>SFJ673 (SFJ673Q) /CSM/SF/SFJ6-D/SFJ673Q.Seq.d/
ATGTATGCAATAAACGGATTTACAGTTGAAGTCGATCAAGTTTGTGTCATTGTTTGTAGA
TTATCTAAAATGGTTCATATAGTTCCATGTCATAAGACAATAGATGCCCAACATACCGTN
CAATTATTGTTGAATCATGTGTTCAGACTCCATGGTTATCCAAGAACAATCGTCTCCGAT
AGAGATCCAAGATTCCTTTCAGAAATATGGGAGAGATGGGCAAAGACGATGGATTCTAAA
CTCAAGATGACTGTGGCACACAGAGCACAAGCTGATGGTCAAACTGAAAGAATGAATAGA
GAAATTATTAGAATATTAACTAAAGCCTCAACAGAGTATGGGGAGAATTGGTCAGATATC
ATTCCACTTATTGAATTTGCAATGAACTCATCAATGAGCAAGTCTACAAAGATGTCACCA
TTCCAAATCGTTTATGGATTCAATCCACCAACTCCCGTTAATCATTTCAATTCATTAACA
AAGACTCGTATACCAATGAGCAACATCAAAAAGATTGNCCGTGATAATATACTAGATGCT
CAAATCAATGCTCAAAAGTATTACXXXXXXXXXX

MYAINGFTVEVDQVCVIVCRLSKMVHIVPCHKTIDAQHTVQLLLNHVFRLHGYPRTIVSD
RDPRFLSEIWERWAKTMDSKLKMTVAHRAQADGQTERMNREIIRILTKASTEYGENWSDI
IPLIEFAMNSSMSKSTKMSPFQIVYGFNPPTPVNHFNSLTKTRIPMSNIKKIXRDNILDA
QINAQKY---

Frame A:
MYAINGFTVEVDQVCVIVCRLSKMVHIVPCHKTIDAQHTVQLLLNHVFRLHGYPRTIVSD
RDPRFLSEIWERWAKTMDSKLKMTVAHRAQADGQTERMNREIIRILTKASTEYGENWSDI
IPLIEFAMNSSMSKSTKMSPFQIVYGFNPPTPVNHFNSLTKTRIPMSNIKKIXRDNILDA
QINAQKY---


Frame B:
cmq*tdlqlksikfvslfvdylkwfi*fhvirq*mpnipxnyc*imcsdsmviqeqsspi
eiqdsfqkygrdgqrrwilnsr*lwhtehklmvklke*ieklley*lkpqqsmgrigqis
fhllnlq*thq*aslqrchhsksfmdsihqlpliisih*qrlvyq*atskrlxviiy*ml
ksmlksi---


Frame C:
vcnkriys*srsslchcl*ii*ngsyssms*dnrcptyrxiivescvqtpwlsknnrlr*
rskipfrnmgemgkddgf*tqddcgtqsts*wsn*kne*rny*nin*slnrvwgelvryh
sty*icnelineqvykdvtipnrlwiqstnsr*sfqfinkdsytneqhqkdxp**ytrcs
nqcskvl---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFJ673 (SFJ673Q) /CSM/SF/SFJ6-D/SFJ673Q.Seq.d/                       1106   0.0
SFJ625 (SFJ625Q) /CSM/SF/SFJ6-B/SFJ625Q.Seq.d/                       1106   0.0
AFL417 (AFL417Q) /CSM/AF/AFL4-A/AFL417Q.Seq.d/                        892   0.0
CHD524 (CHD524Q) /CSM/CH/CHD5-A/CHD524Q.Seq.d/                        666   0.0
SFC470 (SFC470Q) /CSM/SF/SFC4-C/SFC470Q.Seq.d/                        577   e-164
AFC284 (AFC284Q) /CSM/AF/AFC2-D/AFC284Q.Seq.d/                        559   e-158
AHH420 (AHH420Q) /CSM/AH/AHH4-A/AHH420Q.Seq.d/                        470   e-131
SHC842 (SHC842Q) /CSM/SH/SHC8-B/SHC842Q.Seq.d/                        438   e-122
AHA263 (AHA263Q) /CSM/AH/AHA2-C/AHA263Q.Seq.d/                        394   e-109
VFA550 (VFA550Q) /CSM/VF/VFA5-C/VFA550Q.Seq.d/                        389   e-107

