSTVGGEKGSSDSE
RDPRGFAVKFYTEEGNFDMVGNNTPVFFIRDPSKFPDFIHTQKRNPQTNCKDPNMFWDFL
GQTPESTHQVSILFSDRGTPKSYRHMHGFSSHTL---

---kfpfn*wnlkmp*sivsihsm*qrfghtktih*fklvvwf*iviqritllklnklps
hhptwfqvlnhhqircykvvssliqiliviv*v*tinksqsivhsp*rvvlkttnvmvsw
lsmvmvvkvqtinqtlsvvqshiqnllninltslvsllvnhtiiqmttlfnqviyidscl
kmpnlvssli*svtcpvspskkfkfvpfqtftrltki*vlvyvrvlvlmlmmssnslldq
tcksiy*k*kk

Frame B:
yilfgknk*ink*icqlqf*ppvvvhqliti*tq*pqvlmvqf*fkisl*linllisivn
vsqnvlymlkvlvpmvisklpqvmyqngvklns*iklvrehqsspvslllvvkkvhpilk
eiqevslsnfilkkvtliwsviilqfslfvihqnsqisfihknvihkqivkiqicfgif*
vkhqnqhikyqfyslievhqnhivicmvshhip---

---sfhsidgi*rclkvsfqsircnkdlvtqrlsinsnwsygfes*srellc*s*tscll
tiphgsry*titr*dvtrsslllsryssssfrcklstnpsqlsirrkgwc*klpt*wfhg
cqw*ww*rsklstklfrwsratsricst*i*rlwfrcsstiqssk*rlcstr*fi*thv*
rcqisfrl*fsrshvrchhqrnssscrfkllqg*qrfrcsfm*gswy*c**chqirc*ik
lvnqyiknkk

Frame C:
ifylgkink*inkyvsssfnhq*wftn**qfklndrrc*wsnfnsrfhfn**tcsfrs*t
yprtcctc*rcwcpwlfrsylk*ctkmv*s*ilk*sw*entnlhpflycww*krfirf*k
rskrfrcqily*rr*l*ygr**yssflys*sikiprfhsytkt*stnkl*rskyvlgffr
sntrintssinfil**rytkiissyawflityl---

---VSIQLMEFEDALKYRFNPFDVTKIWSHKDYPLIQIGRMVLNRNPENYFAEVEQAAFS
PSHMVPGIEPSPDKMLQGRLFSYPDTHRHRLGVNYQQIPVNCPFAVKGGVKNYQRDGFMA
VNGNGGKGPNYQPNSFGGPEPHPEFAQHKFDVSGFAARQPYNHPNDDFVQPGDLYRLMSE
DAKSRFVSNLVGHMSGVTIKEIQVRAVSNFYKADKDLGARLCKGLGIDVNDVIKFAARSN
L*inilkikk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFJ685 (SFJ685Q) /CSM/SF/SFJ6-D/SFJ685Q.Seq.d/ 2595 0.0
FC-142 (FC-142Q) /CSM/CG/CG-FC/FC-142Q.Seq.d/ 1447 0.0
AFE580 (AFE580Q) /CSM/AF/AFE5-D/AFE580Q.Seq.d/ 1447 0.0
CFC537 (CFC537Q) /CSM/CF/CFC5-B/CFC537Q.Seq.d/ 1445 0.0
SFK640 (SFK640Q) /CSM/SF/SFK6-B/SFK640Q.Seq.d/ 1443 0.0
CFI885 (CFI885Q) /CSM/CF/CFI8-D/CFI885Q.Seq.d/ 1443 0.0
AFN369 (AFN369Q) /CSM/AF/AFN3-C/AFN369Q.Seq.d/ 1441 0.0
AFM195 (AFM195Q) /CSM/AF/AFM1-D/AFM195Q.Seq.d/ 1441 0.0
AFG841 (AFG841Q) /CSM/AF/AFG8-B/AFG841Q.Seq.d/ 1441 0.0
CFF134 (CFF134Q) /CSM/CF/CFF1-B/CFF134Q.Seq.d/ 1437 0.0

