NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFJ661
Library SF
(Link to library)
Clone ID SFJ661
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16182-1
Original site URL
Representative seq. ID SFJ661E
(Link to Original site)
Representative DNA sequence 
>SFJ661 (SFJ661Q) /CSM/SF/SFJ6-C/SFJ661Q.Seq.d/
AAAAAAAATAAACTCATGTACATATAAAAATTAAAATAAAAGAAAAAAAAATGAAAAGGA
CGATAATAATATTATTATTTGTATCATTATTTGTAACATTTGTTTTATCACAAATACCAG
ATAATGATCCAGAATTATGTCAACAAAGAATTCAAAGAGAGGATTGTCCACGAACACCAG
TACCATGGGGAACATTCAATGACAATGACGAAATCGAAGTCTACTATATGCAAGCACCAG
TTTTCGAAGCAGTTTTTGGAAATTTCTTTGGTAAGTTGGGTGGATATCATTCAGCAATTG
GTTTCTATGACCTTACAACTGGTTTAAATTATACAGCAGAATATGATGCTTTCTTTGAAG
TAGGAAATGGTACATTACCAAATATCATAAATGTCGATGGTAAAGATGAACTTTTATGGT
GTAATGCTGGTATCCTTTGTACTGTTCCAAAAACTTATATGGGAACAATTAATGGTACTC
AATTAAATCAATATATCGAATGGATGCAACAATATAATATTTCAAATCCAGTATACCAAA
CATGGGGACGTCTGGAACAATTATGGTCAANATTTGTTTGTTCCATCAACAACATGTGAT
GATTTCACTCAACAATCAATCGAACATTTAGGTAGTATTGGTATTAATTATAATTGTTCA
ACAGTTTTCAANANAGATTACATTAATNTTTTCACTGAAAAACCNCAACCAATCGATTTC
NCAGAACATTATGATGATATCTTTAAATTCTATGAAGCTGTATTANAAATTAAANAAGGN
TCAATTGCNCAAATCATTGAAANAATTTTATCAATCATTGGTTTAAANAAATATATTTAC
GTTCAAGGTGAATATTATTTATTANAATTAAATTATCCATTTATGAATGCAAAATATGAT
TATATCNCATTACCAGGTTGNCCAGCAAATGGNATCGATTATGAAAANGGCAATTTTATT
CATCNCAATTAGACTATTTTAAAATTAGATTATTTTAAATTAAATGGTTATAAATAAAAA
CTAAAAACAAAAATAAAAAAAAAAA
sequence update 2001. 6. 9
Translated Amino Acid sequence 
kk*THVHIKIKIKEKKMKRTIIILLFVSLFVTFVLSQIPDNDPELCQQRIQREDCPRTPV
PWGTFNDNDEIEVYYMQAPVFEAVFGNFFGKLGGYHSAIGFYDLTTGLNYTAEYDAFFEV
GNGTLPNIINVDGKDELLWCNAGILCTVPKTYMGTINGTQLNQYIEWMQQYNISNPVYQT
WGRLEQLWSXFVCSINNM**fhstinrtfr*ywy*l*lfnsfqxrlh*xfh*ktxtnrfx
rtl**yl*il*scixn*xrxncxnh*xnfinhwfkxiylrsr*ilfixiklsiyecki*l
yxitrlxskwxrl*kxqfyssqldyfkirlf*ikwl*iktknknkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
kknklmyi*klk*kkkk*kgr**yyylyhyl*hlfyhkyqimiqnyvnkefkerivhehq
yhgehsmtmtkskstickhqfskqfleislvswvdiiqqlvsmtlqlv*iiqqnmmlslk
*emvhyqis*msmvkmnfygvmlvsfvlfqkliweqlmvln*inisngcnniifqiqytk
hgdvwnnygqxlfvpsttcddftqqsiehlgsiginyncstvfxxdyinxftekpqpidf
xehyddifkfyeavlxikxgsiaqiiexilsiiglxkyiyvqgeyyllxlnypfmnakyd
yixlpgxpangidyexgnfihxn*tilkldyfklngyk*klktkikkk


Frame B:
kkinsctykn*nkrkknekddnniiiciiicnicfitntr**srimstknskrglstnts
tmgniq*q*rnrsllyastsfrssfwkflw*vgwisfsnwfl*pynwfklysri*cfl*s
rkwyitkyhkcrw*r*tfmv*cwyplycsknlygnn*wysiksiyrmdati*yfkssipn
mgtsgtimvxiclfhqqhvmislnnqsni*vvlvliiivqqfsxxitlxfslknxnqsis
qnimmislnsmklyxklxkxqlxkslkxfyqslv*xniftfkvniiyxn*iihl*mqnmi
ishyqvxqqmxsimkxailfixirlf*n*iiln*mvinkn*kqk*kkk


Frame C:
kk*THVHIKIKIKEKKMKRTIIILLFVSLFVTFVLSQIPDNDPELCQQRIQREDCPRTPV
PWGTFNDNDEIEVYYMQAPVFEAVFGNFFGKLGGYHSAIGFYDLTTGLNYTAEYDAFFEV
GNGTLPNIINVDGKDELLWCNAGILCTVPKTYMGTINGTQLNQYIEWMQQYNISNPVYQT
WGRLEQLWSXFVCSINNM**fhstinrtfr*ywy*l*lfnsfqxrlh*xfh*ktxtnrfx
rtl**yl*il*scixn*xrxncxnh*xnfinhwfkxiylrsr*ilfixiklsiyecki*l
yxitrlxskwxrl*kxqfyssqldyfkirlf*ikwl*iktknknkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFJ661 (SFJ661Q) /CSM/SF/SFJ6-C/SFJ661Q.Seq.d/                       1748   0.0
