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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFJ471
Library SF
(Link to library)
Clone ID SFJ471
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U09091-1
Original site URL
Representative seq. ID SFJ471P
(Link to Original site)
Representative DNA sequence 
>SFJ471 (SFJ471Q) /CSM/SF/SFJ4-C/SFJ471Q.Seq.d/
ATTAATAAATTTATTACAACGAATATTTTTGTGAGACTTAATTTGGTATTAATTTGTAAA
TATATAAAAAAAACCCCTCTCTCCCCCTCTCTCAAAAAAAAAATATAAAAAAAAATTATA
ATAAATCCCCACAAANGTAGTAATAATAAAAAAAAAANCAANTAANGAAAAANGATAANG
AAANTTTANTNTNTNTNTNTAANGAANGAAANGTCNTTAAAAAGXXXXXXXXXXTCCCNA
TNTANACTACCNCTGGNCAAANTAAAACTGGTTTNGCNCCNANTGCAANCGGNTTCCCCT
TANGNTTCCNTTGNTTCTTGGGNGGNTCANNCTCTGGNGGNGCNTTCAANCCNGCTAAAN
NTTTCGGGACNGCNTTANTTGGNAANNATTGGACNCGNCNTTGGANGNATTGGAAANCNG
NCCTTTTAGGGGCNGGNTTANCNGGNTTTGCCCNAAAANTCNTTTCNNCNACNCANAAAT
AAATTTCNAAAAAANAAAAAAAAANAATTCCAANAAAAAAAATAAATAATAATAATAATA
ATAAAAACTAAATAA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
**iyyneyfcet*fginl*iykknpslplsqkknikknynkspqx****KKXQXXKXDXE
XLXXXXXEXXVXKK---

---PXXTTXGQXKTGXAPXAXGFPLXFXXFLGGSXSGGAFXPAKXFGTALXGXXWTRXWX
XWKXXLLGAGLXGFAXKXXSXTXK*iskkxkkxipxkkinnnnnnkn*i
Translated Amino Acid sequence (All Frames) 
Frame A:
inkfittnifvrlnlvlickyikktplspslkkki*kkiiinphkxsnnkkkxx*xkxix
kxxxxxxxxexslk---

---sxxxlplxkxklvxxxxqxxspxxsxxswxxxxlxxxsxxlxxsgxxxlxxigxxxg
xigxxxf*gxxxxxlpxxsfxxxxnkfxkxkkkxfqxkk*iiiiiiktk*

Frame B:
linllqrifl*dliwy*fvni*kkplspplskkkykkkl**iptxvviikkkxxxekx*x
xfxxxx*xxkxx*k---

---pxxxyxwxx*nwfxxxcxrxplxxplxlgxxxlwxxxqxx*xfrdxxxwxxldxxlx
xlexxpfrgxxxxxcpkxxfxxxxinfxkxkkxnsxkknk******kln

Frame C:
**iyyneyfcet*fginl*iykknpslplsqkknikknynkspqx****KKXQXXKXDXE
XLXXXXXEXXVXKK---

---PXXTTXGQXKTGXAPXAXGFPLXFXXFLGGSXSGGAFXPAKXFGTALXGXXWTRXWX
XWKXXLLGAGLXGFAXKXXSXTXK*iskkxkkxipxkkinnnnnnkn*i
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFJ471 (SFJ471Q) /CSM/SF/SFJ4-C/SFJ471Q.Seq.d/                        180   1e-44
SLG243 (SLG243Q) /CSM/SL/SLG2-B/SLG243Q.Seq.d/                        105   7e-22
SLI382 (SLI382Q) /CSM/SL/SLI3-D/SLI382Q.Seq.d/                         38   0.14
CHH449 (CHH449Q) /CSM/CH/CHH4-C/CHH449Q.Seq.d/                         36   0.54
VSC242 (VSC242Q) /CSM/VS/VSC2-B/VSC242Q.Seq.d/                         32   8.5
VFB443 (VFB443Q) /CSM/VF/VFB4-B/VFB443Q.Seq.d/                         32   8.5
SSH344 (SSH344Q) /CSM/SS/SSH3-B/SSH344Q.Seq.d/                         32   8.5
SSH101 (SSH101Q) /CSM/SS/SSH1-A/SSH101Q.Seq.d/                         32   8.5
SSF555 (SSF555Q) /CSM/SS/SSF5-C/SSF555Q.Seq.d/                         32   8.5
SSF524 (SSF524Q) /CSM/SS/SSF5-A/SSF524Q.Seq.d/                         32   8.5
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BM938698|BM938698.1 UI-M-CG0p-bfc-c-11-0-UI.r1 NIH_BMAP_Ret4_S2 Mus musculus cDNA cloneUI-M-CG0p-bfc-c-11-0-UI 5', mRNA sequence.    36   0.054  2
AL772349|AL772349.5 Mouse DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP23-466A17.    48   0.13   1
AP000609|AP000609.5 Homo sapiens genomic DNA, chromosome 11q, clone:CMB9-92L10.    46   0.51   1
AC098491|AC098491.5 Rattus norvegicus clone CH230-16I9, WORKING DRAFT SEQUENCE, 7 unordered pieces.    38   0.85   2
AI356230|AI356230.1 qy65f02.x1 NCI_CGAP_Brn25 Homo sapiens cDNA clone IMAGE:2016891 3', mRNA sequence.    38   2.0    2
CC256470|CC256470.1 CH261-49E15_RM1.1 CH261 Gallus gallus genomic clone CH261-49E15, DNA sequence.    44   2.0    1
AI754284|AI754284.1 cr22h04.x1 Human bone marrow stromal cells Homo sapiens cDNA clone HBMSC_cr22h04 3', mRNA sequence.    38   2.0    2
AC091395|AC091395.3 Mus musculus chromosome 6 clone RP23-288L22 strain C57BL6/J, WORKING DRAFT SEQUENCE, 10 ordered pieces.    38   2.3    2
CB963861|CB963861.1 AGENCOURT_13462385 NIH_MGC_187 Homo sapiens cDNA clone IMAGE:30318607 5', mRNA sequence.    38   2.5    2
AC113496|AC113496.3 Mus musculus clone RP23-364G24, WORKING DRAFT SEQUENCE, 29 unordered pieces.    40   2.6    2
dna update 2004. 1. 6
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB458833_1(AB458833|pid:none) Bombyx mori aqp mRNA for aquaporin...    34   2.2
protein update 2009. 5.27
PSORT 

 psg: 0.70  gvh: 0.65  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 24.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for SFJ471 is cyt
5' end seq. ID SFJ471F
5' end seq. 
>SFJ471F.Seq
ATTAATAAATTTATTACAACGAATATTTTTGTGAGACTTAATTTGGTATTAATTTGTAAA
TATATAAAAAAAACCCCTCTCTCCCCCTCTCTCAAAAAAAAAATATAAAAAAAAATTATA
ATAAATCCCCACAAANGTAGTAATAATAAAAAAAAAANCAANTAANGAAAAANGATAANG
AAANTTTANTNTNTNTNTNTAANGAANGAAANGTCNTTAAAAAG----------
Length of 5' end seq. 224
3' end seq. ID SFJ471Z
3' end seq. 
>SFJ471Z.Seq
----------TCCCNATNTANACTACCNCTGGNCAAANTAAAACTGGTTTNGCNCCNANT
GCAANCGGNTTCCCCTTANGNTTCCNTTGNTTCTTGGGNGGNTCANNCTCTGGNGGNGCN
TTCAANCCNGCTAAANNTTTCGGGACNGCNTTANTTGGNAANNATTGGACNCGNCNTTGG
ANGNATTGGAAANCNGNCCTTTTAGGGGCNGGNTTANCNGGNTTTGCCCNAAAANTCNTT
TCNNCNACNCANAAATAAATTTCNAAAAAANAAAAAAAAANAATTCCAANAAAAAAAATA
AATAATAATAATAATAATAAAAACTAAATAA
Length of 3' end seq. 321
Connected seq. ID SFJ471P
Connected seq. 
>SFJ471P.Seq
ATTAATAAATTTATTACAACGAATATTTTTGTGAGACTTAATTTGGTATTAATTTGTAAA
TATATAAAAAAAACCCCTCTCTCCCCCTCTCTCAAAAAAAAAATATAAAAAAAAATTATA
ATAAATCCCCACAAANGTAGTAATAATAAAAAAAAAANCAANTAANGAAAAANGATAANG
AAANTTTANTNTNTNTNTNTAANGAANGAAANGTCNTTAAAAAG----------TCCCNA
TNTANACTACCNCTGGNCAAANTAAAACTGGTTTNGCNCCNANTGCAANCGGNTTCCCCT
TANGNTTCCNTTGNTTCTTGGGNGGNTCANNCTCTGGNGGNGCNTTCAANCCNGCTAAAN
NTTTCGGGACNGCNTTANTTGGNAANNATTGGACNCGNCNTTGGANGNATTGGAAANCNG
NCCTTTTAGGGGCNGGNTTANCNGGNTTTGCCCNAAAANTCNTTTCNNCNACNCANAAAT
AAATTTCNAAAAAANAAAAAAAAANAATTCCAANAAAAAAAATAAATAATAATAATAATA
ATAAAAACTAAATAA
Length of connected seq. 545
Full length Seq ID -
Full length Seq. -
Length of full length seq. -