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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFJ367
Library SF
(Link to library)
Clone ID SFJ367
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16471-1
Original site URL
Representative seq. ID SFJ367P
(Link to Original site)
Representative DNA sequence 
>SFJ367 (SFJ367Q) /CSM/SF/SFJ3-C/SFJ367Q.Seq.d/
AAATCAACAAGATCTTAAACAAGAGAAAAGAGCCAATCAACAAGAATTAATCAATTATGA
ATTGAATTTACAAGAAGATCAAGAACAATATGAACTTTTATTAGATCAACTCTATGATGA
ACAACAACAACAACCACAAAAAGTTTCAAATAAACAACAACTTCAAGAACAACAAATTAA
TTCACCCGAGGATATTCAATATCAATTAAATCATTTAAATCAACCATTCCAAGATGACTA
TCATAATGATCAAACTGAAGAATTAAAAGATGATGATTATAATTTTAATGATCAACAAAT
TAACAATGGTCAATTTGAAAATAATGTTGAAGAATTTCCTGATTTAAATGATGCTAATGA
TAATTTTGAACAAGTTAACAACAACAACAACAACATCAATAATAATAACAATAACAACTT
TAAAGTTGATAAATCAAAGAAAAGTGCTCAACAAGTTGAAATTGCTTTAGAGAATGAAAG
ACTTTATCTTCAAGAAGTTGAAGATGCTCCAGAGAGACTATATGAAGAAATTCATAATTC
CAATTTGAATAAAGCAGTTCAAGAGGCTGAAGAAATTGAAAGAXXXXXXXXXXTAAGATT
GTAACTCAAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAGATGCCATTGA
ACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGC
CCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGA
AATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAA
TTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGTTCA
AGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAG
ACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGA
TGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAA
TCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTAAAAATCAATT
AAAAAATATTCAACATGAACAACAAATCCAAGAACAACAAGATAAATTAAATCAAGAAAA
AAATCAACAATTATTAGAACAAAAACAAAATCAAAAATAATTTAATCATTCTTTCTTTTT
AAAAAACT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
NQQDLKQEKRANQQELINYELNLQEDQEQYELLLDQLYDEQQQQPQKVSNKQQLQEQQIN
SPEDIQYQLNHLNQPFQDDYHNDQTEELKDDDYNFNDQQINNGQFENNVEEFPDLNDAND
NFEQVNNNNNNINNNNNNNFKVDKSKKSAQQVEIALENERLYLQEVEDAPERLYEEIHNS
NLNKAVQEAEEIER---

---KIVTQNGKC*k**nyq*trch*tsstftty*kw*ryr*v*scpt*sclfr*k*trcc
*itk*ngpirtlt*re*rrtifk*kfttt**e*ksttttrtttsssnkc*ttnr*tt*sy
qrisktrstketknstrercclle*c*ksst*igc*ig*k**tresr*efssrettis*p
n*ksikkyst*ttnprttr*iksrkkstiirtktkskii*sfflfkk
Translated Amino Acid sequence (All Frames) 
Frame A:
kstrs*treksqstrinql*ieftrrsrti*tfirstl**ttttttksfk*tttsrttn*
ftrgysisiksfkstipr*ls**sn*rikr**l*f**stn*qwsi*k*c*ris*fk*c**
*f*ts*qqqqqhq***q*ql*s**ikekcsts*ncfre*ktlssrs*rcsreti*rns*f
qfe*sssrg*rn*k---

---*dcnskwemlkimklpmnkmplnklniynvlkmvkismsmklpnmklpf*mkmnkml
lnykmkwtn*nsylkrmkknnfqikiynnlmrmkinnnnkdnnkfkqqmlnnkslnnlkl
sknfkdkinkrnkkfnkrtmlst*vmlkklnlnwmlnwlkiinkrikmri*fkrnnnllt
klkin*kifnmnnksknnkin*ikkkinny*nknkiknnliilsf*kt

Frame B:
NQQDLKQEKRANQQELINYELNLQEDQEQYELLLDQLYDEQQQQPQKVSNKQQLQEQQIN
SPEDIQYQLNHLNQPFQDDYHNDQTEELKDDDYNFNDQQINNGQFENNVEEFPDLNDAND
NFEQVNNNNNNINNNNNNNFKVDKSKKSAQQVEIALENERLYLQEVEDAPERLYEEIHNS
NLNKAVQEAEEIER---

---KIVTQNGKC*k**nyq*trch*tsstftty*kw*ryr*v*scpt*sclfr*k*trcc
*itk*ngpirtlt*re*rrtifk*kfttt**e*ksttttrtttsssnkc*ttnr*tt*sy
qrisktrstketknstrercclle*c*ksst*igc*ig*k**tresr*efssrettis*p
n*ksikkyst*ttnprttr*iksrkkstiirtktkskii*sfflfkk

Frame C:
inkilnkrkepinkn*simn*iykkiknnmnfy*insmmnnnnnhkkfqinnnfknnkli
hprifnin*ii*inhskmtiimiklkn*kmmiiilminkltmvnlkimlknfli*mmlmi
ilnklttttttsiiitittlklinqrkvlnklkll*rmkdfifkklkmlqrdymkkfiip
i*ikqfkrlkklk---

---rl*lkmgnvenneitneqdaieqaqhlqriengedideyeaaqhevafldeneqdaa
klqnemdqlellleeneeeqfsnknlqqlnenenqqqqqgqqqvqatnveqqiveqlkvi
kefqrqdqqkkqkiqqendavylsdvekaqleldaelaknnkqenqdenlvqekqqspdq
iknqlkniqheqqiqeqqdklnqeknqqlleqkqnqk*fnhsfflkn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFJ367 (SFJ367Q) /CSM/SF/SFJ3-C/SFJ367Q.Seq.d/                        835   0.0
AHI274 (AHI274Q) /CSM/AH/AHI2-D/AHI274Q.Seq.d/                        543   e-153
CHH220 (CHH220Q) /CSM/CH/CHH2-A/CHH220Q.Seq.d/                        537   e-151
SHA503 (SHA503Q) /CSM/SH/SHA5-A/SHA503Q.Seq.d/                        535   e-151
CHO777 (CHO777Q) /CSM/CH/CHO7-D/CHO777Q.Seq.d/                        535   e-151
CHJ659 (CHJ659Q) /CSM/CH/CHJ6-C/CHJ659Q.Seq.d/                        535   e-151
AHQ635 (AHQ635Q) /CSM/AH/AHQ6-B/AHQ635Q.Seq.d/                        529   e-149
AHC216 (AHC216Q) /CSM/AH/AHC2-A/AHC216Q.Seq.d/                        529   e-149
VHP272 (VHP272Q) /CSM/VH/VHP2-C/VHP272Q.Seq.d/                        527   e-148
VHG846 (VHG846Q) /CSM/VH/VHG8-B/VHG846Q.Seq.d/                        527   e-148
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

U25143|U25143.1 Dictyostelium discoideum cAMP-inducible prespore protein gene, complete cds.   527   0.0    6
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.   127   1e-28  16
AC115576|AC115576.1 Dictyostelium discoideum chromosome 2 map 5868742-5900083 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces.   127   4e-25  1
AP006628|AP006628.1 Onion yellows phytoplasma DNA, complete genome.    34   2e-13  30
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    38   3e-12  21
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    34   3e-11  25
AE014820|AE014820.1 Plasmodium falciparum 3D7 chromosome 14 section 5 of 13 of the complete sequence.    36   9e-11  16
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.            36   1e-10  28
AL844509|AL844509.1 Plasmodium falciparum chromosome 13.           38   4e-09  24
AC116988|AC116988.2 Dictyostelium discoideum chromosome 2 map 6445720-6776760 strain AX4, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    36   1e-08  22
dna update 2004. 1. 5
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54682) RecName: Full=cAMP-inducible prespore protein D7; Flags...   468   e-130
AF305694_1(AF305694|pid:none) Kaposi's sarcoma-associated herpes...    45   0.007
AF192756_1(AF192756|pid:none) Kaposi's sarcoma-associated herpes...    44   0.009
U52064_1(U52064|pid:none) Kaposi's sarcoma-associated herpes-lik...    44   0.012
AF148805_82(AF148805|pid:none) Human herpesvirus 8 type P isolat...    44   0.015
AL844506_105(AL844506|pid:none) Plasmodium falciparum 3D7 chromo...    43   0.026
U93872_83(U93872|pid:none) Kaposi's sarcoma-associated herpesvir...    41   0.077
AF360120_1(AF360120|pid:none) Human herpesvirus 8 ORF73 gene, co...    41   0.077
(O76329) RecName: Full=Interaptin; AltName: Full=Alpha-actinin B...    40   0.13
AL844506_76(AL844506|pid:none) Plasmodium falciparum 3D7 chromos...    40   0.17
protein update 2009. 5.26
PSORT 

 psg: 0.56  gvh: 0.35  alm: 0.67  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 28.0 %: nuclear
	 24.0 %: mitochondrial
	 12.0 %: cytoskeletal

