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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFJ529
Library SF
(Link to library)
Clone ID SFJ529
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16097-1
Original site URL
Representative seq. ID SFJ529Z
(Link to Original site)
Representative DNA sequence 
>SFJ529 (SFJ529Q) /CSM/SF/SFJ5-B/SFJ529Q.Seq.d/
XXXXXXXXXXAGATTTGAAACCACAAAATTTATTATGTGCAGGTGAAGAAGGTGATGATA
TTAGGGTAGCAGATTTTGGATTAAGTAAAATATTTGGAGATGGTGATTATTTAGNNACAT
GTTGTGGTTCACCAGAATATGTAGCNCCAGAAGTTTTAGAATGTAAACCATACGATAAAG
CATGTGANTTATGGAGTGTTGGTGTTATCNCNTATGAGTTATTGACTGGTNGTTTNCCAT
NTNGGGATAAGAATAATGCTGTNCTTTNTGANAGAAGCAGAAATGTAGGCTTATGGTT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
---DLKPQNLLCAGEEGDDIRVADFGLSKIFGDGDYLXTCCGSPEYVAPEVLECKPYDKA
CXLWSVGVIXYELLTGXXPXXDKNNAVLXXRSRNVGLW
Translated Amino Acid sequence (All Frames) 
Frame A:
---DLKPQNLLCAGEEGDDIRVADFGLSKIFGDGDYLXTCCGSPEYVAPEVLECKPYDKA
CXLWSVGVIXYELLTGXXPXXDKNNAVLXXRSRNVGLW


Frame B:
---i*nhkiyyvqvkkvmilg*qild*vkylemvii*xhvvvhqnm*xqkf*nvnhtikh
vxygvlvlsxmsy*lvvxhxgirimlxfxxeaem*ayg


Frame C:
---fettkfimcr*rr**y*gsrfwik*niwrw*lfxxmlwftricsxrsfrm*tir*sm
*xmecwcyxx*vidwxfxxxg*e*ccxx*xkqkcrlmv
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFJ529 (SFJ529Q) /CSM/SF/SFJ5-B/SFJ529Q.Seq.d/                        494   e-139
SFL103 (SFL103Q) /CSM/SF/SFL1-A/SFL103Q.Seq.d/                        448   e-125
SSE545 (SSE545Q) /CSM/SS/SSE5-B/SSE545Q.Seq.d/                        434   e-121
SSJ779 (SSJ779Q) /CSM/SS/SSJ7-D/SSJ779Q.Seq.d/                        412   e-114
CFB454 (CFB454Q) /CSM/CF/CFB4-C/CFB454Q.Seq.d/                        412   e-114
AFN323 (AFN323Q) /CSM/AF/AFN3-A/AFN323Q.Seq.d/                         58   8e-08
VFJ716 (VFJ716Q) /CSM/VF/VFJ7-A/VFJ716Q.Seq.d/                         50   2e-05
VFJ379 (VFJ379Q) /CSM/VF/VFJ3-D/VFJ379Q.Seq.d/                         50   2e-05
VFG501 (VFG501Q) /CSM/VF/VFG5-A/VFG501Q.Seq.d/                         50   2e-05
VFG381 (VFG381Q) /CSM/VF/VFG3-D/VFG381Q.Seq.d/                         50   2e-05
own update 2009. 4. 4
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    46   2e-13  3
BH137166|BH137166.1 ENTNR83TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    52   7e-12  3
AZ672839|AZ672839.1 ENTIX25TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    52   1e-11  3
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    50   2e-06  3
X80034|X80034.1 C.albicans CDC28 gene.                             38   0.001  2
AR037044|AR037044.1 Sequence 3 from patent US 5801015.             38   0.001  2
U40405|U40405.1 Candida albicans cdc2/CDC28/CDK1 homolog mRNA, complete cds.    38   0.001  2
AX488906|AX488906.1 Sequence 6206 from Patent WO02053728.          38   0.001  2
CD574962|CD574962.1 UCRPT01_02bd07_b1 Poncirus trifoliata CTV-challenged cDNA library - AGI Poncirus trifoliata cDNA clone UCRPT01_02bd07, mRNA sequence.    42   0.004  2
CF835953|CF835953.1 UCRCS03_02C23_f Washington Navel Orange Shoot Meristem cDNA Library Citrus sinensis cDNA clone CS_PEa02C23, mRNA sequence.    42   0.004  2
dna update 2004. 1. 6
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116982_54(AC116982|pid:none) Dictyostelium discoideum chromoso...   105   5e-22
(Q869W6) RecName: Full=Probable calcium/calmodulin-dependent ser...    97   2e-19
AY606040_1(AY606040|pid:none) Oncorhynchus mykiss calcium/calmod...    95   8e-19
BT045374_1(BT045374|pid:none) Salmo salar clone ssal-rgf-519-258...    95   8e-19
BC041721_1(BC041721|pid:none) Xenopus laevis calcium/calmodulin-...    94   2e-18
BC110966_1(BC110966|pid:none) Xenopus laevis calcium/calmodulin-...    94   2e-18
AK052401_1(AK052401|pid:none) Mus musculus 13 days embryo lung c...    93   2e-18
(Q8IU85) RecName: Full=Calcium/calmodulin-dependent protein kina...    93   2e-18
AY335686_1(AY335686|pid:none) Synthetic construct Homo sapiens C...    93   2e-18
(Q8BW96) RecName: Full=Calcium/calmodulin-dependent protein kina...    93   2e-18
protein update 2009. 5.27
PSORT 

 psg: 0.77  gvh: 0.46  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.07  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: vesicles of secretory system
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: vacuolar

>> prediction for SFJ529 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SFJ529Z
3' end seq. 
>SFJ529Z.Seq
----------AGATTTGAAACCACAAAATTTATTATGTGCAGGTGAAGAAGGTGATGATA
TTAGGGTAGCAGATTTTGGATTAAGTAAAATATTTGGAGATGGTGATTATTTAGNNACAT
GTTGTGGTTCACCAGAATATGTAGCNCCAGAAGTTTTAGAATGTAAACCATACGATAAAG
CATGTGANTTATGGAGTGTTGGTGTTATCNCNTATGAGTTATTGACTGGTNGTTTNCCAT
NTNGGGATAAGAATAATGCTGTNCTTTNTGANAGAAGCAGAAATGTAGGCTTATGGTT
Length of 3' end seq. 288
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -