SFJ609
Library SF
(Link to library)
Clone ID SFJ609
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15106-1
Original site URL
Representative seq. ID SFJ609F
(Link to Original site)
Representative DNA sequence
>SFJ609 (SFJ609Q) /CSM/SF/SFJ6-A/SFJ609Q.Seq.d/
AGATAATTAACATATACAATTAAACATGGGTCGTATGCATTCAAACGGTAAAGGTATCAG
TGGTTCTTCATTACCATACAACAGAAAACCACATGCTTGGACTAAACCAACTGCCTCAGA
AGTCTGTGAAACTGTCTGCAAATTAGCCAAGAGAGGTTATACTCCATCCAAAATTGGTTC
ATCTTTAAGAGATTCATTAGGTGTAGCCCAAGTTAAAAACGTCACCGGTAGCAAAATCTT
ACGTATCTTAAAGGTTAACGGTCTCGCCCCAACCATCCCAGAAGATTTATACCATTTAAT
CAAAAAAGCCGTCACCATCAACAAACATTTACAAAGAGCCCGTAAAGATTACGATGGTAA
ATTCCATTTACGTTTAGTTGAATCTCGTATCCACAGATTAACTCGTCCATACAGAAAGAA
CGGTACTTTAGCTCCAAACTGGAAATACGAATCTAACAACGCTTCAACTTTAGTTGCTTA
AACACCCTCGTTTTAAAAAAATTTAAATAAAATAGGAGGTTTCGGGGTCTTATTAGTGAT
TTATCACTAATTTGTACTTTTTTTAACXXXXXXXXXX
sequence update 2001. 6. 1
Translated Amino Acid sequence
dn*HIQLNMGRMHSNGKGISGSSLPYNRKPHAWTKPTASEVCETVCKLAKRGYTPSKIGS
SLRDSLGVAQVKNVTGSKILRILKVNGLAPTIPEDLYHLIKKAVTINKHLQRARKDYDGK
FHLRLVESRIHRLTRPYRKNGTLAPNWKYESNNASTLVA*tpsf*knlnkiggfgvllvi
yh*fvlfl---


Translated Amino Acid sequence (All Frames)
Frame A:
r*ltytikhgsyafkr*ryqwffitiqqkttcld*tnclrsl*nclqisqerlysiqnwf
ifkrfircsps*krhr*qnltylkg*rsrpnhprrfipfnqksrhhqqtftksp*rlrw*
ipftfs*isypqinssiqkeryfsskleiri*qrfnfsclntlvlkkfk*nrrfrglisd
lslictff---


Frame B:
dn*HIQLNMGRMHSNGKGISGSSLPYNRKPHAWTKPTASEVCETVCKLAKRGYTPSKIGS
SLRDSLGVAQVKNVTGSKILRILKVNGLAPTIPEDLYHLIKKAVTINKHLQRARKDYDGK
FHLRLVESRIHRLTRPYRKNGTLAPNWKYESNNASTLVA*tpsf*knlnkiggfgvllvi
yh*fvlfl---


Frame C:
iiniyn*twvvciqtvkvsvvlhyhttenhmlglnqlpqksvklsan*previlhpklvh
l*eih*v*pklktspvaksyvs*rltvspqpsqkiyti*skkpspstniykepvkitmvn
siyv*lnlvstd*lvhtertvl*lqtgntnlttlql*llkhprfkki*ik*evsgsy**f
itnlyff*---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VFI206 (VFI206Q) /CSM/VF/VFI2-A/VFI206Q.Seq.d/ 1063 0.0
SFJ609 (SFJ609Q) /CSM/SF/SFJ6-A/SFJ609Q.Seq.d/ 1063 0.0
VSI643 (VSI643Q) /CSM/VS/VSI6-B/VSI643Q.Seq.d/ 1057 0.0
FC-083 (FC-083Q) /CSM/CG/CG-FC/FC-083Q.Seq.d/ 1055 0.0
FC-BI13 (FC-BI13Q) /CSM/FC/FC-BI/FC-BI13Q.Seq.d/ 1039 0.0
VHG639 (VHG639Q) /CSM/VH/VHG6-B/VHG639Q.Seq.d/ 1029 0.0
VHM465 (VHM465Q) /CSM/VH/VHM4-C/VHM465Q.Seq.d/ 954 0.0
FC-AD19 (FC-AD19Q) /CSM/FC/FC-AD/FC-AD19Q.Seq.d/ 906 0.0
FC-BE08 (FC-BE08Q) /CSM/FC/FC-BE/FC-BE08Q.Seq.d/ 896 0.0
FC-AY02 (FC-AY02Q) /CSM/FC/FC-AY/FC-AY02Q.Seq.d/ 694 0.0

