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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFJ390
Library SF
(Link to library)
Clone ID SFJ390
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U08694-1
Original site URL
Representative seq. ID SFJ390P
(Link to Original site)
Representative DNA sequence 
>SFJ390 (SFJ390Q) /CSM/SF/SFJ3-D/SFJ390Q.Seq.d/
TTGGCCTACTGGNAAATAAATAAATAAATAAAATGTCAGAAAAAGAAACAAATACAACAT
CAACAGAAAATAAAGGAAAAGAAAAACAAGAACAAACTAATACAAATTCAACAACAGAAT
CAACAAATAATCAAGTTGATGAAGAATATGAAAGACCAGGAAGATCAGAAGGTTTAGATG
AATTTGGAATTCAATTAGATATTCAACAATCTGATCCAAATTCACCATTATATTCAGTGA
AAACATTTGAAGAATTAGGATTAAAACCAGAGTTATTAAAGGGTGTTTATGCAATGGGTT
ATAATAAACCATCTAAAATTCAAGAAGCAGCATTACCAATTATTATTCAATCACCAAATA
ATTTAATTGCACAATCACAATCAGGTACTGGTAAAACTGCTGCATTCACATTGGGTATGT
TAAATTGTGTTGATCCATCAATCAATGCACCACAAGCAATTTGTATTAGTCCAACCAAAG
AATTAGCATTACAAACTTTTGAAGTTATCTCAAAGATTGGTCAATTTTCAAATATTAAAC
CATTATTATATATATCAGAGATTTGAAGTACCAAAAAATGTTACAAATCAAGTTATXXXX
XXXXXXTCTGCAACATTTAGTATGGGAGTTGAGGAATTAATTAAAAAGATCGTTCAAGAT
CCATATACAAGTATAAGATTAAAAAGACAAGAGTTATCTGTTGAAAAGATTCATCAATAT
TTTATAGATTGTGGTAGTGAAGATAATAAGGCATTGATTCTATCAGACATCTATGGTTTC
ATATCAGTTGGTCAGTCAATTGTATTCGTACATACAATTGCAACTGCAAAATCGGTACAC
CAAAAAATGGTTGATGAAGGTCATTCAGTTTCATTACTCTATGGTAAAGATTTAACAACA
GAGGAACGTTTTAAACAAATTAAAGATTTCAAAGATGGTAAATCAAAAGTATTGATAACA
ACAAATGTTTTAGCTAGAGGTATTGATATTCCACAAGTTTCATTGGTGATCAATTATGAT
GTACCATTGGATGAAATGGGTAAACCTGACCCAGTTCATTATCTTCATCGTATTGGTAGA
GTTGGTAGATTCGGTCGTTCTGGTGTTGCTCTTAGTTTTGTTTATGATCAACAATCAACA
AATAAATTAATGAATATTTCAACCCATCTTGGTGTACCTTTAAAAGAATTAAAATCTTCT
GAAATTNAGTCTTTAGAGGTATCTTAAAAGGTATTAGAAATCAATTAACACCATTA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
laywxink*ikcqkkkqiqhqqkikekknknkliqiqqqnqqiiklmknmkdqedqkv*m
nlefn*ifnnliqihhyiq*khlkn*d*nqsy*rvfmqwviinhlkfkkqhyqllfnhqi
i*lhnhnqvlvkllhshwvc*ivlihqsmhhkqfvlvqpkn*HYKLLKLSQRLVNFQILN
HYYIYQRFEVPKNVTNQV---

---SATFSMGVEELIKKIVQDPYTSIRLKRQELSVEKIHQYFIDCGSEDNKALILSDIYG
FISVGQSIVFVHTIATAKSVHQKMVDEGHSVSLLYGKDLTTEERFKQIKDFKDGKSKVLI
TTNVLARGIDIPQVSLVINYDVPLDEMGKPDPVHYLHRIGRVGRFGRSGVALSFVYDQQS
TNKLMNISTHLGVPLKELKSSEIXSLEVS*kvlein*hh
Translated Amino Acid sequence (All Frames) 
Frame A:
laywxink*ikcqkkkqiqhqqkikekknknkliqiqqqnqqiiklmknmkdqedqkv*m
nlefn*ifnnliqihhyiq*khlkn*d*nqsy*rvfmqwviinhlkfkkqhyqllfnhqi
i*lhnhnqvlvkllhshwvc*ivlihqsmhhkqfvlvqpkn*HYKLLKLSQRLVNFQILN
HYYIYQRFEVPKNVTNQV---

