SFJ625
Library SF
(Link to library)
Clone ID SFJ625
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16569-1
Original site URL
Representative seq. ID SFJ625E
(Link to Original site)
Representative DNA sequence
>SFJ625 (SFJ625Q) /CSM/SF/SFJ6-B/SFJ625Q.Seq.d/
TTCTTATCGCTACCAAAAACAATGTATGCAATAAACGGATTTACAGTTGAAGTCGATCAA
GTTTGTGTCATTGTTTGTAGATTATCTAAAATGGTTCATATAGTTCCATGTCATAAGACA
ATAGATGCCCAACATACCGTTCAATTATTGTTGAATCATGTGTTCAGACTCCATGGTTAT
CCAAGAACAATCGTCTCCGATAGAGATCCAAGATTCCTTTCAGAAATATGGGAGAGATGG
GCAAAGACGATGGATTCTAAACTCAAGATGACTGTGGCACACAGAGCACAAGCTGATGGT
CAAACTGAAAGAATGAATAGAGAAATTATTAGAATATTAACTAAAGCCTCAACAGAGTAT
GGGGAGAATTGGTCAGATATCATTCCACTTATTGAATTTGCAATGAACTCATCAATGAGC
AAGTCTACAAAGATGTCACCATTCCAAATCGTTTATGGATTCAATCCACCAACTCCCGTT
AATCATTTCAATTCATTAACAAAGACTCGTATACCAATGAGCAACATCAAAAAGATTGTC
CGTGATAATATACTAGATGCTCAAATCAATGCTCAAAAGTATTACAACCGAGGTCGTGGT
GATGTTATCTTCGTAGTCGGAGAAAAGGTGATGGTTAAAAGAAAATTCTTCCAAACTAAT
CTTTCAAAAGATCTAATCTCTCACAAACTTGAATCCAAGAATTGTGGACCATTCATAATC
ACTGCCGTTCATGGTAATAATGTAACACTCGATTTAGTAGGTTATCCAAAGAAACACAAT
GTGTTCAACAAAGATCAAATCGTAAAACTATACGAGGACAGTGAGTGGTTAAGAGAAGAG
ATATCGATGCCGGAACCTGAGGAGATGGACGAAGCAAGTTACGAAGTTGAAAGTATTCTC
AATCACGATAAAGTCAAAAAGATGTACCTAGTGAAGTTCAAAGGTTACCCAGAACCTGAA
TGGATCAAAGAAGTCGATACAGGCTGTGAAGAGTTAGTCAGAGAGTATTGGAATAACGTG
CAGAAGAAACAATTGAACTCAAGAAGAGAAAGAGAGAATGTAACTACAGAAGCCGTTGAG
CCAATTGTGTCACCTCCACTCTCCCAAGAAGTTCAAAGTTCTCAAACATTGCAACCAATT
ACTCCAAGACAACAAAACTCCTCTCAAANCAAAGAAAC
sequence update 2001. 6. 9
Translated Amino Acid sequence
FLSLPKTMYAINGFTVEVDQVCVIVCRLSKMVHIVPCHKTIDAQHTVQLLLNHVFRLHGY
PRTIVSDRDPRFLSEIWERWAKTMDSKLKMTVAHRAQADGQTERMNREIIRILTKASTEY
GENWSDIIPLIEFAMNSSMSKSTKMSPFQIVYGFNPPTPVNHFNSLTKTRIPMSNIKKIV
RDNILDAQINAQKYYNRGRGDVIFVVGEKVMVKRKFFQTNLSKDLISHKLESKNCGPFII
TAVHGNNVTLDLVGYPKKHNVFNKDQIVKLYEDSEWLREEISMPEPEEMDEASYEVESIL
NHDKVKKMYLVKFKGYPEPEWIKEVDTGCEELVREYWNNVQKKQLNSRRERENVTTEAVE
PIVSPPLSQEVQSSQTLQPITPRQQNSSQXKE


Translated Amino Acid sequence (All Frames)
Frame A:
FLSLPKTMYAINGFTVEVDQVCVIVCRLSKMVHIVPCHKTIDAQHTVQLLLNHVFRLHGY
PRTIVSDRDPRFLSEIWERWAKTMDSKLKMTVAHRAQADGQTERMNREIIRILTKASTEY
GENWSDIIPLIEFAMNSSMSKSTKMSPFQIVYGFNPPTPVNHFNSLTKTRIPMSNIKKIV
RDNILDAQINAQKYYNRGRGDVIFVVGEKVMVKRKFFQTNLSKDLISHKLESKNCGPFII
TAVHGNNVTLDLVGYPKKHNVFNKDQIVKLYEDSEWLREEISMPEPEEMDEASYEVESIL
NHDKVKKMYLVKFKGYPEPEWIKEVDTGCEELVREYWNNVQKKQLNSRRERENVTTEAVE
