SFJ415 [Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview]

SFJ415
Library	SF (Link to library)
Clone ID	SFJ415 (Link to dictyBase)
Atlas ID	-
NBRP ID	-
dictyBase ID	-
Link to Contig	Contig-U16463-1
Original site URL	http://dictycdb.biol.tsukuba.ac.jp/CSM/SF/SFJ4-A/SFJ415Q.Seq.d/
Representative seq. ID	SFJ415P (Link to Original site)
Representative DNA sequence	>SFJ415 (SFJ415Q) /CSM/SF/SFJ4-A/SFJ415Q.Seq.d/ GGATATATTTTATTTGGGAAAAATAAATAAATAAATAAATAAATATGTCAGCTCCAGTTT TAACCACCAGTAGTGGTTCACCAATTGATAACAATTTAAACTCAATGACCGCAGGTGTTA ATGGTCCAATTTTAATTCAAGATTTCACTTTAATTGATAAACTTGCTCATTTCGATCGTG AACGTATCCCAGAACGTGTTGTACATGCTAAAGGTGCTGGTGCCCATGGTTATTTCGAAG TTACCTCAAGTGATGTACCAAAATGGTGTAAAGCTAAATTCTTAAATAAAGTTGGTAAGA GAACACCAATCTTCACCCGTTTCTCTACTGTTGGTGGTGAAAAAGGTTCATCCGATTCTG AAAGAGATCCAAGAGGTTTCGCTGTCAAATTTTATACTGAAGAAGGTAACTTTGATATGG TCGGTAATAATACTCCAGTTTTCTTTATTCGTGATCCATCAAAATTCCCAGATTTCATTC ATACACAAAAACGTAATCCACAAACAAATTGTAAAGATCCAAATATGTTTTGGGATTTTT TAGGTCAAACACCAGAATCAACACATCAAGTATCAATTTTATTCTCTGATTAGAGGTACA CCAAAATCATATCGTCATATGCCATGGTTTCTCATCACAXXXXXXXXXXGTTTCAATCCA TTCGATGTAACAAAGATTTGGTCACACAAAGACTATCCATTAATTCAAATTGGTCGTATG GTTTTGAATCGTAATCCAGAGAATTACTTTGCTGAAGTTGAACAAGCTGCCTTCTCACCA TCCCACATGGTTCCAGGTATTGAACCATCACCAGATAAGATGTTACAAGGTCGTCTCTTC TCTTATCCAGATACTCATCGTCATCGTTTAGGTGTAAACTATCAACAAATCCCAGTCAAT TGTCCATTCGCCGTAAAGGGTGGTGTTAAAAACTACCAACGTGATGGTTTCATGGCTGTC AATGGTAATGGTGGTAAAGGTCCAAACTATCAACCAAACTCTTTCGGTGGTCCAGAGCCA CATCCAGAATTTGCTCAACATAAATTTGACGTCTCTGGTTTCGCTGCTCGTCAACCATAC AATCATCCAAATGACGACTTTGTTCAACCAGGTGATTTATATAGACTCATGTCTGAAGAT GCCAAATCTCGTTTCGTCTCTAATTTAGTCGGTCACATGTCCGGTGTCACCATCAAAGAA ATTCAAGTTCGTGCCGTTTCAAACTTTTACAAGGCTGACAAAGATTTAGGTGCTCGTTTA TGTAAGGGTCTTGGTATTGATGTTAATGATGTCATCAAATTCGCTGCTAGATCAAACTGT AAATCAATATATTAAAAATAAAAAAAAA
sequence update	2001. 6. 1
Translated Amino Acid sequence	gyilfgknkinkicqlqfppvvvhqlititqpqvlmvqffkisllinllisiv nvsqnvlymlkvlvpmvisklpqvmyqngvklnsiklvrehqsspvslllvvkkvhpil keiqevslsnfilkkvtliwsviilqfslfvihqnsqisfihknvihkqivkiqicfgif VKHQNQHIKYQFYSLIRGTPKSYRHMPWFLIT--- ---FNPFDVTKIWSHKDYPLIQIGRMVLNRNPENYFAEVEQAAFSPSHMVPGIEPSPDKM LQGRLFSYPDTHRHRLGVNYQQIPVNCPFAVKGGVKNYQRDGFMAVNGNGGKGPNYQPNS FGGPEPHPEFAQHKFDVSGFAARQPYNHPNDDFVQPGDLYRLMSEDAKSRFVSNLVGHMS GVTIKEIQVRAVSNFYKADKDLGARLCKGLGIDVNDVIKFAARSNCKSIYk*kk
Translated Amino Acid sequence (All Frames)	Frame A: gyilfgknkinkicqlqfppvvvhqlititqpqvlmvqffkisllinllisiv nvsqnvlymlkvlvpmvisklpqvmyqngvklnsiklvrehqsspvslllvvkkvhpil keiqevslsnfilkkvtliwsviilqfslfvihqnsqisfihknvihkqivkiqicfgif VKHQNQHIKYQFYSLIRGTPKSYRHMPWFLIT--- ---vsihsmqrfghtktihfklvvwfiviqritllklnklpshhptwfqvlnhhqir cykvvssliqilivivvtinksqsivhsprvvlkttnvmvswlsmvmvvkvqtinqt lsvvqshiqnllninltslvsllvnhtiiqmttlfnqviyidsclkmpnlvsslisvtc pvspskkfkfvpfqtftrltkivlvyvrvlvlmlmmssnslldqtvnqyiknkkk Frame B: difylgkinkinkyvsssfnhqwftnqfklndrrcwsnfnsrfhfn*tcsfrs typrtcctcrcwcpwlfrsylkctkmvsilkswentnlhpflycwwkrfirf krskrfrcqilyrrlygryssflyssikiprfhsytktstnklrskyvlgff rsntrintssinfillevhqnhivichgfss--- ---fqsircnkdlvtqrlsinsnwsygfessrellcstsclltiphgsrytitrd vtrsslllsryssssfrcklstnpsqlsirrkgwcklptwfhgcqwwwrsklstkl frwsratsricstirlwfrcsstiqsskrlcstrfithvrcqisfrlfsrshv rchhqrnssscrfkllqgqrfrcsfmgswyc*chqirciklinilkikk Frame C: iyfiwekinkinmsapvlttssgspidnnlnsmtagvngpiliqdftlidklahfdre ripervvhakgagahgyfevtssdvpkwckakflnkvgkrtpiftrfstvggekgssdse rdprgfavkfyteegnfdmvgnntpvffirdpskfpdfihtqkrnpqtnckdpnmfwdfl gqtpesthqvsilfsdrytkiissyamvshh--- ---FNPFDVTKIWSHKDYPLIQIGRMVLNRNPENYFAEVEQAAFSPSHMVPGIEPSPDKM LQGRLFSYPDTHRHRLGVNYQQIPVNCPFAVKGGVKNYQRDGFMAVNGNGGKGPNYQPNS FGGPEPHPEFAQHKFDVSGFAARQPYNHPNDDFVQPGDLYRLMSEDAKSRFVSNLVGHMS GVTIKEIQVRAVSNFYKADKDLGARLCKGLGIDVNDVIKFAARSNCKSIYkkk
Homology vs CSM-cDNA	Score E Sequences producing significant alignments: (bits) Value SFJ415 (SFJ415Q) /CSM/SF/SFJ4-A/SFJ415Q.Seq.d/ 2494 0.0 AFE230 (AFE230Q) /CSM/AF/AFE2-B/AFE230Q.Seq.d/ 1348 0.0 SFK640 (SFK640Q) /CSM/SF/SFK6-B/SFK640Q.Seq.d/ 1342 0.0 SFJ685 (SFJ685Q) /CSM/SF/SFJ6-D/SFJ685Q.Seq.d/ 1342 0.0 FC-142 (FC-142Q) /CSM/CG/CG-FC/FC-142Q.Seq.d/ 1342 0.0 CFC537 (CFC537Q) /CSM/CF/CFC5-B/CFC537Q.Seq.d/ 1342 0.0 AFN393 (AFN393Q) /CSM/AF/AFN3-D/AFN393Q.Seq.d/ 1342 0.0 AFN369 (AFN369Q) /CSM/AF/AFN3-C/AFN369Q.Seq.d/ 1342 0.0 AFN135 (AFN135Q) /CSM/AF/AFN1-B/AFN135Q.Seq.d/ 1342 0.0 AFM893 (AFM893Q) /CSM/AF/AFM8-D/AFM893Q.Seq.d/ 1342 0.0
own update	2009. 4. 4
Homology vs DNA	Score E Sequences producing significant alignments: (bits) Value N AF090443\|AF090443.1 Dictyostelium discoideum catalase (cat) mRNA, complete cds. 1326 0.0 3 AC116986\|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, * SEQUENCING IN PROGRESS *, 1 ordered piece. 1326 0.0 15 AB064338\|AB064338.1 Candida boidinii CTA1 gene for peroxisomal catalase, complete cds. 111 1e-64 7 E65314\|E65314.1 Novel catalase, gene of said catalase and composition containing said catalase, and process for preparing catalase using the genetic engineering technology. 84 3e-32 4 AP004595\|AP004595.1 Oceanobacillus iheyensis genomic DNA, section 3/13. 