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF090443|AF090443.1 Dictyostelium discoideum catalase (cat) mRNA, complete cds. 1447 0.0 1
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, *** SEQUENCING IN PROGRESS ***, 1 ordered piece. 1447 0.0 13
AB064338|AB064338.1 Candida boidinii CTA1 gene for peroxisomal catalase, complete cds. 111 1e-64 7
E65314|E65314.1 Novel catalase, gene of said catalase and composition containing said catalase, and process for preparing catalase using the genetic engineering technology. 86 9e-33 4
AP004595|AP004595.1 Oceanobacillus iheyensis genomic DNA, section 3/13. 72 3e-32 10
AX536932|AX536932.1 Sequence 533 from Patent WO02064766. 101 7e-29 3
AR375090|AR375090.1 Sequence 96 from patent US 6605709. 76 7e-28 3
AJ400964|AJ400964.1 Proteus mirabilis ORF1 DNA, katA gene and menE gene, wild type. 76 4e-27 3
AJ400965|AJ400965.1 Proteus mirabilis ORF1 DNA, katA gene and menE gene, strain PR. 76 4e-27 3
AB006327|AB006327.1 Candida albicans mRNA for catalase, complete cds. 94 2e-26 3
dna update 2004. 1. 6
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AF090443_1(AF090443|pid:none) Dictyostelium discoideum catalase ... 748 0.0
AY378080_1(AY378080|pid:none) Tetrahymena thermophila putative c... 512 e-143
AL009126_914(AL009126|pid:none) Bacillus subtilis subsp. subtili... 482 e-134
(P26901) RecName: Full=Vegetative catalase; EC=1.11.1.6... 482 e-134
(Q2I6W4) RecName: Full=Catalase; EC=1.11.1.6; &DQ24181... 481 e-134
(P04040) RecName: Full=Catalase; EC=1.11.1.6; &AK29158... 479 e-133
(Q5RF10) RecName: Full=Catalase; EC=1.11.1.6; &CR85735... 478 e-133
AJ719360_1(AJ719360|pid:none) Gallus gallus mRNA for hypothetica... 478 e-133
AK315350_1(AK315350|pid:none) Homo sapiens cDNA, FLJ96395, highl... 477 e-133
AY242059_1(AY242059|pid:none) Melopsittacus undulatus catalase (... 475 e-132
protein update 2009. 5.27
PSORT

psg: 0.89 gvh: 0.57 alm: 0.44 top: 0.40 tms: 0.00 mit: 0.31 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

28.0 %: cytoplasmic
28.0 %: nuclear
20.0 %: extracellular, including cell wall
16.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vacuolar