own update 2002.10.11
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AX537062|AX537062.1 Sequence 663 from Patent WO02064766. 42 2e-07 4
AF508262|AF508262.1 Pyrocystis lunula cytoplasmic ribosomal protein S13 mRNA, complete cds. 32 5e-07 5
M58330|M58330.1 C.maltosa autonomously replicating sequence. 42 5e-07 3
X62673|X62673.1 M.domestica mRNA for ribosomal protein S13. 38 1e-06 4
AU283363|AU283363.1 Molgula tectiformis mRNA, clone:MT03B2H06R, 5' end. 56 1e-05 2
AU283420|AU283420.1 Molgula tectiformis mRNA, clone:MT03B2H06T, 3' end. 56 1e-05 2
CD492286|CD492286.1 DD3-37D Diff. display PCR-Script Amp lib. pg. 14-30 Haematobia irritans irritans cDNA similar to Ribosomal protein S13, mRNA sequence. 38 3e-05 4
CF587974|CF587974.1 USDA-FP_121100-062 Acyrthosiphon pisum, Pea Aphid Acyrthosiphon pisum cDNA clone WHAP-008_F07 5', mRNA sequence. 50 3e-04 2
CF587535|CF587535.1 USDA-FP_120500-088 Acyrthosiphon pisum, Pea Aphid Acyrthosiphon pisum cDNA clone WHAP-002_A12 5', mRNA sequence. 50 3e-04 2
CD036313|CD036313.1 mgmt015xA07f.b Mated culture Magnaporthe grisea cDNA clone mgmt015xA07 5', mRNA sequence. 40 6e-04 2
dna update 2004. 1. 6
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AB043974_1(AB043974|pid:none) Panax ginseng mRNA for cytoplasmic... 207 1e-52
BT051212_1(BT051212|pid:none) Medicago truncatula clone MTYF1_F2... 207 1e-52
DQ056438_1(DQ056438|pid:none) Lycopersicon esculentum cytoplasmi... 207 2e-52
DQ284485_1(DQ284485|pid:none) Solanum tuberosum clone 007G12 cyt... 207 2e-52
AM445443_1(AM445443|pid:none) Vitis vinifera contig VV78X073039.... 206 3e-52
(P59224) RecName: Full=40S ribosomal protein S13-2; &AB031739_1... 206 4e-52
(P59223) RecName: Full=40S ribosomal protein S13-1; &AF380636_1... 205 6e-52
CU633899_373(CU633899|pid:none) Podospora anserina genomic DNA c... 203 2e-51
AF378861_1(AF378861|pid:none) Arabidopsis thaliana AT3g60770/T4C... 203 2e-51
EF146546_1(EF146546|pid:none) Populus trichocarpa clone WS0119_C... 202 4e-51
protein update 2009. 5.27
PSORT

psg: 0.68 gvh: 0.27 alm: 0.50 top: 0.53 tms: 0.00 mit: 0.38 mip: 0.05
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: mitochondrial
32.0 %: nuclear
24.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: peroxisomal

>> prediction for SFJ609 is mit

5' end seq. ID SFJ609F
5' end seq.
>SFJ609F.Seq
AGATAATTAACATATACAATTAAACATGGGTCGTATGCATTCAAACGGTAAAGGTATCAG
TGGTTCTTCATTACCATACAACAGAAAACCACATGCTTGGACTAAACCAACTGCCTCAGA
AGTCTGTGAAACTGTCTGCAAATTAGCCAAGAGAGGTTATACTCCATCCAAAATTGGTTC
ATCTTTAAGAGATTCATTAGGTGTAGCCCAAGTTAAAAACGTCACCGGTAGCAAAATCTT
ACGTATCTTAAAGGTTAACGGTCTCGCCCCAACCATCCCAGAAGATTTATACCATTTAAT
CAAAAAAGCCGTCACCATCAACAAACATTTACAAAGAGCCCGTAAAGATTACGATGGTAA
ATTCCATTTACGTTTAGTTGAATCTCGTATCCACAGATTAACTCGTCCATACAGAAAGAA
CGGTACTTTAGCTCCAAACTGGAAATACGAATCTAACAACGCTTCAACTTTAGTTGCTTA
AACACCCTCGTTTTAAAAAAATTTAAATAAAATAGGAGGTTTCGGGGTCTTATTAGTGAT
TTATCACTAATTTGTACTTTTTTTAAC----------
Length of 5' end seq. 567
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -