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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFJ562
Library SF
(Link to library)
Clone ID SFJ562
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13863-1
Original site URL
Representative seq. ID SFJ562P
(Link to Original site)
Representative DNA sequence 
>SFJ562 (SFJ562Q) /CSM/SF/SFJ5-C/SFJ562Q.Seq.d/
ATTAATAGTAATTATTTTTTTTTCCTTCCCTCATTATTTTTTTTAAATAATAAATAAACA
TATACAATGATTGATTCAGATATAGAATTAAATAAAATAATAGTAGTACCATTAATATCA
AAAGATTCATTAGATATTAATGATGCAAAAAATTACTATGGAACCGAGTTATACCCAAAT
CAACCAATTCCAACCATAGTTTCAGCTCAATCTGAAGTAGATTCTTTAATTAATCAAACT
TCTGGTAATAATGATGAAGAAAGATTAGTTTTATTATTAAAACAACAACAACAAGAGGTA
GAAAAAGATAAAACATTTGATACAAATAAATATTTTAACGAATTATCAACAATTTTATTT
GGAAAGAATTTAATTCATTCTGAAGTAATTAGTTCAACACAAGATATAATGTTAAAATAT
TTAACATATACTCGTCAAGGATTAGTAATGATTGCAGACCAACAAACCAAAGGTAGAGGA
CGTGGTGTAAATAAATTCTTGTCTCCATTGGGATGTTTGTTAATGTCATTCAAATGTAAA
CAAACTGATGGTAATAAATTACCATTCCTTCAATATTTGGCTGGTATGGCAATGGTCGAA
GCAATTCACTCTTTCCCAAGTGCATCTGATTTAAXXXXXXXXXXTCTATAGTAATNAACC
AGGTATGAAAGTTGGTGGTGTCCTCTGTGAATCNAATTATNTTAACAATGAATTTGATGT
TGTCATTGGNGTTGGNGTTAATCTTTCAAATTCAAATAATCCATCAACAACTATAAATCA
ATTAATTCAAAANAAAAAATATGGATTTTCATCATCATCATTGGCAACAAGNACTGATAT
TCCNATTTATATTAGTANANAANAATTGGTTTCAAAATTNTTTAACAAATTCGAACCAAT
GTTTATGGAATTTACAAAANATGGCTTTAANGCAGATCTTGAAAATANANACNCTGACTT
ATGGATGCATACAAATCNAATTGTAAAATTTAAANAAANAGATAACCNTCATGTTAAAAT
CNTTGGNATTTCTGANAGTGGNTTCCTTAAAGCTATTGAATGTGATGCTGATGGTAANAC
ATCTTCTGACTCTGAAACCGTTGAGCTTCNCCCAG
sequence update 2001. 6. 1
Translated Amino Acid sequence 
insnyffflpslfflnnk*TYTMIDSDIELNKIIVVPLISKDSLDINDAKNYYGTELYPN
QPIPTIVSAQSEVDSLINQTSGNNDEERLVLLLKQQQQEVEKDKTFDTNKYFNELSTILF
GKNLIHSEVISSTQDIMLKYLTYTRQGLVMIADQQTKGRGRGVNKFLSPLGCLLMSFKCK
QTDGNKLPFLQYLAGMAMVEAIHSFPSASDL---

---YSNXPGMKVGGVLCESNYXNNEFDVVIGVGVNLSNSNNPSTTINQLIQXKKYGFSSS
SLATXTDIPIYISXXXLVSKXFNKFEPMFMEFTKXGFXADLENXXXDLWMHTNXIVKFKX
XDNXHVKIXGISXSGFLKAIECDADGXTSSDSETVELXP
Translated Amino Acid sequence (All Frames) 
Frame A:
insnyffflpslfflnnk*TYTMIDSDIELNKIIVVPLISKDSLDINDAKNYYGTELYPN
QPIPTIVSAQSEVDSLINQTSGNNDEERLVLLLKQQQQEVEKDKTFDTNKYFNELSTILF
GKNLIHSEVISSTQDIMLKYLTYTRQGLVMIADQQTKGRGRGVNKFLSPLGCLLMSFKCK
QTDGNKLPFLQYLAGMAMVEAIHSFPSASDL---

---sivxnqv*klvvssvnxixltmnlmlslxlxlifqiqiihqql*in*fkxknmdfhh
hhwqqxlifxfilvxxnwfqnxltnsnqclwnlqxmalxqilkixtltygciqixl*nlx
kxitxmlkslxflxvxslkllnvmlmvxhlltlkplsfxq

Frame B:
liviiffsfphyff*iinkhiq*liqi*n*ik***yh*yqkih*ilmmqkitmepsytqi
nqfqp*fqlnlk*il*likllvimmkkd*fyy*nnnnkr*kkikhliqiniltnyqqfyl
eri*filk*lvqhki*c*ni*hilvkd***lqtnkpkvedvv*insclhwdvc*chsnvn
klmvinyhsfniwlvwqwskqftlsqvhli*---