72 2e-31 9 AX536932\|AX536932.1 Sequence 533 from Patent WO02064766. 101 6e-29 3 AR375090\|AR375090.1 Sequence 96 from patent US 6605709. 76 6e-28 3 AJ400965\|AJ400965.1 Proteus mirabilis ORF1 DNA, katA gene and menE gene, strain PR. 76 3e-27 3 AJ400964\|AJ400964.1 Proteus mirabilis ORF1 DNA, katA gene and menE gene, wild type. 76 3e-27 3 AB006327\|AB006327.1 Candida albicans mRNA for catalase, complete cds. 94 2e-26 3
dna update	2004. 1. 5
Homology vs Protein	Score E Sequences producing significant alignments: (bits) Value AF090443_1(AF090443\|pid:none) Dictyostelium discoideum catalase ... 468 e-130 AY378080_1(AY378080\|pid:none) Tetrahymena thermophila putative c... 295 2e-78 (O93662) RecName: Full=Catalase; EC=1.11.1.6; &AJ00593... 289 1e-76 CP000300_481(CP000300\|pid:none) Methanococcoides burtonii DSM 62... 283 7e-75 (Q9XZD5) RecName: Full=Peroxisomal catalase; EC=1.11.1.... 275 3e-72 CQ796333_1(CQ796333\|pid:none) Sequence 109 from Patent WO2004027... 270 8e-71 AE017333_3935(AE017333\|pid:none) Bacillus licheniformis DSM 13, ... 270 8e-71 CP000560_826(CP000560\|pid:none) Bacillus amyloliquefaciens FZB42... 269 2e-70 (P90682) RecName: Full=Catalase; EC=1.11.1.6; &Y10611_... 268 2e-70 (P26901) RecName: Full=Vegetative catalase; EC=1.11.1.6... 268 3e-70
protein update	2009. 5.27
PSORT	psg: 0.68 gvh: 0.37 alm: 0.47 top: 0.53 tms: 0.00 mit: 0.38 mip: 0.05 nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00 act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00 dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00 m3a: 0.00 m3b: 0.00 m_ : 1.00 44.0 %: mitochondrial 24.0 %: cytoplasmic 16.0 %: nuclear 4.0 %: cytoskeletal 4.0 %: extracellular, including cell wall 4.0 %: plasma membrane 4.0 %: peroxisomal >> prediction for SFJ415 is mit
5' end seq. ID	SFJ415F
5' end seq.	>SFJ415F.Seq GGATATATTTTATTTGGGAAAAATAAATAAATAAATAAATAAATATGTCAGCTCCAGTTT TAACCACCAGTAGTGGTTCACCAATTGATAACAATTTAAACTCAATGACCGCAGGTGTTA ATGGTCCAATTTTAATTCAAGATTTCACTTTAATTGATAAACTTGCTCATTTCGATCGTG AACGTATCCCAGAACGTGTTGTACATGCTAAAGGTGCTGGTGCCCATGGTTATTTCGAAG TTACCTCAAGTGATGTACCAAAATGGTGTAAAGCTAAATTCTTAAATAAAGTTGGTAAGA GAACACCAATCTTCACCCGTTTCTCTACTGTTGGTGGTGAAAAAGGTTCATCCGATTCTG AAAGAGATCCAAGAGGTTTCGCTGTCAAATTTTATACTGAAGAAGGTAACTTTGATATGG TCGGTAATAATACTCCAGTTTTCTTTATTCGTGATCCATCAAAATTCCCAGATTTCATTC ATACACAAAAACGTAATCCACAAACAAATTGTAAAGATCCAAATATGTTTTGGGATTTTT TAGGTCAAACACCAGAATCAACACATCAAGTATCAATTTTATTCTCTGATTAGAGGTACA CCAAAATCATATCGTCATATGCCATGGTTTCTCATCACA----------
