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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFJ266
Library SF
(Link to library)
Clone ID SFJ266
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U12096-1
Original site URL
Representative seq. ID SFJ266P
(Link to Original site)
Representative DNA sequence 
>SFJ266 (SFJ266Q) /CSM/SF/SFJ2-C/SFJ266Q.Seq.d/
CACTGTTGGCCTACTGGTAAGCTAAAATATAAAAAAATGCTATGCCAAATTGTTAAAATA
CCAATTGATTTATTATATTCCCAATTTTTTAAACCTAAAAATTCAATTAAATTATTACCA
TTCGAATAAAGACATGGTATTGGTGGTTGAGGACATTGAAATTCAAAATCTCTATATTGA
ATGATTACTATTGATGAGAAACCATAAAATAGATAATCAATATGATGAATCCAACCAAAA
CTATCAGGTAATGAATTAATTGGTACTAAAAATCCGGAGAATAATACCAATACTACTGAT
ACACCTGTACAATATGAAAATGTTAAATCAACAGTTCCAGCAATATTTGACATTGCTATT
ACCATAAAAACTGATGCTAAAAATACCATATAAAATGAAATCAATGATAATATATATGCT
TCAAATGACCATCGCANATGAACANTACANTNNATNATTGNNGNNNTANTNANTNCNNCN
NNNAANGNTGNTNCNNTNNNNTNNNCANNGNNNCTNTNNANNNNNGNNNNGNNNGXXXXX
XXXXXAAATTTAATGAAGTTATAATAAAGAAAAATAAAGCTGATACTGATTGAGCCTCAT
TTTGATCCAACCCATCATAACCAACTGTCCCAAAACATGCAGAGAACAATAATCCAATTA
ATATTGCAATTACAATCTTTGAGAAAAACACTACCCTATTCCTCACAAAACTTTGATAAC
TTCTTTTTTGACAAACCCAATATTGATAAATGAAACCAACTCTCTTTGGTATATCAATAT
TAATTGGATCATTGGAAATGGTTGGCTGTATTTCATGTTTCCAATATTTTTCCCATGTAT
CAACAGTTGTTGAATATTGAGATGGATTATTAACAATTTCATCACATACATCCAATATGA
AATCAGCAGGATTCATTTGTGGTGGACATTTATAATTTGAATCTATACTTGAGAGATATT
CTAAAATATTTGAACCACTATAAACCATTCTCCCTTTTAATACAACCATAATATTACTAA
ATAAATAAAAAATTTCAGGACGTGGTTGATGTACTGAGCATACAACTGTTACACCTTTCA
TTTTAGTTAACTCTAATAAAACTTTCATTACTTTTAATGAATTTAAGAATCTAAACCACT
TGTAGGTTCATCTAAAAAAATAAAGA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
tvgllvs*nikkcyakllkyqliyyipnflnlkiqlnyyhsnkdmvlvvedieiqnlyie
*lllmrnhkidnqydesnqnyqvmn*lvlkirriipillihlynmkmlnqqfqqyltlll
p*KLMLKIPYKMKSMIIYMLQMTIAXEXYXXXLXXXXXXXXXXXXXXXXXXXXXXXXX--
-

---KFNEVIIKKNKADTD*asf*snps*ptvpkhaennnpiniaitifeknttlfltkl*
*llf*qtqy**mkptlfgisiligslemvgciscfqyfshvstvvey*dglltisshtsn
mksagficgghl*fesileryskifepl*tilpfnttiillnk*kisgrg*ctehttvtp
filvnsnktfitfnefknlnhl*vhlkk*r
Translated Amino Acid sequence (All Frames) 
Frame A:
hcwptgklkykkmlcqivkipidllysqffkpknsikllpfe*rhgigg*gh*nsksly*
mitidekp*nr*si**iqpklsgneligtknpenntnttdtpvqyenvkstvpaifdiai
tiktdaknti*neindniyasndhrx*txxxxixxxxxxxxxxxxxxxxxxlxxxxxx--
-

---KFNEVIIKKNKADTD*asf*snps*ptvpkhaennnpiniaitifeknttlfltkl*
*llf*qtqy**mkptlfgisiligslemvgciscfqyfshvstvvey*dglltisshtsn
mksagficgghl*fesileryskifepl*tilpfnttiillnk*kisgrg*ctehttvtp
filvnsnktfitfnefknlnhl*vhlkk*r

Frame B:
tvgllvs*nikkcyakllkyqliyyipnflnlkiqlnyyhsnkdmvlvvedieiqnlyie
*lllmrnhkidnqydesnqnyqvmn*lvlkirriipillihlynmkmlnqqfqqyltlll
p*KLMLKIPYKMKSMIIYMLQMTIAXEXYXXXLXXXXXXXXXXXXXXXXXXXXXXXXX--
-

---nlmkl**rkikliliephfdpthhnqlsqnmqrtiiqlilqlqslrktlpyssqnfd
nfffdkpnidk*nqlslvyqy*ldhwkwlavfhvsnifpmyqqllniemdy*qfhhihpi
*nqqdsfvvdiynlnlylrdilkylnhykpfslliqp*yy*inkkfqdvvdvlsiqllhl
sf*ltliklslllmnlri*ttcrfi*knk