>> prediction for SFJ367 is cyt
5' end seq. ID SFJ367F
5' end seq. 
>SFJ367F.Seq
AAATCAACAAGATCTTAAACAAGAGAAAAGAGCCAATCAACAAGAATTAATCAATTATGA
ATTGAATTTACAAGAAGATCAAGAACAATATGAACTTTTATTAGATCAACTCTATGATGA
ACAACAACAACAACCACAAAAAGTTTCAAATAAACAACAACTTCAAGAACAACAAATTAA
TTCACCCGAGGATATTCAATATCAATTAAATCATTTAAATCAACCATTCCAAGATGACTA
TCATAATGATCAAACTGAAGAATTAAAAGATGATGATTATAATTTTAATGATCAACAAAT
TAACAATGGTCAATTTGAAAATAATGTTGAAGAATTTCCTGATTTAAATGATGCTAATGA
TAATTTTGAACAAGTTAACAACAACAACAACAACATCAATAATAATAACAATAACAACTT
TAAAGTTGATAAATCAAAGAAAAGTGCTCAACAAGTTGAAATTGCTTTAGAGAATGAAAG
ACTTTATCTTCAAGAAGTTGAAGATGCTCCAGAGAGACTATATGAAGAAATTCATAATTC
CAATTTGAATAAAGCAGTTCAAGAGGCTGAAGAAATTGAAAGA----------
Length of 5' end seq. 583
3' end seq. ID SFJ367Z
3' end seq. 
>SFJ367Z.Seq
----------TAAGATTGTAACTCAAAATGGGAAATGTTGAAAATAATGAAATTACCAAT
GAACAAGATGCCATTGAACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATC
GATGAGTATGAAGCTGCCCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCT
GCTAAATTACAAAATGAAATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAA
CAATTTTCAAATAAAAATTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAA
GGACAACAACAAGTTCAAGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTT
ATCAAAGAATTTCAAAGACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGAT
GCTGTCTACTTGAGTGATGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAA
AATAATAAACAAGAGAATCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGAC
CAAATTAAAAATCAATTAAAAAATATTCAACATGAACAACAAATCCAAGAACAACAAGAT
AAATTAAATCAAGAAAAAAATCAACAATTATTAGAACAAAAACAAAATCAAAAATAATTT
AATCATTCTTTCTTTTTAAAAAACT
Length of 3' end seq. 675
Connected seq. ID SFJ367P
Connected seq. 
>SFJ367P.Seq
AAATCAACAAGATCTTAAACAAGAGAAAAGAGCCAATCAACAAGAATTAATCAATTATGA
ATTGAATTTACAAGAAGATCAAGAACAATATGAACTTTTATTAGATCAACTCTATGATGA
ACAACAACAACAACCACAAAAAGTTTCAAATAAACAACAACTTCAAGAACAACAAATTAA
TTCACCCGAGGATATTCAATATCAATTAAATCATTTAAATCAACCATTCCAAGATGACTA
TCATAATGATCAAACTGAAGAATTAAAAGATGATGATTATAATTTTAATGATCAACAAAT
TAACAATGGTCAATTTGAAAATAATGTTGAAGAATTTCCTGATTTAAATGATGCTAATGA
TAATTTTGAACAAGTTAACAACAACAACAACAACATCAATAATAATAACAATAACAACTT
TAAAGTTGATAAATCAAAGAAAAGTGCTCAACAAGTTGAAATTGCTTTAGAGAATGAAAG
ACTTTATCTTCAAGAAGTTGAAGATGCTCCAGAGAGACTATATGAAGAAATTCATAATTC
CAATTTGAATAAAGCAGTTCAAGAGGCTGAAGAAATTGAAAGA----------TAAGATT
GTAACTCAAAATGGGAAATGTTGAAAATAATGAAATTACCAATGAACAAGATGCCATTGA
ACAAGCTCAACATTTACAACGTATTGAAAATGGTGAAGATATCGATGAGTATGAAGCTGC
CCAACATGAAGTTGCCTTTTTAGATGAAAATGAACAAGATGCTGCTAAATTACAAAATGA
AATGGACCAATTAGAACTCTTACTTGAAGAGAATGAAGAAGAACAATTTTCAAATAAAAA
TTTACAACAACTTAATGAGAATGAAAATCAACAACAACAACAAGGACAACAACAAGTTCA
AGCAACAAATGTTGAACAACAAATCGTTGAACAACTTAAAGTTATCAAAGAATTTCAAAG
ACAAGATCAACAAAAGAAACAAAAAATTCAACAAGAGAACGATGCTGTCTACTTGAGTGA
TGTTGAAAAAGCTCAACTTGAATTGGATGCTGAATTGGCTAAAAATAATAAACAAGAGAA
TCAAGATGAGAATTTAGTTCAAGAGAAACAACAATCTCCTGACCAAATTAAAAATCAATT
AAAAAATATTCAACATGAACAACAAATCCAAGAACAACAAGATAAATTAAATCAAGAAAA
AAATCAACAATTATTAGAACAAAAACAAAATCAAAAATAATTTAATCATTCTTTCTTTTT
AAAAAACT
Length of connected seq. 1258
Full length Seq ID -
Full length Seq. -
Length of full length seq. -