---SATFSMGVEELIKKIVQDPYTSIRLKRQELSVEKIHQYFIDCGSEDNKALILSDIYG
FISVGQSIVFVHTIATAKSVHQKMVDEGHSVSLLYGKDLTTEERFKQIKDFKDGKSKVLI
TTNVLARGIDIPQVSLVINYDVPLDEMGKPDPVHYLHRIGRVGRFGRSGVALSFVYDQQS
TNKLMNISTHLGVPLKELKSSEIXSLEVS*kvlein*hh

Frame B:
wptgk*ink*nvrkrnkyninrk*rkrktrtn*ykfnnrink*ss**ri*ktrkirrfr*
iwnsirysti*skftiifseni*ririktrvikgclcngl**ti*nsrssitnyysitk*
fnctitiryw*nccihigyvklc*sinqcttsnly*snqrisitnf*sylkdwsifky*t
iiiyirdlkyqkmlqikl---

---lqhlvwelrn*lkrsfkihiqv*d*kdksyllkrfinil*ivvvkiirh*fyqtsmv
syqlvsqlysyiqlqlqnrytkkwlmkviqfhysmvki*qqrnvlnklkiskmvnqky**
qqmf*levlifhkfhw*simmyhwmkwvnltqfiifivlvelvdsvvlvlllvlfminnq
qin**ifqpilvyl*kn*nllkxsl*rylkry*ksinti

Frame C:
gllxnk*inkmseketnttstenkgkekqeqtntnsttestnnqvdeeyerpgrseglde
fgiqldiqqsdpnsplysvktfeelglkpellkgvyamgynkpskiqeaalpiiiqspnn
liaqsqsgtgktaaftlgmlncvdpsinapqaicisptkelalqtfeviskigqfsnikp
llyisei*stkkcykssy---