Length of 5' end seq.	639
3' end seq. ID	SFJ415Z
3' end seq.	>SFJ415Z.Seq ----------GTTTCAATCCATTCGATGTAACAAAGATTTGGTCACACAAAGACTATCCA TTAATTCAAATTGGTCGTATGGTTTTGAATCGTAATCCAGAGAATTACTTTGCTGAAGTT GAACAAGCTGCCTTCTCACCATCCCACATGGTTCCAGGTATTGAACCATCACCAGATAAG ATGTTACAAGGTCGTCTCTTCTCTTATCCAGATACTCATCGTCATCGTTTAGGTGTAAAC TATCAACAAATCCCAGTCAATTGTCCATTCGCCGTAAAGGGTGGTGTTAAAAACTACCAA CGTGATGGTTTCATGGCTGTCAATGGTAATGGTGGTAAAGGTCCAAACTATCAACCAAAC TCTTTCGGTGGTCCAGAGCCACATCCAGAATTTGCTCAACATAAATTTGACGTCTCTGGT TTCGCTGCTCGTCAACCATACAATCATCCAAATGACGACTTTGTTCAACCAGGTGATTTA TATAGACTCATGTCTGAAGATGCCAAATCTCGTTTCGTCTCTAATTTAGTCGGTCACATG TCCGGTGTCACCATCAAAGAAATTCAAGTTCGTGCCGTTTCAAACTTTTACAAGGCTGAC AAAGATTTAGGTGCTCGTTTATGTAAGGGTCTTGGTATTGATGTTAATGATGTCATCAAA TTCGCTGCTAGATCAAACTGTAAATCAATATATTAAAAATAAAAAAAAA
Length of 3' end seq.	699
Connected seq. ID	SFJ415P
Connected seq.	>SFJ415P.Seq GGATATATTTTATTTGGGAAAAATAAATAAATAAATAAATAAATATGTCAGCTCCAGTTT TAACCACCAGTAGTGGTTCACCAATTGATAACAATTTAAACTCAATGACCGCAGGTGTTA ATGGTCCAATTTTAATTCAAGATTTCACTTTAATTGATAAACTTGCTCATTTCGATCGTG AACGTATCCCAGAACGTGTTGTACATGCTAAAGGTGCTGGTGCCCATGGTTATTTCGAAG TTACCTCAAGTGATGTACCAAAATGGTGTAAAGCTAAATTCTTAAATAAAGTTGGTAAGA GAACACCAATCTTCACCCGTTTCTCTACTGTTGGTGGTGAAAAAGGTTCATCCGATTCTG AAAGAGATCCAAGAGGTTTCGCTGTCAAATTTTATACTGAAGAAGGTAACTTTGATATGG TCGGTAATAATACTCCAGTTTTCTTTATTCGTGATCCATCAAAATTCCCAGATTTCATTC ATACACAAAAACGTAATCCACAAACAAATTGTAAAGATCCAAATATGTTTTGGGATTTTT TAGGTCAAACACCAGAATCAACACATCAAGTATCAATTTTATTCTCTGATTAGAGGTACA CCAAAATCATATCGTCATATGCCATGGTTTCTCATCACA----------GTTTCAATCCA TTCGATGTAACAAAGATTTGGTCACACAAAGACTATCCATTAATTCAAATTGGTCGTATG GTTTTGAATCGTAATCCAGAGAATTACTTTGCTGAAGTTGAACAAGCTGCCTTCTCACCA TCCCACATGGTTCCAGGTATTGAACCATCACCAGATAAGATGTTACAAGGTCGTCTCTTC TCTTATCCAGATACTCATCGTCATCGTTTAGGTGTAAACTATCAACAAATCCCAGTCAAT TGTCCATTCGCCGTAAAGGGTGGTGTTAAAAACTACCAACGTGATGGTTTCATGGCTGTC AATGGTAATGGTGGTAAAGGTCCAAACTATCAACCAAACTCTTTCGGTGGTCCAGAGCCA CATCCAGAATTTGCTCAACATAAATTTGACGTCTCTGGTTTCGCTGCTCGTCAACCATAC AATCATCCAAATGACGACTTTGTTCAACCAGGTGATTTATATAGACTCATGTCTGAAGAT GCCAAATCTCGTTTCGTCTCTAATTTAGTCGGTCACATGTCCGGTGTCACCATCAAAGAA ATTCAAGTTCGTGCCGTTTCAAACTTTTACAAGGCTGACAAAGATTTAGGTGCTCGTTTA TGTAAGGGTCTTGGTATTGATGTTAATGATGTCATCAAATTCGCTGCTAGATCAAACTGT AAATCAATATATTAAAAATAAAAAAAAA
Length of connected seq.	1338
Full length Seq ID	-
Full length Seq.	-
Length of full length seq.	-

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas

Dicty_cDB - Dictyostelium discoideum cDNA Clone Overview

Dicty_cDB

Atlas