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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFJ641
Library SF
(Link to library)
Clone ID SFJ641
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12898-1
Original site URL
Representative seq. ID SFJ641P
(Link to Original site)
Representative DNA sequence 
>SFJ641 (SFJ641Q) /CSM/SF/SFJ6-B/SFJ641Q.Seq.d/
AATTAACAAGTTTTTACAATGAGTACTACAACTAATAAAAGCCAATTAGAGTTTATGTTG
ATGGTTGTTTTGATTTAATGCATTTTGGACATGCAAATGCATTAAGACAAGCAAGAGAAT
TAGGAGATATTTTAGTAGTTGGTGTACATACAGATGAAGAAATTGCAAAAAATAAAGGTC
CACCAGTTATGAATGAACAAGAAAGATATAAAGCAGTACGTGCATGTAAATGGGCAGATG
AAGTTGCAGAAGGTGCACCTTATACTTTAACTGAAGAATATTTGGATAGTTTAAACTGTG
ATTTTTGTGTACATGGTGAAGATATTTCAGTTGGTGCAGATGGTAAAGATGTTTATGAAG
GCATTAAAAAGAGTGGTAAATTTAGATTCATCAAACGTACTGAAGGTGTTTCAACAACCG
AGTTGGTTGGTCGTATGTTATTATGCACCAAAGACCATCTTCAAAATGTTTCAGGTGAGC
AAACCTCACCATTGGGAGGTGTCAATCCAAACGTTTTACACAAACAATCACCATACACAA
GTTTATCACATTTCCTCCCAACCACCAGXXXXXXXXXXTTATCACATTTCCTCCCAACCA
CCAGAAAGATCGTCCAATTCTCAGAAGGTCGTTCACCAAAACCAAACGATAAAATCATTT
ATATGGATGGTGGTTTCGATTTATTCCATGTAGGTCATACTGAGGCTTTGAAACAAGCAA
NAGCACTCGGTGACTATCTCATCGTTGGTGTTCATGATGATANAGTAGTTCNCGAACAAA
AAGGTAGCAACTTCCCAATTATGAATTTACATGAACGTGTACTCTCTGNACTCTCATGTC
GTTATGTCGATGAAGTTGTCATTGGTGCTCCATTCAGTGTCACCAAANATATGATTGACT
CNCTTCACATCAATGTTGTCGTTCATGGTGATGATCAAGTTGNACTCGGTCCANAAGGTG
GTGTAGATCCATACAAACTCCCAANAGAATTAGGTATTTACAAANAAGTTAAACATACTG
AAGGTCTCNCTGCAACTGAAATCGTTAAAAGAATCATTGATAATAGACTTCAATATGAAG
CTCGTAATCGTAAAAAANAAGCAAAAGAAATTAATTTCATTGAACAATCNAATTAAAAAA
AATTAAAAAATAAAAAATAAAAATAAAACAAATAAAAAAAAAAATAGAAAAAAAAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
ltsfyneyyn**KPIRVYVDGCFDLMHFGHANALRQARELGDILVVGVHTDEEIAKNKGP
PVMNEQERYKAVRACKWADEVAEGAPYTLTEEYLDSLNCDFCVHGEDISVGADGKDVYEG
IKKSGKFRFIKRTEGVSTTELVGRMLLCTKDHLQNVSGEQTSPLGGVNPNVLHKQSPYTS
LSHFLPTT---

---LSHFLPTTRKIVQFSEGRSPKPNDKIIYMDGGFDLFHVGHTEALKQAXALGDYLIVG
VHDDXVVXEQKGSNFPIMNLHERVLSXLSCRYVDEVVIGAPFSVTKXMIDSLHINVVVHG
DDQVXLGPXGGVDPYKLPXELGIYKXVKHTEGLXATEIVKRIIDNRLQYEARNRKKXAKE
INFIEQSN*kklknkk*k*nk*kkk*kkk
Translated Amino Acid sequence (All Frames) 
Frame A:
n*qvftmstttnksqlefmlmvvli*cildmqmh*dkqen*eif**lvyiqmkklqkikv
hql*mnkkdikqyvhvngqmklqkvhlil*lkniwiv*tvifvymvkifqlvqmvkmfmk
alkrvvnldssnvlkvfqqpswlvvcyyapktifkmfqvskphhwevsiqtfytnnhhtq
vyhissqpp---