PIVSPPLSQEVQSSQTLQPITPRQQNSSQXKE


Frame B:
syryqkqcmq*tdlqlksikfvslfvdylkwfi*fhvirq*mpnipfnyc*imcsdsmvi
qeqsspieiqdsfqkygrdgqrrwilnsr*lwhtehklmvklke*ieklley*lkpqqsm
grigqisfhllnlq*thq*aslqrchhsksfmdsihqlpliisih*qrlvyq*atskrls
viiy*mlksmlksittevvvmlss*sekr*wlkenssklifqki*sltnlnprivdhs*s
lpfmvim*hsi**viqrntmcstkiks*nytrtvsg*ekryrcrnlrrwtkqvtklkvfs
itikskrct**sskvtqnlngskksiqavks*sesigitcrrnn*tqeekerm*lqkpls
qlchlhspkkfkvlkhcnqllqdnktplkxkk


Frame C:
liatknnvcnkriys*srsslchcl*ii*ngsyssms*dnrcptyrsiivescvqtpwls
knnrlr*rskipfrnmgemgkddgf*tqddcgtqsts*wsn*kne*rny*nin*slnrvw
gelvryhsty*icnelineqvykdvtipnrlwiqstnsr*sfqfinkdsytneqhqkdcp
**ytrcsnqcskvlqprsw*cylrsrrkgdg*kkilpn*sfkrsnlsqt*iqelwtihnh
crsw**cntrfsrlsketqcvqqrsnrktirgq*vvkrrdidagt*gdgrsklrs*kysq
sr*sqkdvpsevqrlprt*mdqrsryrl*rvsqrvle*raeetielkkrkrecnyrsr*a
ncvtstlprsskfsniatnyskttkllsxqrn


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFJ625 (SFJ625Q) /CSM/SF/SFJ6-B/SFJ625Q.Seq.d/ 2329 0.0
SHC842 (SHC842Q) /CSM/SH/SHC8-B/SHC842Q.Seq.d/ 1532 0.0
AHA263 (AHA263Q) /CSM/AH/AHA2-C/AHA263Q.Seq.d/ 1532 0.0
VHK230 (VHK230Q) /CSM/VH/VHK2-B/VHK230Q.Seq.d/ 1499 0.0
AHC690 (AHC690Q) /CSM/AH/AHC6-D/AHC690Q.Seq.d/ 1499 0.0
SHL821 (SHL821Q) /CSM/SH/SHL8-A/SHL821Q.Seq.d/ 1483 0.0
AHM541 (AHM541Q) /CSM/AH/AHM5-B/AHM541Q.Seq.d/ 1475 0.0
AHB822 (AHB822Q) /CSM/AH/AHB8-A/AHB822Q.Seq.d/ 1475 0.0
AHF244 (AHF244Q) /CSM/AH/AHF2-B/AHF244Q.Seq.d/ 1473 0.0
AHN739 (AHN739Q) /CSM/AH/AHN7-B/AHN739Q.Seq.d/ 1461 0.0

own update 2002.10.11
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AF049230|AF049230.1 Dictyostelium discoideum LTR-retrotransposon Skipper, Gag (gag) gene, complete cds; and Pro (pro) and Pol (pol) genes, partial cds. 2214 0.0 1
AF017040|AF017040.1 Dictyostelium discoideum LTR-retrotransposon Skipper, Gag (gag) mRNA, complete cds; and Pro (pro) and Pol (pol) mRNA, partial cds. 2214 0.0 1
AC073258|AC073258.9 Homo sapiens BAC clone RP11-221B19 from 7, complete sequence. 34 0.002 8
AC133193|AC133193.3 Mus musculus BAC clone RP23-396L1 from chromosome 2, complete sequence. 36 0.008 13
BX284624|BX284624.4 Mouse DNA sequence from clone RP23-299A2 on chromosome 2. 36 0.038 12
AC101936|AC101936.4 Mus musculus chromosome 12 clone RP24-79M15 map 12, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces. 44 0.060 9
BZ485785|BZ485785.1 BONDU72TR BO_1.6_2_KB_tot Brassica oleracea genomic clone BONDU72, DNA sequence. 38 0.24 3
AC073048|AC073048.7 Homo sapiens BAC clone RP11-54E21 from 7, complete sequence. 48 0.30 1
AC080074|AC080074.3 Homo sapiens chromosome 7 clone RP11-338F10, WORKING DRAFT SEQUENCE, 28 unordered pieces. 48 0.30 1
AL136359|AL136359.13 Human DNA sequence from clone RP11-24H2 on chromosome 13. 36 0.32 9
dna update 2004. 5. 2
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AF049230_3(AF049230|pid:none) Dictyostelium discoideum LTR-retro... 755 0.0
AP007151_1375(AP007151|pid:none) Aspergillus oryzae RIB40 genomi... 156 2e-36
L35053_2(L35053|pid:none) Magnaporthe grisea transposon LTR retr... 138 3e-31
AY334361_3(AY334361|pid:none) Petunia x hybrida clone 3 integrat... 138 3e-31
AC154033_4(AC154033|pid:none) Solanum demissum chromosome 5 clon... 137 1e-30
AJ439555_2(AJ439555|pid:none) Saccharomyces exiguus LTR-retrotra... 136 1e-30
AY830091_2(AY830091|pid:none) Phytophthora infestans gypsy-like ... 135 3e-30
AC105768_16(AC105768|pid:none) Oryza sativa (japonica cultivar-g... 132 2e-29
AB028236_3(AB028236|pid:none) Tricholoma matsutake LTR retroelem... 132 2e-29
AY129008_1(AY129008|pid:none) Zea mays CRM centromeric retrotran... 132 3e-29
protein update 2009. 7. 3
PSORT

psg: 0.84 gvh: 0.51 alm: 0.33 top: 0.40 tms: 0.00 mit: 0.30 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
32.0 %: nuclear
8.0 %: mitochondrial
8.0 %: peroxisomal
4.0 %: cytoskeletal

>> prediction for SFJ625 is cyt

5' end seq. ID SFJ625F
5' end seq.
>SFJ625F.Seq
TTCTTATCGCTACCAAAAACAATGTATGCAATAAACGGATTTACAGTTGAAGTCGATCAA
GTTTGTGTCATTGTTTGTAGATTATCTAAAATGGTTCATATAGTTCCATGTCATAAGACA
ATAGATGCCCAACATACCGTTCAATTATTGTTGAATCATGTGTTCAGACTCCATGGTTAT
CCAAGAACAATCGTCTCCGATAGAGATCCAAGATTCCTTTCAGAAATATGGGAGAGATGG
GCAAAGACGATGGATTCTAAACTCAAGATGACTGTGGCACACAGAGCACAAGCTGATGGT
CAAACTGAAAGAATGAATAGAGAAATTATTAGAATATTAACTAAAGCCTCAACAGAGTAT
GGGGAGAATTGGTCAGATATCATTCCACTTATTGAATTTGCAATGAACTCATCAATGAGC
AAGTCTACAAAGATGTCACCATTCCAAATCGTTTATGGATTCAATCCACCAACTCCCGTT
AATCATTTCAATTCATTAACAAAGACTCGTATACCAATGAGCAACATCAAAAAGATTGTC
CGTGATAATATACTAGATGCTCAAATCAATGCTCAAAAGTATTACAACCGAGGTCGTGGT
GATGTTATCTTCGTAGTCGGAGAAAAGGTGATGGTTAAAAGAAAATT----------
Length of 5' end seq. 647
3' end seq. ID SFJ625Z
3' end seq.