>> prediction for SFJ685 is cyt

5' end seq. ID SFJ685F
5' end seq.
>SFJ685F.Seq
ATATATTTTATTTGGGAAAAATAAATAAATAAATAAATAAATATGTCAGCTCCAGTTTTA
ACCACCAGTAGTGGTTCACCAATTGATAACAATTTAAACTCAATGACCGCAGGTGTTAAT
GGTCCAATTTTAATTCAAGATTTCACTTTAATTGATAAACTTGCTCATTTCGATCGTGAA
CGTATCCCAGAACGTGTTGTACATGCTAAAGGTGCTGGTGCCCATGGTTATTTCGAAGTT
ACCTCAAGTGATGTACCAAAATGGTGTAAAGCTAAATTCTTAAATAAAGTTGGTAAGAGA
ACACCAATCTTCACCCGTTTCTCTACTGTTGGTGGTGAAAAAGGTTCATCCGATTCTGAA
AGAGATCCAAGAGGTTTCGCTGTCAAATTTTATACTGAAGAAGGTAACTTTGATATGGTC
GGTAATAATACTCCAGTTTTCTTTATTCGTGATCCATCAAAATTCCCAGATTTCATTCAT
ACACAAAAACGTAATCCACAAACAAATTGTAAAGATCCAAATATGTTTTGGGATTTTTTA
GGTCAAACACCAGAATCAACACATCAAGTATCAATTTTATTCTCTGATAGAGGTACACCA
AAATCATATCGTCATATGCATGGTTTCTCATCACATACCTTA----------
Length of 5' end seq. 642
3' end seq. ID SFJ685Z
3' end seq.
>SFJ685Z.Seq
----------AAGTTTCCATTCAATTGATGGAATTTGAAGATGCCTTAAAGTATCGTTTC
AATCCATTCGATGTAACAAAGATTTGGTCACACAAAGACTATCCATTAATTCAAATTGGT
CGTATGGTTTTGAATCGTAATCCAGAGAATTACTTTGCTGAAGTTGAACAAGCTGCCTTC
TCACCATCCCACATGGTTCCAGGTATTGAACCATCACCAGATAAGATGTTACAAGGTCGT
CTCTTCTCTTATCCAGATACTCATCGTCATCGTTTAGGTGTAAACTATCAACAAATCCCA
GTCAATTGTCCATTCGCCGTAAAGGGTGGTGTTAAAAACTACCAACGTGATGGTTTCATG
GCTGTCAATGGTAATGGTGGTAAAGGTCCAAACTATCAACCAAACTCTTTCGGTGGTCCA
GAGCCACATCCAGAATTTGCTCAACATAAATTTGACGTCTCTGGTTTCGCTGCTCGTCAA
CCATACAATCATCCAAATGACGACTTTGTTCAACCAGGTGATTTATATAGACTCATGTCT
GAAGATGCCAAATCTCGTTTCGTCTCTAATTTAGTCGGTCACATGTCCGGTGTCACCATC
AAAGAAATTCAAGTTCGTGCCGTTTCAAACTTTTACAAGGCTGACAAAGATTTAGGTGCT
CGTTTATGTAAGGGTCTTGGTATTGATGTTAATGATGTCATCAAATTCGCTGCTAGATCA
AACTTGTAAATCAATATATTAAAAATAAAAAAAA
Length of 3' end seq. 744
Connected seq. ID SFJ685P
Connected seq.
>SFJ685P.Seq
ATATATTTTATTTGGGAAAAATAAATAAATAAATAAATAAATATGTCAGCTCCAGTTTTA
ACCACCAGTAGTGGTTCACCAATTGATAACAATTTAAACTCAATGACCGCAGGTGTTAAT
GGTCCAATTTTAATTCAAGATTTCACTTTAATTGATAAACTTGCTCATTTCGATCGTGAA
CGTATCCCAGAACGTGTTGTACATGCTAAAGGTGCTGGTGCCCATGGTTATTTCGAAGTT
ACCTCAAGTGATGTACCAAAATGGTGTAAAGCTAAATTCTTAAATAAAGTTGGTAAGAGA
ACACCAATCTTCACCCGTTTCTCTACTGTTGGTGGTGAAAAAGGTTCATCCGATTCTGAA
AGAGATCCAAGAGGTTTCGCTGTCAAATTTTATACTGAAGAAGGTAACTTTGATATGGTC
GGTAATAATACTCCAGTTTTCTTTATTCGTGATCCATCAAAATTCCCAGATTTCATTCAT
ACACAAAAACGTAATCCACAAACAAATTGTAAAGATCCAAATATGTTTTGGGATTTTTTA
GGTCAAACACCAGAATCAACACATCAAGTATCAATTTTATTCTCTGATAGAGGTACACCA
AAATCATATCGTCATATGCATGGTTTCTCATCACATACCTTA----------AAGTTTCC
ATTCAATTGATGGAATTTGAAGATGCCTTAAAGTATCGTTTCAATCCATTCGATGTAACA
AAGATTTGGTCACACAAAGACTATCCATTAATTCAAATTGGTCGTATGGTTTTGAATCGT
AATCCAGAGAATTACTTTGCTGAAGTTGAACAAGCTGCCTTCTCACCATCCCACATGGTT
CCAGGTATTGAACCATCACCAGATAAGATGTTACAAGGTCGTCTCTTCTCTTATCCAGAT
ACTCATCGTCATCGTTTAGGTGTAAACTATCAACAAATCCCAGTCAATTGTCCATTCGCC
GTAAAGGGTGGTGTTAAAAACTACCAACGTGATGGTTTCATGGCTGTCAATGGTAATGGT
GGTAAAGGTCCAAACTATCAACCAAACTCTTTCGGTGGTCCAGAGCCACATCCAGAATTT
GCTCAACATAAATTTGACGTCTCTGGTTTCGCTGCTCGTCAACCATACAATCATCCAAAT
GACGACTTTGTTCAACCAGGTGATTTATATAGACTCATGTCTGAAGATGCCAAATCTCGT
TTCGTCTCTAATTTAGTCGGTCACATGTCCGGTGTCACCATCAAAGAAATTCAAGTTCGT
GCCGTTTCAAACTTTTACAAGGCTGACAAAGATTTAGGTGCTCGTTTATGTAAGGGTCTT
GGTATTGATGTTAATGATGTCATCAAATTCGCTGCTAGATCAAACTTGTAAATCAATATA
TTAAAAATAAAAAAAA
Length of connected seq. 1386
Full length Seq ID -
Full length Seq. -
Length of full length seq. -