---LSHFLPTTRKIVQFSEGRSPKPNDKIIYMDGGFDLFHVGHTEALKQAXALGDYLIVG
VHDDXVVXEQKGSNFPIMNLHERVLSXLSCRYVDEVVIGAPFSVTKXMIDSLHINVVVHG
DDQVXLGPXGGVDPYKLPXELGIYKXVKHTEGLXATEIVKRIIDNRLQYEARNRKKXAKE
INFIEQSN*kklknkk*k*nk*kkk*kkk

Frame B:
inkflq*vlqlikan*slc*wlf*fnafwtckciktskrirryfsswctyr*rnckk*rs
tsye*trki*sstcm*mgr*scrrctlyfn*rifg*fkl*flctw*ryfswcrw*rcl*r
h*kew*i*ihqty*rcfnnrvgwsyvimhqrpsskcfr*anltigrcqskrftqtitihk
fitfppnhq---

---yhissqpperssnsqkvvhqnqtiksfiwmvvsiysm*vilrl*nkqxhsvtisslv
fmmix*fxnkkvatsql*iymnvyslxshvvmsmklslvlhsvspxi*ltxftsmlsfmv
miklxsvxkvv*ihtnsqxn*vftxklnilkvslqlkslkesliidfnmklvivkxkqkk
lislnnxikkn*kiknknktnkkknrkk

Frame C:
ltsfyneyyn**KPIRVYVDGCFDLMHFGHANALRQARELGDILVVGVHTDEEIAKNKGP
PVMNEQERYKAVRACKWADEVAEGAPYTLTEEYLDSLNCDFCVHGEDISVGADGKDVYEG
IKKSGKFRFIKRTEGVSTTELVGRMLLCTKDHLQNVSGEQTSPLGGVNPNVLHKQSPYTS
LSHFLPTT---

---itfppnhqkdrpilrrsftktkr*nhlygwwfrfipcrsy*gfetsxstr*lshrwc
s**xsssrtkr*qlpnyeft*tctlxtlmslcr*schwcsiqchqxyd*lxshqccrsw*
*ssxtrsxrwcrsiqtpxrirylqxs*ty*rsxcn*nr*knh***tsi*ss*s*kxskrn
*fh*tixlkkikk*kikikqikkkiekk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFJ641 (SFJ641Q) /CSM/SF/SFJ6-B/SFJ641Q.Seq.d/                       2062   0.0
VFN722 (VFN722Q) /CSM/VF/VFN7-A/VFN722Q.Seq.d/                       1112   0.0
VFF663 (VFF663Q) /CSM/VF/VFF6-C/VFF663Q.Seq.d/                       1112   0.0
VFF530 (VFF530Q) /CSM/VF/VFF5-B/VFF530Q.Seq.d/                       1112   0.0
VFE318 (VFE318Q) /CSM/VF/VFE3-A/VFE318Q.Seq.d/                       1112   0.0
VFM413 (VFM413Q) /CSM/VF/VFM4-A/VFM413Q.Seq.d/                       1104   0.0
VFI626 (VFI626Q) /CSM/VF/VFI6-B/VFI626Q.Seq.d/                       1104   0.0
VFG581 (VFG581Q) /CSM/VF/VFG5-D/VFG581Q.Seq.d/                       1104   0.0
AFF388 (AFF388Q) /CSM/AF/AFF3-D/AFF388Q.Seq.d/                       1104   0.0
CFG421 (CFG421Q) /CSM/CF/CFG4-A/CFG421Q.Seq.d/                       1098   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BG140383|BG140383.1 EST480825 wild tomato pollen Lycopersicon pennellii cDNA clonecLPP17G1 5' sequence, mRNA sequence.    92   6e-16  3
BG131085|BG131085.1 EST463977 tomato crown gall Lycopersicon esculentum cDNA clone cTOE2D11 5' sequence, mRNA sequence.    92   1e-15  3
AW217896|AW217896.1 EST296610 tomato flower buds, anthesis, Cornell University Lycopersicon esculentum cDNA clone cTOD1C15, mRNA sequence.    92   7e-15  2
AI778006|AI778006.1 EST258885 tomato susceptible, Cornell Lycopersicon esculentum cDNA clone cLES3N17, mRNA sequence.    92   8e-15  2
AW217261|AW217261.1 EST295975 tomato callus, TAMU Lycopersicon esculentum cDNA clone cLEC89G22, mRNA sequence.    92   9e-15  2
AW219042|AW219042.1 EST301524 tomato root during/after fruit set, Cornell University Lycopersicon esculentum cDNA clone cLEX2H3, mRNA sequence.    92   9e-15  2
BG138134|BG138134.1 EST478576 wild tomato pollen Lycopersicon pennellii cDNA clone cLPP8K18 5' sequence, mRNA sequence.    92   9e-15  2
BG642411|BG642411.1 EST355887 tomato flower buds, anthesis, Cornell University Lycopersicon esculentum cDNA clone cTOD11C15 5' end, mRNA sequence.    92   1e-14  2
BG133537|BG133537.1 EST466525 tomato crown gall Lycopersicon esculentum cDNA clone cTOE13N15 5' sequence, mRNA sequence.    92   2e-14  1
BI935302|BI935302.1 EST555191 tomato flower, anthesis Lycopersicon esculentum cDNA clone cTOD22O12 5' end, mRNA sequence.    92   2e-14  1
dna update 2004. 1. 6
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55BZ4) RecName: Full=Ethanolamine-phosphate cytidylyltransfera...   682   0.0
AE014134_2379(AE014134|pid:none) Drosophila melanogaster chromos...   372   e-101
AK166319_1(AK166319|pid:none) Mus musculus mammary gland RCB-052...   363   5e-99
AL663030_9(AL663030|pid:none) Mouse DNA sequence from clone RP23...   363   6e-99
(Q5EA75) RecName: Full=Ethanolamine-phosphate cytidylyltransfera...   362   1e-98
BT077764_1(BT077764|pid:none) Lepeophtheirus salmonis clone lsal...   361   2e-98
AY189524_1(AY189524|pid:none) Mus musculus CTP:ethanolaminephosp...   357   4e-97
AM502250_130(AM502250|pid:none) Leishmania infantum chromosome 32.    356   8e-97
AM494969_98(AM494969|pid:none) Leishmania braziliensis chromosom...   355   1e-96
BC088018_1(BC088018|pid:none) Xenopus tropicalis phosphate cytid...   355   2e-96
protein update 2009. 5.27
PSORT 