>SFJ625Z.Seq
----------TCCGTGATAATATACTAGATGCTCAAATCAATGCTCAAAAGTATTACAAC
CGAGGTCGTGGTGATGTTATCTTCGTAGTCGGAGAAAAGGTGATGGTTAAAAGAAAATTC
TTCCAAACTAATCTTTCAAAAGATCTAATCTCTCACAAACTTGAATCCAAGAATTGTGGA
CCATTCATAATCACTGCCGTTCATGGTAATAATGTAACACTCGATTTAGTAGGTTATCCA
AAGAAACACAATGTGTTCAACAAAGATCAAATCGTAAAACTATACGAGGACAGTGAGTGG
TTAAGAGAAGAGATATCGATGCCGGAACCTGAGGAGATGGACGAAGCAAGTTACGAAGTT
GAAAGTATTCTCAATCACGATAAAGTCAAAAAGATGTACCTAGTGAAGTTCAAAGGTTAC
CCAGAACCTGAATGGATCAAAGAAGTCGATACAGGCTGTGAAGAGTTAGTCAGAGAGTAT
TGGAATAACGTGCAGAAGAAACAATTGAACTCAAGAAGAGAAAGAGAGAATGTAACTACA
GAAGCCGTTGAGCCAATTGTGTCACCTCCACTCTCCCAAGAAGTTCAAAGTTCTCAAACA
TTGCAACCAATTACTCCAAGACAACAAAACTCCTCTCAAANCAAAGAAAC
Length of 3' end seq. 640
Connected seq. ID SFJ625P
Connected seq.
>SFJ625P.Seq
TTCTTATCGCTACCAAAAACAATGTATGCAATAAACGGATTTACAGTTGAAGTCGATCAA
GTTTGTGTCATTGTTTGTAGATTATCTAAAATGGTTCATATAGTTCCATGTCATAAGACA
ATAGATGCCCAACATACCGTTCAATTATTGTTGAATCATGTGTTCAGACTCCATGGTTAT
CCAAGAACAATCGTCTCCGATAGAGATCCAAGATTCCTTTCAGAAATATGGGAGAGATGG
GCAAAGACGATGGATTCTAAACTCAAGATGACTGTGGCACACAGAGCACAAGCTGATGGT
CAAACTGAAAGAATGAATAGAGAAATTATTAGAATATTAACTAAAGCCTCAACAGAGTAT
GGGGAGAATTGGTCAGATATCATTCCACTTATTGAATTTGCAATGAACTCATCAATGAGC
AAGTCTACAAAGATGTCACCATTCCAAATCGTTTATGGATTCAATCCACCAACTCCCGTT
AATCATTTCAATTCATTAACAAAGACTCGTATACCAATGAGCAACATCAAAAAGATTGTC
CGTGATAATATACTAGATGCTCAAATCAATGCTCAAAAGTATTACAACCGAGGTCGTGGT
GATGTTATCTTCGTAGTCGGAGAAAAGGTGATGGTTAAAAGAAAATT----------TCC
GTGATAATATACTAGATGCTCAAATCAATGCTCAAAAGTATTACAACCGAGGTCGTGGTG
ATGTTATCTTCGTAGTCGGAGAAAAGGTGATGGTTAAAAGAAAATTCTTCCAAACTAATC
TTTCAAAAGATCTAATCTCTCACAAACTTGAATCCAAGAATTGTGGACCATTCATAATCA
CTGCCGTTCATGGTAATAATGTAACACTCGATTTAGTAGGTTATCCAAAGAAACACAATG