SSK458 (SSK458Q) /CSM/SS/SSK4-C/SSK458Q.Seq.d/                        940   0.0
FC-AD10 (FC-AD10Q) /CSM/FC/FC-AD/FC-AD10Q.Seq.d/                      924   0.0
FC-080 (FC-080Q) /CSM/CG/CG-FC/FC-080Q.Seq.d/                         924   0.0
FC-AG17 (FC-AG17Q) /CSM/FC/FC-AG/FC-AG17Q.Seq.d/                      872   0.0
SSC271 (SSC271Q) /CSM/SS/SSC2-C/SSC271Q.Seq.d/                        835   0.0
VHL857 (VHL857Q) /CSM/VH/VHL8-C/VHL857Q.Seq.d/                        769   0.0
VFL220 (VFL220Q) /CSM/VF/VFL2-A/VFL220Q.Seq.d/                        769   0.0
VFJ281 (VFJ281Q) /CSM/VF/VFJ2-D/VFJ281Q.Seq.d/                        769   0.0
VFH286 (VFH286Q) /CSM/VF/VFH2-D/VFH286Q.Seq.d/                        769   0.0
own update 2002.12. 3
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.   769   0.0    17
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    42   5e-08  18
AE014831|AE014831.1 Plasmodium falciparum 3D7 chromosome 10 section 3 of 7 of the complete sequence.    32   1e-05  17
AC123538|AC123538.3 Sminthopsis macroura clone 79G10, complete sequence.    42   1e-05  4
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    44   2e-05  12
AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence.    44   1e-04  11
AF250284|AF250284.1 Amsacta moorei entomopoxvirus, complete genome.    32   4e-04  15
AC117081|AC117081.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    40   8e-04  15
AL049180|AL049180.3 Plasmodium falciparum DNA *** SEQUENCING IN PROGRESS *** from  MAL13P1.    36   0.001  11
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    38   0.001  15
dna update 2004. 5. 2
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q553W9) RecName: Full=Ceroid-lipofuscinosis neuronal protein 5 ...   306   e-148
AC116305_28(AC116305|pid:none) Dictyostelium discoideum chromoso...   293   5e-78
AK032293_1(AK032293|pid:none) Mus musculus adult male olfactory ...    86   2e-15
BC025487_1(BC025487|pid:none) Mus musculus ceroid-lipofuscinosis...    86   2e-15
AF068227_1(AF068227|pid:none) Homo sapiens putative transmembran...    86   3e-15
AK075109_1(AK075109|pid:none) Homo sapiens cDNA FLJ90628 fis, cl...    84   1e-14
AY885123_1(AY885123|pid:none) Canis familiaris CLN5 (CLN5) gene,...    82   3e-14
(Q5JZQ9) Ceroid-lipofuscinosis neuronal protein 5 precursor (Pro...    82   3e-14
(Q1ZYR0) RecName: Full=Ceroid-lipofuscinosis neuronal protein 5;...    81   7e-14
(A2TJ54) RecName: Full=Ceroid-lipofuscinosis neuronal protein 5;...    81   7e-14
protein update 2009. 7. 3
PSORT 

 psg: 0.47  gvh: 0.86  alm: 0.17  top: -0.13  tms: 0.07  mit: 0.25  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 1.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 24.0 %: cytoplasmic
	 20.0 %: nuclear
	 16.0 %: mitochondrial
	 16.0 %: Golgi
	  8.0 %: vacuolar
	  8.0 %: endoplasmic reticulum
	  4.0 %: extracellular, including cell wall
	  4.0 %: peroxisomal

>> prediction for SFJ661 is cyt
5' end seq. ID SFJ661F
5' end seq. 