 psg: 0.80  gvh: 0.53  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.24  mip: 0.02
 nuc: 0.08  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 40.0 %: nuclear
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for SFJ641 is cyt
5' end seq. ID SFJ641F
5' end seq. 
>SFJ641F.Seq
AATTAACAAGTTTTTACAATGAGTACTACAACTAATAAAAGCCAATTAGAGTTTATGTTG
ATGGTTGTTTTGATTTAATGCATTTTGGACATGCAAATGCATTAAGACAAGCAAGAGAAT
TAGGAGATATTTTAGTAGTTGGTGTACATACAGATGAAGAAATTGCAAAAAATAAAGGTC
CACCAGTTATGAATGAACAAGAAAGATATAAAGCAGTACGTGCATGTAAATGGGCAGATG
AAGTTGCAGAAGGTGCACCTTATACTTTAACTGAAGAATATTTGGATAGTTTAAACTGTG
ATTTTTGTGTACATGGTGAAGATATTTCAGTTGGTGCAGATGGTAAAGATGTTTATGAAG
GCATTAAAAAGAGTGGTAAATTTAGATTCATCAAACGTACTGAAGGTGTTTCAACAACCG
AGTTGGTTGGTCGTATGTTATTATGCACCAAAGACCATCTTCAAAATGTTTCAGGTGAGC
AAACCTCACCATTGGGAGGTGTCAATCCAAACGTTTTACACAAACAATCACCATACACAA
GTTTATCACATTTCCTCCCAACCACCAG----------
Length of 5' end seq. 568
3' end seq. ID SFJ641Z
3' end seq. 
>SFJ641Z.Seq
----------TTATCACATTTCCTCCCAACCACCAGAAAGATCGTCCAATTCTCAGAAGG
TCGTTCACCAAAACCAAACGATAAAATCATTTATATGGATGGTGGTTTCGATTTATTCCA
TGTAGGTCATACTGAGGCTTTGAAACAAGCAANAGCACTCGGTGACTATCTCATCGTTGG
TGTTCATGATGATANAGTAGTTCNCGAACAAAAAGGTAGCAACTTCCCAATTATGAATTT
ACATGAACGTGTACTCTCTGNACTCTCATGTCGTTATGTCGATGAAGTTGTCATTGGTGC
TCCATTCAGTGTCACCAAANATATGATTGACTCNCTTCACATCAATGTTGTCGTTCATGG
TGATGATCAAGTTGNACTCGGTCCANAAGGTGGTGTAGATCCATACAAACTCCCAANAGA
ATTAGGTATTTACAAANAAGTTAAACATACTGAAGGTCTCNCTGCAACTGAAATCGTTAA
AAGAATCATTGATAATAGACTTCAATATGAAGCTCGTAATCGTAAAAAANAAGCAAAAGA
AATTAATTTCATTGAACAATCNAATTAAAAAAAATTAAAAAATAAAAAATAAAAATAAAA
CAAATAAAAAAAAAAATAGAAAAAAAAA
Length of 3' end seq. 618
Connected seq. ID SFJ641P
Connected seq. 
>SFJ641P.Seq
AATTAACAAGTTTTTACAATGAGTACTACAACTAATAAAAGCCAATTAGAGTTTATGTTG
ATGGTTGTTTTGATTTAATGCATTTTGGACATGCAAATGCATTAAGACAAGCAAGAGAAT
TAGGAGATATTTTAGTAGTTGGTGTACATACAGATGAAGAAATTGCAAAAAATAAAGGTC
CACCAGTTATGAATGAACAAGAAAGATATAAAGCAGTACGTGCATGTAAATGGGCAGATG
AAGTTGCAGAAGGTGCACCTTATACTTTAACTGAAGAATATTTGGATAGTTTAAACTGTG
ATTTTTGTGTACATGGTGAAGATATTTCAGTTGGTGCAGATGGTAAAGATGTTTATGAAG
GCATTAAAAAGAGTGGTAAATTTAGATTCATCAAACGTACTGAAGGTGTTTCAACAACCG
AGTTGGTTGGTCGTATGTTATTATGCACCAAAGACCATCTTCAAAATGTTTCAGGTGAGC
AAACCTCACCATTGGGAGGTGTCAATCCAAACGTTTTACACAAACAATCACCATACACAA
GTTTATCACATTTCCTCCCAACCACCAG----------TTATCACATTTCCTCCCAACCA
CCAGAAAGATCGTCCAATTCTCAGAAGGTCGTTCACCAAAACCAAACGATAAAATCATTT
ATATGGATGGTGGTTTCGATTTATTCCATGTAGGTCATACTGAGGCTTTGAAACAAGCAA
NAGCACTCGGTGACTATCTCATCGTTGGTGTTCATGATGATANAGTAGTTCNCGAACAAA
AAGGTAGCAACTTCCCAATTATGAATTTACATGAACGTGTACTCTCTGNACTCTCATGTC
GTTATGTCGATGAAGTTGTCATTGGTGCTCCATTCAGTGTCACCAAANATATGATTGACT
CNCTTCACATCAATGTTGTCGTTCATGGTGATGATCAAGTTGNACTCGGTCCANAAGGTG
GTGTAGATCCATACAAACTCCCAANAGAATTAGGTATTTACAAANAAGTTAAACATACTG
AAGGTCTCNCTGCAACTGAAATCGTTAAAAGAATCATTGATAATAGACTTCAATATGAAG
CTCGTAATCGTAAAAAANAAGCAAAAGAAATTAATTTCATTGAACAATCNAATTAAAAAA
AATTAAAAAATAAAAAATAAAAATAAAACAAATAAAAAAAAAAATAGAAAAAAAAA
Length of connected seq. 1186
Full length Seq ID -
Full length Seq. -
Length of full length seq. -