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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFJ254
Library SF
(Link to library)
Clone ID SFJ254
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16458-1
Original site URL
Representative seq. ID SFJ254P
(Link to Original site)
Representative DNA sequence 
>SFJ254 (SFJ254Q) /CSM/SF/SFJ2-C/SFJ254Q.Seq.d/
CTAATNAATAAAAAATGAATAAGAAATTAGAACAACTTGAAAAATTCAAAACAAATGATA
AGAATCCAGTTTATTCAACAACAAATACTGGTGTTTCTTTATCAGATGATGCAAATTCAT
TAAAAGCAGGTCCAAGAGGTCCAACTCTTTTGGAAGATTTTGTTTTAAGAGAAAAGATAA
CTCATTTTGGTCATGAAAGAATTCCAGAAAGAATTGTTCATGCAAGAGGAACAGGAGCTC
ATGGTTATTTTCTTTCTTATAAGGATCATAGTAAATTAACAAAAGCAGATTTCTTGAGTA
AACAAGATAAGAAAACACCAGTTTTCATTCGTATATCAACAGTTCAAGGACCAAGAGGAT
CAGCTGATACAGTTCGTGACGTTCATGGATTTGCTGTGAAATTCTATACTGACGAAGGTA
ATTATGATCTAGTTGGTAATAATATGCCAGTGTTTTTTATTCAAGATGCAAGTTCATTCC
CAGATTTTGTACATGCAGTAAAGATGGAACCACAGAATGAAATGCCAACTGGGGGAAGTG
CTCATGATACTTTTTATGATTTCTGTGGXXXXXXXXXXATATCTTGGTAAACATTGATTC
AGTACTCGCTGAAAAAGTTGCCAAGAATCTTGGTGTAAAGATTGAACCAACTTCAACCAA
ACCAATCAAGAAGATTATGGTAAAACCATCACCAGCTTTATCTCAACCAAATTTATTATC
TGGTGATATCGTTAGTCGTAGAATTTCAGTTATCATTGAAAAAGGTGTTGACTATGATGA
CGTTATCAATTTCAAAGATGATATGGAGAAAAGAGGTGCAATGGTAATGTTAGTCTCTTC
AACTTTGGCACAAGTAGAATGTAGTGGTGGTGAAATGTTATCTCCAAAAGGTACAATCAT
TGGTAACCCTTCCATTTTCTTTGATGCAGTCTATGTTCCAAAATCAACAGAAGAAGCCAC
TAAAATCCTCTCTGATGATGGTAATTTCCTTCATTACATTCTTGAAGCCTTTAAACATCT
CAAAACCATCGCATTTGGTGGTTCTGTATCGGTGATTAAAGAATTACTTCGTTTACCTCA
AGATCATGGTTTATTACTTGGTAATGGTTATAAAGATATCACTGAACAATTCTTTTATTC
ACTTGCTCATCATCGTGTTTGGGAAAGAGAATCAAAAGTTTCCAAAATTCCAGCCTAAAC
AAATTGTTTTACACTCACAATTCNA
sequence update 2001. 6. 1
Translated Amino Acid sequence 
nx*KMNKKLEQLEKFKTNDKNPVYSTTNTGVSLSDDANSLKAGPRGPTLLEDFVLREKIT
HFGHERIPERIVHARGTGAHGYFLSYKDHSKLTKADFLSKQDKKTPVFIRISTVQGPRGS
ADTVRDVHGFAVKFYTDEGNYDLVGNNMPVFFIQDASSFPDFVHAVKMEPQNEMPTGGSA
HDTFYDFC---

---ILVNIDSVLAEKVAKNLGVKIEPTSTKPIKKIMVKPSPALSQPNLLSGDIVSRRISV
IIEKGVDYDDVINFKDDMEKRGAMVMLVSSTLAQVECSGGEMLSPKGTIIGNPSIFFDAV
YVPKSTEEATKILSDDGNFLHYILEAFKHLKTIAFGGSVSVIKELLRLPQDHGLLLGNGY
KDITEQFFYSLAHHRVWERESKVSKIPA*tncftltix
Translated Amino Acid sequence (All Frames) 
Frame A:
lxnkk*irn*nnlknskqmiriqfiqqqilvflyqmmqih*kqvqevqlfwkilf*ekr*
lilvmkefqkelfmqeeqelmviffliriivn*qkqis*vnkirkhqfsfvyqqfkdqed
qliqfvtfmdll*nsiltkvimi*lviicqcflfkmqvhsqilymq*rwnhrmkcqlgev
lmilfmisv---