Frame C:
llayw*aki*knampnc*ntn*fiifpif*t*kfn*iitiriktwywwlrtlkfkisiln
dyy**etik*iinmmnptktir**inwy*ksge*yqyy*ytcti*kc*insssni*hcyy
hkn*c*kyhik*nq**yicfk*psxmnxtxxxxxxxxxxxxxxxxxxxxxxxxxxxx---

---i**synkek*s*y*lsliliqpiitncpktcreq*sn*ycnynl*ekhypiphktli
tsfltnpilinetnslwyininwiigngwlyfmfpiffpcinsc*ilrwiinnfityiqy
eisrihlwwtfii*iyt*eif*ni*ttinhspf*ynhnitk*iknfrtwlmy*ayncytf
hfs*l**nfhyf**i*eskplvgsskkik
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFJ266 (SFJ266Q) /CSM/SF/SFJ2-C/SFJ266Q.Seq.d/                       1205   0.0
SFJ427 (SFJ427Q) /CSM/SF/SFJ4-B/SFJ427Q.Seq.d/                       1189   0.0
SFJ127 (SFJ127Q) /CSM/SF/SFJ1-B/SFJ127Q.Seq.d/                       1134   0.0
SFC108 (SFC108Q) /CSM/SF/SFC1-A/SFC108Q.Seq.d/                       1118   0.0
SFE544 (SFE544Q) /CSM/SF/SFE5-B/SFE544Q.Seq.d/                       1108   0.0
SHH313 (SHH313Q) /CSM/SH/SHH3-A/SHH313Q.Seq.d/                        791   0.0
CHP304 (CHP304Q) /CSM/CH/CHP3-A/CHP304Q.Seq.d/                        698   0.0
VHL232 (VHL232Q) /CSM/VH/VHL2-B/VHL232Q.Seq.d/                         44   0.005
VFM830 (VFM830Q) /CSM/VF/VFM8-B/VFM830Q.Seq.d/                         42   0.019
SSC425 (SSC425Q) /CSM/SS/SSC4-B/SSC425Q.Seq.d/                         42   0.019
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF482383|AF482383.1 Dictyostelium discoideum ABC transporter AbcG4 (abcG4) gene, complete cds.  1152   0.0    4
AF482386|AF482386.1 Dictyostelium discoideum ABC transporter AbcG7 (abcG7) gene, complete cds.    68   2e-28  6
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    48   3e-14  21
AF482387|AF482387.1 Dictyostelium discoideum ABC transporter AbcG12 (abcG12) and ABC transporter AbcG8 (abcG8) genes, complete cds.    48   9e-12  5
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    42   8e-10  23
AE014831|AE014831.1 Plasmodium falciparum 3D7 chromosome 10 section 3 of 7 of the complete sequence.    34   6e-09  18
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    42   8e-09  15
AF250284|AF250284.1 Amsacta moorei entomopoxvirus, complete genome.    34   1e-08  20
AE014825|AE014825.1 Plasmodium falciparum 3D7 chromosome 14 section 10 of 13 of the complete sequence.    32   1e-07  18
AE014016|AE014016.1 Buchnera aphidicola (Baizongia pistaciae), section 1 of 2 of the complete genome.    34   4e-07  17
dna update 2004. 1. 5
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF482386_1(AF482386|pid:none) Dictyostelium discoideum ABC trans...   180   2e-45
AF482387_2(AF482387|pid:none) Dictyostelium discoideum ABC trans...   173   1e-43
AF482384_1(AF482384|pid:none) Dictyostelium discoideum ABC trans...    72   2e-13
(Q54TV2) RecName: Full=ABC transporter G family member 5; AltNam...    72   3e-13
(Q54TV1) RecName: Full=ABC transporter G family member 6; AltNam...    72   3e-13
BC124086_1(BC124086|pid:none) Danio rerio ATP-binding cassette, ...    74   3e-13
CR388420_2(CR388420|pid:none) Zebrafish DNA sequence from clone ...    74   4e-13
CR382123_192(CR382123|pid:none) Kluyveromyces lactis strain NRRL...    73   6e-13
BC165778_1(BC165778|pid:none) Danio rerio ATP-binding cassette, ...    74   6e-13
DQ223860_1(DQ223860|pid:none) Danio rerio ATP-binding cassette t...    72   1e-12
protein update 2009. 5.26
PSORT 

 psg: 0.90  gvh: 0.51  alm: 0.46  top: 0.47  tms: 0.00  mit: 0.35  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: mitochondrial
	 32.0 %: nuclear
	 20.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: extracellular, including cell wall
	  4.0 %: peroxisomal