TGTTCAACAAAGATCAAATCGTAAAACTATACGAGGACAGTGAGTGGTTAAGAGAAGAGA
TATCGATGCCGGAACCTGAGGAGATGGACGAAGCAAGTTACGAAGTTGAAAGTATTCTCA
ATCACGATAAAGTCAAAAAGATGTACCTAGTGAAGTTCAAAGGTTACCCAGAACCTGAAT
GGATCAAAGAAGTCGATACAGGCTGTGAAGAGTTAGTCAGAGAGTATTGGAATAACGTGC
AGAAGAAACAATTGAACTCAAGAAGAGAAAGAGAGAATGTAACTACAGAAGCCGTTGAGC
CAATTGTGTCACCTCCACTCTCCCAAGAAGTTCAAAGTTCTCAAACATTGCAACCAATTA
CTCCAAGACAACAAAACTCCTCTCAAANCAAAGAAAC
Length of connected seq. 1287
Full length Seq ID SFJ625E
Full length Seq.
>SFJ625E.Seq
TTCTTATCGCTACCAAAAACAATGTATGCAATAAACGGATTTACAGTTGAAGTCGATCAA
GTTTGTGTCATTGTTTGTAGATTATCTAAAATGGTTCATATAGTTCCATGTCATAAGACA
ATAGATGCCCAACATACCGTTCAATTATTGTTGAATCATGTGTTCAGACTCCATGGTTAT
CCAAGAACAATCGTCTCCGATAGAGATCCAAGATTCCTTTCAGAAATATGGGAGAGATGG
GCAAAGACGATGGATTCTAAACTCAAGATGACTGTGGCACACAGAGCACAAGCTGATGGT
CAAACTGAAAGAATGAATAGAGAAATTATTAGAATATTAACTAAAGCCTCAACAGAGTAT
GGGGAGAATTGGTCAGATATCATTCCACTTATTGAATTTGCAATGAACTCATCAATGAGC
AAGTCTACAAAGATGTCACCATTCCAAATCGTTTATGGATTCAATCCACCAACTCCCGTT
AATCATTTCAATTCATTAACAAAGACTCGTATACCAATGAGCAACATCAAAAAGATTGTC
CGTGATAATATACTAGATGCTCAAATCAATGCTCAAAAGTATTACAACCGAGGTCGTGGT
GATGTTATCTTCGTAGTCGGAGAAAAGGTGATGGTTAAAAGAAAATTCTTCCAAACTAAT
CTTTCAAAAGATCTAATCTCTCACAAACTTGAATCCAAGAATTGTGGACCATTCATAATC
ACTGCCGTTCATGGTAATAATGTAACACTCGATTTAGTAGGTTATCCAAAGAAACACAAT
GTGTTCAACAAAGATCAAATCGTAAAACTATACGAGGACAGTGAGTGGTTAAGAGAAGAG
ATATCGATGCCGGAACCTGAGGAGATGGACGAAGCAAGTTACGAAGTTGAAAGTATTCTC
AATCACGATAAAGTCAAAAAGATGTACCTAGTGAAGTTCAAAGGTTACCCAGAACCTGAA
TGGATCAAAGAAGTCGATACAGGCTGTGAAGAGTTAGTCAGAGAGTATTGGAATAACGTG
CAGAAGAAACAATTGAACTCAAGAAGAGAAAGAGAGAATGTAACTACAGAAGCCGTTGAG
CCAATTGTGTCACCTCCACTCTCCCAAGAAGTTCAAAGTTCTCAAACATTGCAACCAATT
ACTCCAAGACAACAAAACTCCTCTCAAANCAAAGAAAC
Length of full length seq. 1178