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF049230|AF049230.1 Dictyostelium discoideum LTR-retrotransposon Skipper, Gag (gag) gene, complete cds; and Pro (pro) and Pol (pol) genes, partial cds.  1074   0.0    1
AF017040|AF017040.1 Dictyostelium discoideum LTR-retrotransposon Skipper, Gag (gag) mRNA, complete cds; and Pro (pro) and Pol (pol) mRNA, partial cds.  1074   0.0    1
BX005479|BX005479.5 Zebrafish DNA sequence from clone DKEY-209E8 in linkage group 3.    36   0.18   6
AC101936|AC101936.3 Mus musculus clone RP24-79M15, WORKING DRAFT SEQUENCE, 6 unordered pieces.    44   0.21   7
BZ408031|BZ408031.1 OGABE26TM ZM_0.7_1.5_KB Zea mays genomic clone ZMMBMa0021K22, DNA sequence.    38   0.24   2
BZ408023|BZ408023.1 OGABE26TC ZM_0.7_1.5_KB Zea mays genomic clone ZMMBMa0021K22, DNA sequence.    38   0.25   2
AC147497|AC147497.3 Medicago truncatula clone mth2-138p6, WORKING DRAFT SEQUENCE, 11 unordered pieces.    36   0.25   8
CG350193|CG350193.1 OG0EJ33TV ZM_0.7_1.5_KB Zea mays genomic clone ZMMBMa0699E18, genomic survey sequence.    38   0.31   2
AC026182|AC026182.4 Homo sapiens chromosome 3 clone RP11-279B12 map 3p, complete sequence.    40   0.34   5
AC116034|AC116034.3 Zea mays genomic clone ZM16H10, finished contig 37376, complete sequence.    34   0.37   4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF049230_3(AF049230|pid:none) Dictyostelium discoideum LTR-retro...   357   9e-98
AF128395_9(AF128395|pid:none) Arabidopsis thaliana BAC F5K24.  &...   130   2e-29
AM464058_1(AM464058|pid:none) Vitis vinifera contig VV78X166156....   124   2e-27
AY129008_1(AY129008|pid:none) Zea mays CRM centromeric retrotran...   124   2e-27
AY334361_3(AY334361|pid:none) Petunia x hybrida clone 3 integrat...   124   2e-27
AC105768_16(AC105768|pid:none) Oryza sativa (japonica cultivar-g...   122   5e-27
AC154033_4(AC154033|pid:none) Solanum demissum chromosome 5 clon...   122   5e-27
AC022352_18(AC022352|pid:none) Genomic Sequence for Oryza sativa...   122   7e-27
AC158464_30(AC158464|pid:none) Medicago truncatula chromosome 2 ...   120   3e-26
AC079634_1(AC079634|pid:none) Genomic Sequence for Oryza sativa,...   120   3e-26

 psg: 0.75  gvh: 0.51  alm: 0.33  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 28.0 %: nuclear
	  8.0 %: peroxisomal
	  4.0 %: mitochondrial

>> prediction for SFJ673 is cyt

>SFJ673F.Seq
ATGTATGCAATAAACGGATTTACAGTTGAAGTCGATCAAGTTTGTGTCATTGTTTGTAGA
TTATCTAAAATGGTTCATATAGTTCCATGTCATAAGACAATAGATGCCCAACATACCGTN
CAATTATTGTTGAATCATGTGTTCAGACTCCATGGTTATCCAAGAACAATCGTCTCCGAT
AGAGATCCAAGATTCCTTTCAGAAATATGGGAGAGATGGGCAAAGACGATGGATTCTAAA
CTCAAGATGACTGTGGCACACAGAGCACAAGCTGATGGTCAAACTGAAAGAATGAATAGA
GAAATTATTAGAATATTAACTAAAGCCTCAACAGAGTATGGGGAGAATTGGTCAGATATC
ATTCCACTTATTGAATTTGCAATGAACTCATCAATGAGCAAGTCTACAAAGATGTCACCA
TTCCAAATCGTTTATGGATTCAATCCACCAACTCCCGTTAATCATTTCAATTCATTAACA
AAGACTCGTATACCAATGAGCAACATCAAAAAGATTGNCCGTGATAATATACTAGATGCT
CAAATCAATGCTCAAAAGTATTAC----------