---cni*ygs*gin*kdrsrsiykykikktrvic*kdssifyrlw**r**gidsirhlwf
hiswsvncirtyncnckigtpkng**rsfsfitlw*rfnnrgtf*tn*rfqrw*iksidn
nkcfs*ry*ystsfigdql*ctig*ng*t*psslsssyw*sw*irsfwccs*fcl*stin
k*ineyfnpswctfkrikif*nxvfrgilkgirnqltpl
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFJ390 (SFJ390Q) /CSM/SF/SFJ3-D/SFJ390Q.Seq.d/                       2173   0.0
AFH706 (AFH706Q) /CSM/AF/AFH7-A/AFH706Q.Seq.d/                       1245   0.0
AFC886 (AFC886Q) /CSM/AF/AFC8-D/AFC886Q.Seq.d/                       1231   0.0
CFG311 (CFG311Q) /CSM/CF/CFG3-A/CFG311Q.Seq.d/                       1213   0.0
VFM343 (VFM343Q) /CSM/VF/VFM3-B/VFM343Q.Seq.d/                        549   e-155
VFB308 (VFB308Q) /CSM/VF/VFB3-A/VFB308Q.Seq.d/                         50   8e-05
SHB305 (SHB305Q) /CSM/SH/SHB3-A/SHB305Q.Seq.d/                         42   0.020
AFJ849 (AFJ849Q) /CSM/AF/AFJ8-C/AFJ849Q.Seq.d/                         42   0.020
VFO234 (VFO234Q) /CSM/VF/VFO2-B/VFO234Q.Seq.d/                         40   0.080
VFN391 (VFN391Q) /CSM/VF/VFN3-D/VFN391Q.Seq.d/                         40   0.080
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF002677|AF002677.1 Dictyostelium discoideum DEAD-box RNA helicase (HelC) mRNA, complete cds.  1092   0.0    3
BP179955|BP179955.1 Bombyx mori cDNA, clone: ovS309A02f.           48   3e-14  3
AV401150|AV401150.1 Bombyx mori cDNA clone:e96h0289.               48   7e-13  3
AU000564|AU000564.1 Bombyx mori cDNA, clone e40707.                48   9e-13  3
AV400446|AV400446.1 Bombyx mori cDNA clone:br--1252.               48   9e-13  3
AV401489|AV401489.1 Bombyx mori cDNA clone:e96h0796.               44   1e-11  4
AL407601|AL407601.1 T3 end of clone AV0AA003C07 of library AV0AA from strain CBS 379 of Saccharomyces exiguus.    58   2e-10  2
BI452414|BI452414.1 GI10_G07 Glomus intraradices extra-radical mycelium Glomus intraradices cDNA clone GI10_G07 3', mRNA sequence.    52   5e-10  2
BI452308|BI452308.1 GI08_E11 Glomus intraradices extra-radical mycelium Glomus intraradices cDNA clone GI08_E11 3', mRNA sequence.    58   3e-08  2
AF005239|AF005239.1 Drosophila melanogaster DEAD-box helicase (Dbp80) mRNA, complete cds.    46   4e-07  2
dna update 2004. 1. 5
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54TF8) RecName: Full=ATP-dependent RNA helicase ddx19;        ...   397   e-111
AF002677_1(AF002677|pid:none) Dictyostelium discoideum DEAD-box ...   365   1e-99
FM992690_168(FM992690|pid:none) Candida dubliniensis CD36 chromo...   192   2e-47
(Q6CJU1) RecName: Full=ATP-dependent RNA helicase DBP5;         ...   192   2e-47
(Q75C39) RecName: Full=ATP-dependent RNA helicase DBP5;         ...   191   3e-47
(A6ZNQ1) RecName: Full=ATP-dependent RNA helicase DBP5;         ...   188   4e-46
(A3GH91) RecName: Full=ATP-dependent RNA helicase DBP5;         ...   186   1e-45
(Q4P7Z8) RecName: Full=ATP-dependent RNA helicase DBP5;         ...   184   6e-45
(Q09747) RecName: Full=ATP-dependent RNA helicase dbp5;         ...   179   1e-43
(Q6FKN8) RecName: Full=ATP-dependent RNA helicase DBP5;         ...   177   7e-43
protein update 2009. 5.26
PSORT 

 psg: 0.77  gvh: 0.31  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.37  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 32.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: endoplasmic reticulum