---l**xtryeswwcpl*ixlx*q*i*cchwxwx*sfkfk*sinnyksinskxkiwifii
iignkx*ysxly*xxxigfkix*qirtnvygiykxwl*xrs*kxxx*lmdayksncki*x
xr*psc*nxwxf*xwxp*sy*m*c*w*xif*l*nr*asp

Frame C:
***lfffpsliiffk**iniynd*fryrik*nnsstinikrfiry**ckkllwnrvipks
tnsnhsfssi*srffn*snfw****rkisfiikttttrgrkr*ni*yk*if*riinnfiw
kefnsf*sn*fntrynvkifniyssrisndcrptnqr*rtwck*ilvsigmfvnviqm*t
n*w**itipsifgwygngrsnslfpkci*f---

---YSNXPGMKVGGVLCESNYXNNEFDVVIGVGVNLSNSNNPSTTINQLIQXKKYGFSSS
SLATXTDIPIYISXXXLVSKXFNKFEPMFMEFTKXGFXADLENXXXDLWMHTNXIVKFKX
XDNXHVKIXGISXSGFLKAIECDADGXTSSDSETVELXP
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFJ562 (SFJ562Q) /CSM/SF/SFJ5-C/SFJ562Q.Seq.d/                       1752   0.0
SLA592 (SLA592Q) /CSM/SL/SLA5-D/SLA592Q.Seq.d/                       1055   0.0
SFD294 (SFD294Q) /CSM/SF/SFD2-D/SFD294Q.Seq.d/                       1055   0.0
AFI685 (AFI685Q) /CSM/AF/AFI6-D/AFI685Q.Seq.d/                       1053   0.0
AFL119 (AFL119Q) /CSM/AF/AFL1-A/AFL119Q.Seq.d/                        993   0.0
AFJ338 (AFJ338Q) /CSM/AF/AFJ3-B/AFJ338Q.Seq.d/                        896   0.0
AFL454 (AFL454Q) /CSM/AF/AFL4-C/AFL454Q.Seq.d/                        894   0.0
AFM643 (AFM643Q) /CSM/AF/AFM6-B/AFM643Q.Seq.d/                        864   0.0
AFH395 (AFH395Q) /CSM/AF/AFH3-D/AFH395Q.Seq.d/                        805   0.0
AFL194 (AFL194Q) /CSM/AF/AFL1-D/AFL194Q.Seq.d/                        735   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    46   1e-09  13
AC116920|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    36   3e-09  15
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    36   9e-09  14
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    42   6e-08  16
AC116960|AC116960.2 Dictyostelium discoideum chromosome 2 map complement(1004496-821614) strain AX4, complete sequence.    42   1e-06  15
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    32   1e-05  17
AE003548|AE003548.3 Drosophila melanogaster chromosome 3L, section 37 of 83 of the complete sequence.    40   4e-05  10
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    34   7e-05  16
AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    38   8e-05  13
AC115607|AC115607.2 Dictyostelium discoideum chromosome 2 map 4559693-4624405 strain AX4, complete sequence.    32   8e-05  10
dna update 2004. 1. 6
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AP008208_425(AP008208|pid:none) Oryza sativa (japonica cultivar-...    76   2e-25
AC006053_17(AC006053|pid:none) Arabidopsis thaliana chromosome 2...    75   4e-25
G84651(G84651)biotin holocarboxylase synthetase [imported] - Ara...    75   4e-25
CP000582_324(CP000582|pid:none) Ostreococcus lucimarinus CCE9901...    76   4e-24
AC007505_1(AC007505|pid:none) Arabidopsis thaliana chromosome I ...    79   1e-22
AP005804_18(AP005804|pid:none) Oryza sativa Japonica Group genom...    64   9e-22
(P50747) RecName: Full=Biotin--protein ligase;          EC=6.3.4...    76   6e-21
(Q920N2) RecName: Full=Biotin--protein ligase;          EC=6.3.4...    75   3e-20
AK168925_1(AK168925|pid:none) Mus musculus 16 days embryo kidney...    75   3e-20
AF414940_1(AF414940|pid:none) Arabidopsis thaliana holocarboxyla...    62   4e-20
protein update 2009. 5.27
PSORT 

 psg: 0.75  gvh: 0.35  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 32.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vesicles of secretory system

>> prediction for SFJ562 is cyt
5' end seq. ID SFJ562F
5' end seq. 
>SFJ562F.Seq
ATTAATAGTAATTATTTTTTTTTCCTTCCCTCATTATTTTTTTTAAATAATAAATAAACA
TATACAATGATTGATTCAGATATAGAATTAAATAAAATAATAGTAGTACCATTAATATCA
AAAGATTCATTAGATATTAATGATGCAAAAAATTACTATGGAACCGAGTTATACCCAAAT
CAACCAATTCCAACCATAGTTTCAGCTCAATCTGAAGTAGATTCTTTAATTAATCAAACT
TCTGGTAATAATGATGAAGAAAGATTAGTTTTATTATTAAAACAACAACAACAAGAGGTA
GAAAAAGATAAAACATTTGATACAAATAAATATTTTAACGAATTATCAACAATTTTATTT
GGAAAGAATTTAATTCATTCTGAAGTAATTAGTTCAACACAAGATATAATGTTAAAATAT
TTAACATATACTCGTCAAGGATTAGTAATGATTGCAGACCAACAAACCAAAGGTAGAGGA
CGTGGTGTAAATAAATTCTTGTCTCCATTGGGATGTTTGTTAATGTCATTCAAATGTAAA
CAAACTGATGGTAATAAATTACCATTCCTTCAATATTTGGCTGGTATGGCAATGGTCGAA
GCAATTCACTCTTTCCCAAGTGCATCTGATTTAA----------
Length of 5' end seq. 634
3' end seq. ID SFJ562Z
3' end seq. 
>SFJ562Z.Seq
----------TCTATAGTAATNAACCAGGTATGAAAGTTGGTGGTGTCCTCTGTGAATCN
AATTATNTTAACAATGAATTTGATGTTGTCATTGGNGTTGGNGTTAATCTTTCAAATTCA
AATAATCCATCAACAACTATAAATCAATTAATTCAAAANAAAAAATATGGATTTTCATCA
TCATCATTGGCAACAAGNACTGATATTCCNATTTATATTAGTANANAANAATTGGTTTCA
AAATTNTTTAACAAATTCGAACCAATGTTTATGGAATTTACAAAANATGGCTTTAANGCA
GATCTTGAAAATANANACNCTGACTTATGGATGCATACAAATCNAATTGTAAAATTTAAA
NAAANAGATAACCNTCATGTTAAAATCNTTGGNATTTCTGANAGTGGNTTCCTTAAAGCT
ATTGAATGTGATGCTGATGGTAANACATCTTCTGACTCTGAAACCGTTGAGCTTCNCCCA
G
Length of 3' end seq. 471
Connected seq. ID SFJ562P
Connected seq. 
>SFJ562P.Seq
ATTAATAGTAATTATTTTTTTTTCCTTCCCTCATTATTTTTTTTAAATAATAAATAAACA
TATACAATGATTGATTCAGATATAGAATTAAATAAAATAATAGTAGTACCATTAATATCA
AAAGATTCATTAGATATTAATGATGCAAAAAATTACTATGGAACCGAGTTATACCCAAAT
CAACCAATTCCAACCATAGTTTCAGCTCAATCTGAAGTAGATTCTTTAATTAATCAAACT
TCTGGTAATAATGATGAAGAAAGATTAGTTTTATTATTAAAACAACAACAACAAGAGGTA
GAAAAAGATAAAACATTTGATACAAATAAATATTTTAACGAATTATCAACAATTTTATTT
GGAAAGAATTTAATTCATTCTGAAGTAATTAGTTCAACACAAGATATAATGTTAAAATAT
TTAACATATACTCGTCAAGGATTAGTAATGATTGCAGACCAACAAACCAAAGGTAGAGGA
CGTGGTGTAAATAAATTCTTGTCTCCATTGGGATGTTTGTTAATGTCATTCAAATGTAAA
CAAACTGATGGTAATAAATTACCATTCCTTCAATATTTGGCTGGTATGGCAATGGTCGAA
GCAATTCACTCTTTCCCAAGTGCATCTGATTTAA----------TCTATAGTAATNAACC
AGGTATGAAAGTTGGTGGTGTCCTCTGTGAATCNAATTATNTTAACAATGAATTTGATGT
TGTCATTGGNGTTGGNGTTAATCTTTCAAATTCAAATAATCCATCAACAACTATAAATCA
ATTAATTCAAAANAAAAAATATGGATTTTCATCATCATCATTGGCAACAAGNACTGATAT
TCCNATTTATATTAGTANANAANAATTGGTTTCAAAATTNTTTAACAAATTCGAACCAAT
GTTTATGGAATTTACAAAANATGGCTTTAANGCAGATCTTGAAAATANANACNCTGACTT
ATGGATGCATACAAATCNAATTGTAAAATTTAAANAAANAGATAACCNTCATGTTAAAAT
CNTTGGNATTTCTGANAGTGGNTTCCTTAAAGCTATTGAATGTGATGCTGATGGTAANAC
ATCTTCTGACTCTGAAACCGTTGAGCTTCNCCCAG
Length of connected seq. 1105
Full length Seq ID -
Full length Seq. -
Length of full length seq. -