>> prediction for SFJ266 is mit
5' end seq. ID SFJ266F
5' end seq. 
>SFJ266F.Seq
CACTGTTGGCCTACTGGTAAGCTAAAATATAAAAAAATGCTATGCCAAATTGTTAAAATA
CCAATTGATTTATTATATTCCCAATTTTTTAAACCTAAAAATTCAATTAAATTATTACCA
TTCGAATAAAGACATGGTATTGGTGGTTGAGGACATTGAAATTCAAAATCTCTATATTGA
ATGATTACTATTGATGAGAAACCATAAAATAGATAATCAATATGATGAATCCAACCAAAA
CTATCAGGTAATGAATTAATTGGTACTAAAAATCCGGAGAATAATACCAATACTACTGAT
ACACCTGTACAATATGAAAATGTTAAATCAACAGTTCCAGCAATATTTGACATTGCTATT
ACCATAAAAACTGATGCTAAAAATACCATATAAAATGAAATCAATGATAATATATATGCT
TCAAATGACCATCGCANATGAACANTACANTNNATNATTGNNGNNNTANTNANTNCNNCN
NNNAANGNTGNTNCNNTNNNNTNNNCANNGNNNCTNTNNANNNNNGNNNNGNNNG-----
-----
Length of 5' end seq. 535
3' end seq. ID SFJ266Z
3' end seq. 
>SFJ266Z.Seq
----------AAATTTAATGAAGTTATAATAAAGAAAAATAAAGCTGATACTGATTGAGC
CTCATTTTGATCCAACCCATCATAACCAACTGTCCCAAAACATGCAGAGAACAATAATCC
AATTAATATTGCAATTACAATCTTTGAGAAAAACACTACCCTATTCCTCACAAAACTTTG
ATAACTTCTTTTTTGACAAACCCAATATTGATAAATGAAACCAACTCTCTTTGGTATATC
AATATTAATTGGATCATTGGAAATGGTTGGCTGTATTTCATGTTTCCAATATTTTTCCCA
TGTATCAACAGTTGTTGAATATTGAGATGGATTATTAACAATTTCATCACATACATCCAA
TATGAAATCAGCAGGATTCATTTGTGGTGGACATTTATAATTTGAATCTATACTTGAGAG
ATATTCTAAAATATTTGAACCACTATAAACCATTCTCCCTTTTAATACAACCATAATATT
ACTAAATAAATAAAAAATTTCAGGACGTGGTTGATGTACTGAGCATACAACTGTTACACC
TTTCATTTTAGTTAACTCTAATAAAACTTTCATTACTTTTAATGAATTTAAGAATCTAAA
CCACTTGTAGGTTCATCTAAAAAAATAAAGA
Length of 3' end seq. 621
Connected seq. ID SFJ266P
Connected seq. 
>SFJ266P.Seq
CACTGTTGGCCTACTGGTAAGCTAAAATATAAAAAAATGCTATGCCAAATTGTTAAAATA
CCAATTGATTTATTATATTCCCAATTTTTTAAACCTAAAAATTCAATTAAATTATTACCA
TTCGAATAAAGACATGGTATTGGTGGTTGAGGACATTGAAATTCAAAATCTCTATATTGA
ATGATTACTATTGATGAGAAACCATAAAATAGATAATCAATATGATGAATCCAACCAAAA
CTATCAGGTAATGAATTAATTGGTACTAAAAATCCGGAGAATAATACCAATACTACTGAT
ACACCTGTACAATATGAAAATGTTAAATCAACAGTTCCAGCAATATTTGACATTGCTATT
ACCATAAAAACTGATGCTAAAAATACCATATAAAATGAAATCAATGATAATATATATGCT
TCAAATGACCATCGCANATGAACANTACANTNNATNATTGNNGNNNTANTNANTNCNNCN
NNNAANGNTGNTNCNNTNNNNTNNNCANNGNNNCTNTNNANNNNNGNNNNGNNNG-----
-----AAATTTAATGAAGTTATAATAAAGAAAAATAAAGCTGATACTGATTGAGCCTCAT
TTTGATCCAACCCATCATAACCAACTGTCCCAAAACATGCAGAGAACAATAATCCAATTA
ATATTGCAATTACAATCTTTGAGAAAAACACTACCCTATTCCTCACAAAACTTTGATAAC
TTCTTTTTTGACAAACCCAATATTGATAAATGAAACCAACTCTCTTTGGTATATCAATAT
TAATTGGATCATTGGAAATGGTTGGCTGTATTTCATGTTTCCAATATTTTTCCCATGTAT
CAACAGTTGTTGAATATTGAGATGGATTATTAACAATTTCATCACATACATCCAATATGA
AATCAGCAGGATTCATTTGTGGTGGACATTTATAATTTGAATCTATACTTGAGAGATATT
CTAAAATATTTGAACCACTATAAACCATTCTCCCTTTTAATACAACCATAATATTACTAA
ATAAATAAAAAATTTCAGGACGTGGTTGATGTACTGAGCATACAACTGTTACACCTTTCA
TTTTAGTTAACTCTAATAAAACTTTCATTACTTTTAATGAATTTAAGAATCTAAACCACT
TGTAGGTTCATCTAAAAAAATAAAGA
Length of connected seq. 1156
Full length Seq ID -
Full length Seq. -
Length of full length seq. -