>SFJ661F.Seq
AAAAAAAATAAACTCATGTACATATAAAAATTAAAATAAAAGAAAAAAAAATGAAAAGGA
CGATAATAATATTATTATTTGTATCATTATTTGTAACATTTGTTTTATCACAAATACCAG
ATAATGATCCAGAATTATGTCAACAAAGAATTCAAAGAGAGGATTGTCCACGAACACCAG
TACCATGGGGAACATTCAATGACAATGACGAAATCGAAGTCTACTATATGCAAGCACCAG
TTTTCGAAGCAGTTTTTGGAAATTTCTTTGGTAAGTTGGGTGGATATCATTCAGCAATTG
GTTTCTATGACCTTACAACTGGTTTAAATTATACAGCAGAATATGATGCTTTCTTTGAAG
TAGGAAATGGTACATTACCAAATATCATAAATGTCGATGGTAAAGATGAACTTTTATGGT
GTAATGCTGGTATCCTTTGTACTGTTCCAAAAACTTATATGGGAACAATTAATGGTACTC
AATTAAATCAATATATCGAATGGATGCAACAATATAATATTTCAAATCCAGTATACCAAA
CATGGGGACGTCTGGAACAATTATGGTCAA----------
Length of 5' end seq. 570
3' end seq. ID SFJ661Z
3' end seq. 
>SFJ661Z.Seq
----------GATGGTAAAGATGAACTTTTATGGTGTAATGCTGGTATCCTTTGTACTGT
TCCAAAAACTTATATGGGAACAATTAATGGTACTCAATTAAATCAATATATCGAATGGAT
GCAACAATATAATATTTCAAATCCAGTATACCAAACATGGGACGTNTGGAACAATTATGG
TCAANATTTGTTTGTTCCATCAACAACATGTGATGATTTCACTCAACAATCAATCGAACA
TTTAGGTAGTATTGGTATTAATTATAATTGTTCAACAGTTTTCAANANAGATTACATTAA
TNTTTTCACTGAAAAACCNCAACCAATCGATTTCNCAGAACATTATGATGATATCTTTAA
ATTCTATGAAGCTGTATTANAAATTAAANAAGGNTCAATTGCNCAAATCATTGAAANAAT
TTTATCAATCATTGGTTTAAANAAATATATTTACGTTCAAGGTGAATATTATTTATTANA
ATTAAATTATCCATTTATGAATGCAAAATATGATTATATCNCATTACCAGGTTGNCCAGC
AAATGGNATCGATTATGAAAANGGCAATTTTATTCATCNCAATTAGACTATTTTAAAATT
AGATTATTTTAAATTAAATGGTTATAAATAAAAACTAAAAACAAAAATAAAAAAAAAAA
Length of 3' end seq. 649
Connected seq. ID SFJ661P
Connected seq. 