>> prediction for SFJ390 is nuc
5' end seq. ID SFJ390F
5' end seq. 
>SFJ390F.Seq
TTGGCCTACTGGNAAATAAATAAATAAATAAAATGTCAGAAAAAGAAACAAATACAACAT
CAACAGAAAATAAAGGAAAAGAAAAACAAGAACAAACTAATACAAATTCAACAACAGAAT
CAACAAATAATCAAGTTGATGAAGAATATGAAAGACCAGGAAGATCAGAAGGTTTAGATG
AATTTGGAATTCAATTAGATATTCAACAATCTGATCCAAATTCACCATTATATTCAGTGA
AAACATTTGAAGAATTAGGATTAAAACCAGAGTTATTAAAGGGTGTTTATGCAATGGGTT
ATAATAAACCATCTAAAATTCAAGAAGCAGCATTACCAATTATTATTCAATCACCAAATA
ATTTAATTGCACAATCACAATCAGGTACTGGTAAAACTGCTGCATTCACATTGGGTATGT
TAAATTGTGTTGATCCATCAATCAATGCACCACAAGCAATTTGTATTAGTCCAACCAAAG
AATTAGCATTACAAACTTTTGAAGTTATCTCAAAGATTGGTCAATTTTCAAATATTAAAC
CATTATTATATATATCAGAGATTTGAAGTACCAAAAAATGTTACAAATCAAGTTAT----
------
Length of 5' end seq. 596
3' end seq. ID SFJ390Z
3' end seq. 
>SFJ390Z.Seq
----------TCTGCAACATTTAGTATGGGAGTTGAGGAATTAATTAAAAAGATCGTTCA
AGATCCATATACAAGTATAAGATTAAAAAGACAAGAGTTATCTGTTGAAAAGATTCATCA
ATATTTTATAGATTGTGGTAGTGAAGATAATAAGGCATTGATTCTATCAGACATCTATGG
TTTCATATCAGTTGGTCAGTCAATTGTATTCGTACATACAATTGCAACTGCAAAATCGGT
ACACCAAAAAATGGTTGATGAAGGTCATTCAGTTTCATTACTCTATGGTAAAGATTTAAC
AACAGAGGAACGTTTTAAACAAATTAAAGATTTCAAAGATGGTAAATCAAAAGTATTGAT
AACAACAAATGTTTTAGCTAGAGGTATTGATATTCCACAAGTTTCATTGGTGATCAATTA
TGATGTACCATTGGATGAAATGGGTAAACCTGACCCAGTTCATTATCTTCATCGTATTGG
TAGAGTTGGTAGATTCGGTCGTTCTGGTGTTGCTCTTAGTTTTGTTTATGATCAACAATC
AACAAATAAATTAATGAATATTTCAACCCATCTTGGTGTACCTTTAAAAGAATTAAAATC
TTCTGAAATTNAGTCTTTAGAGGTATCTTAAAAGGTATTAGAAATCAATTAACACCATTA
Length of 3' end seq. 650
Connected seq. ID SFJ390P
Connected seq. 
>SFJ390P.Seq
TTGGCCTACTGGNAAATAAATAAATAAATAAAATGTCAGAAAAAGAAACAAATACAACAT
CAACAGAAAATAAAGGAAAAGAAAAACAAGAACAAACTAATACAAATTCAACAACAGAAT
CAACAAATAATCAAGTTGATGAAGAATATGAAAGACCAGGAAGATCAGAAGGTTTAGATG
AATTTGGAATTCAATTAGATATTCAACAATCTGATCCAAATTCACCATTATATTCAGTGA
AAACATTTGAAGAATTAGGATTAAAACCAGAGTTATTAAAGGGTGTTTATGCAATGGGTT
ATAATAAACCATCTAAAATTCAAGAAGCAGCATTACCAATTATTATTCAATCACCAAATA
ATTTAATTGCACAATCACAATCAGGTACTGGTAAAACTGCTGCATTCACATTGGGTATGT
TAAATTGTGTTGATCCATCAATCAATGCACCACAAGCAATTTGTATTAGTCCAACCAAAG
AATTAGCATTACAAACTTTTGAAGTTATCTCAAAGATTGGTCAATTTTCAAATATTAAAC
CATTATTATATATATCAGAGATTTGAAGTACCAAAAAATGTTACAAATCAAGTTAT----
------TCTGCAACATTTAGTATGGGAGTTGAGGAATTAATTAAAAAGATCGTTCAAGAT
CCATATACAAGTATAAGATTAAAAAGACAAGAGTTATCTGTTGAAAAGATTCATCAATAT
TTTATAGATTGTGGTAGTGAAGATAATAAGGCATTGATTCTATCAGACATCTATGGTTTC
ATATCAGTTGGTCAGTCAATTGTATTCGTACATACAATTGCAACTGCAAAATCGGTACAC
CAAAAAATGGTTGATGAAGGTCATTCAGTTTCATTACTCTATGGTAAAGATTTAACAACA
GAGGAACGTTTTAAACAAATTAAAGATTTCAAAGATGGTAAATCAAAAGTATTGATAACA
ACAAATGTTTTAGCTAGAGGTATTGATATTCCACAAGTTTCATTGGTGATCAATTATGAT
GTACCATTGGATGAAATGGGTAAACCTGACCCAGTTCATTATCTTCATCGTATTGGTAGA
GTTGGTAGATTCGGTCGTTCTGGTGTTGCTCTTAGTTTTGTTTATGATCAACAATCAACA
AATAAATTAATGAATATTTCAACCCATCTTGGTGTACCTTTAAAAGAATTAAAATCTTCT
GAAATTNAGTCTTTAGAGGTATCTTAAAAGGTATTAGAAATCAATTAACACCATTA
Length of connected seq. 1246
Full length Seq ID -
Full length Seq. -
Length of full length seq. -