>SFJ661P.Seq
AAAAAAAATAAACTCATGTACATATAAAAATTAAAATAAAAGAAAAAAAAATGAAAAGGA
CGATAATAATATTATTATTTGTATCATTATTTGTAACATTTGTTTTATCACAAATACCAG
ATAATGATCCAGAATTATGTCAACAAAGAATTCAAAGAGAGGATTGTCCACGAACACCAG
TACCATGGGGAACATTCAATGACAATGACGAAATCGAAGTCTACTATATGCAAGCACCAG
TTTTCGAAGCAGTTTTTGGAAATTTCTTTGGTAAGTTGGGTGGATATCATTCAGCAATTG
GTTTCTATGACCTTACAACTGGTTTAAATTATACAGCAGAATATGATGCTTTCTTTGAAG
TAGGAAATGGTACATTACCAAATATCATAAATGTCGATGGTAAAGATGAACTTTTATGGT
GTAATGCTGGTATCCTTTGTACTGTTCCAAAAACTTATATGGGAACAATTAATGGTACTC
AATTAAATCAATATATCGAATGGATGCAACAATATAATATTTCAAATCCAGTATACCAAA
CATGGGGACGTCTGGAACAATTATGGTCAA----------GATGGTAAAGATGAACTTTT
ATGGTGTAATGCTGGTATCCTTTGTACTGTTCCAAAAACTTATATGGGAACAATTAATGG
TACTCAATTAAATCAATATATCGAATGGATGCAACAATATAATATTTCAAATCCAGTATA
CCAAACATGGGACGTNTGGAACAATTATGGTCAANATTTGTTTGTTCCATCAACAACATG
TGATGATTTCACTCAACAATCAATCGAACATTTAGGTAGTATTGGTATTAATTATAATTG
TTCAACAGTTTTCAANANAGATTACATTAATNTTTTCACTGAAAAACCNCAACCAATCGA
TTTCNCAGAACATTATGATGATATCTTTAAATTCTATGAAGCTGTATTANAAATTAAANA
AGGNTCAATTGCNCAAATCATTGAAANAATTTTATCAATCATTGGTTTAAANAAATATAT
TTACGTTCAAGGTGAATATTATTTATTANAATTAAATTATCCATTTATGAATGCAAAATA
TGATTATATCNCATTACCAGGTTGNCCAGCAAATGGNATCGATTATGAAAANGGCAATTT
TATTCATCNCAATTAGACTATTTTAAAATTAGATTATTTTAAATTAAATGGTTATAAATA
AAAACTAAAAACAAAAATAAAAAAAAAAA
Length of connected seq. 1219
Full length Seq ID SFJ661E
Full length Seq. 
>SFJ661E.Seq
AAAAAAAATAAACTCATGTACATATAAAAATTAAAATAAAAGAAAAAAAAATGAAAAGGA
CGATAATAATATTATTATTTGTATCATTATTTGTAACATTTGTTTTATCACAAATACCAG
ATAATGATCCAGAATTATGTCAACAAAGAATTCAAAGAGAGGATTGTCCACGAACACCAG
TACCATGGGGAACATTCAATGACAATGACGAAATCGAAGTCTACTATATGCAAGCACCAG
TTTTCGAAGCAGTTTTTGGAAATTTCTTTGGTAAGTTGGGTGGATATCATTCAGCAATTG
GTTTCTATGACCTTACAACTGGTTTAAATTATACAGCAGAATATGATGCTTTCTTTGAAG
TAGGAAATGGTACATTACCAAATATCATAAATGTCGATGGTAAAGATGAACTTTTATGGT
GTAATGCTGGTATCCTTTGTACTGTTCCAAAAACTTATATGGGAACAATTAATGGTACTC
AATTAAATCAATATATCGAATGGATGCAACAATATAATATTTCAAATCCAGTATACCAAA
CATGGGGACGTCTGGAACAATTATGGTCAANATTTGTTTGTTCCATCAACAACATGTGAT
GATTTCACTCAACAATCAATCGAACATTTAGGTAGTATTGGTATTAATTATAATTGTTCA
ACAGTTTTCAANANAGATTACATTAATNTTTTCACTGAAAAACCNCAACCAATCGATTTC
NCAGAACATTATGATGATATCTTTAAATTCTATGAAGCTGTATTANAAATTAAANAAGGN
TCAATTGCNCAAATCATTGAAANAATTTTATCAATCATTGGTTTAAANAAATATATTTAC
GTTCAAGGTGAATATTATTTATTANAATTAAATTATCCATTTATGAATGCAAAATATGAT
TATATCNCATTACCAGGTTGNCCAGCAAATGGNATCGATTATGAAAANGGCAATTTTATT
CATCNCAATTAGACTATTTTAAAATTAGATTATTTTAAATTAAATGGTTATAAATAAAAA
CTAAAAACAAAAATAAAAAAAAAAA
Length of full length seq. 1045