---isw*tliqyslkklprilv*rlnqlqpnqsrrlw*nhhqlylnqiyylvislvvefq
lslkkvltmmtlsiskmiwrkevqw*c*slqlwhk*nvvvvkcylqkvqslvtlpfslmq
smfqnqqkkplksslmmvisfitflkplniskpshlvvlyr*lknyfvylkimvyylvmv
ikislnnsfihlliivfgkenqkfpkfqpkqivlhsqf

Frame B:
*xikne*eirtt*kiqnk**esslfnnkywcffir*ckfiksrskrsnsfgrfcfkrkdn
sfws*knsrkncsckrnrsswlfsfl*gs**inksrfle*tr*entsfhsyinssrtkri
s*yss*rswicceily*rr*l*ssw**yasvfysrckfiprfctcskdgtte*nanwgkc
s*yfl*flw---

---ylgkh*fstr*kscqeswckd*tnfnqtnqedygktitsfistkfiiw*yr*s*nfs
yh*krc*l**ryqfqr*ygekrcngnvslfnfgtsrm*ww*nviskrynhw*pfhfl*cs
lcskinrrsh*npl**w*fpslhs*sl*tsqnhriwwfcigd*ritsftsrswfitw*wl
*ryh*tillftcsssclgkriksfqnsslnklfythns

Frame C:
nx*KMNKKLEQLEKFKTNDKNPVYSTTNTGVSLSDDANSLKAGPRGPTLLEDFVLREKIT
HFGHERIPERIVHARGTGAHGYFLSYKDHSKLTKADFLSKQDKKTPVFIRISTVQGPRGS
ADTVRDVHGFAVKFYTDEGNYDLVGNNMPVFFIQDASSFPDFVHAVKMEPQNEMPTGGSA
HDTFYDFC---

---ILVNIDSVLAEKVAKNLGVKIEPTSTKPIKKIMVKPSPALSQPNLLSGDIVSRRISV
IIEKGVDYDDVINFKDDMEKRGAMVMLVSSTLAQVECSGGEMLSPKGTIIGNPSIFFDAV
YVPKSTEEATKILSDDGNFLHYILEAFKHLKTIAFGGSVSVIKELLRLPQDHGLLLGNGY
KDITEQFFYSLAHHRVWERESKVSKIPA*tncftltix
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFJ254 (SFJ254Q) /CSM/SF/SFJ2-C/SFJ254Q.Seq.d/                       2359   0.0
SFK745 (SFK745Q) /CSM/SF/SFK7-B/SFK745Q.Seq.d/                       1271   0.0
AFE358 (AFE358Q) /CSM/AF/AFE3-C/AFE358Q.Seq.d/                       1271   0.0
CHB725 (CHB725Q) /CSM/CH/CHB7-B/CHB725Q.Seq.d/                       1267   0.0
CFI610 (CFI610Q) /CSM/CF/CFI6-A/CFI610Q.Seq.d/                       1267   0.0
CFH185 (CFH185Q) /CSM/CF/CFH1-D/CFH185Q.Seq.d/                       1267   0.0
AHH612 (AHH612Q) /CSM/AH/AHH6-A/AHH612Q.Seq.d/                       1267   0.0
SFD809 (SFD809Q) /CSM/SF/SFD8-A/SFD809Q.Seq.d/                       1265   0.0
CHI752 (CHI752Q) /CSM/CH/CHI7-C/CHI752Q.Seq.d/                       1265   0.0
AHM670 (AHM670Q) /CSM/AH/AHM6-C/AHM670Q.Seq.d/                       1265   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AY386221|AY386221.1 Dictyostelium discoideum catalase B gene, complete cds.  1271   0.0    4
AF183177|AF183177.1 Dictyostelium discoideum catalase B (catB) mRNA, partial cds.  1221   0.0    1
AE017000|AE017000.1 Bacillus cereus ATCC 14579 section 3 of 18 of the complete genome.    58   2e-11  13
AE017026|AE017026.1 Bacillus anthracis str. Ames section 3 of 18 of the complete genome.    58   7e-08  11
L02551|L02551.1 B.firmus catalase (katA) gene, 5' end.             50   2e-04  2
AJ456293|AJ456293.1 Gallus gallus EST, clone library riken1, clone 8c7r1.    42   3e-04  2
BU413226|BU413226.1 603157324F1 CSEQRBL05 Gallus gallus cDNA clone ChEST173p6 5', mRNA sequence.    42   3e-04  2
AJ448698|AJ448698.1 Gallus gallus EST, clone library riken1, clone 1j22r1.    42   3e-04  2
BU397102|BU397102.1 603536480F1 CSEQCHN58 Gallus gallus cDNA clone ChEST498p19 5', mRNA sequence.    42   3e-04  2
BU376635|BU376635.1 603589113F1 CSEQCHN74 Gallus gallus cDNA clone ChEST550i3 5', mRNA sequence.    42   3e-04  2
dna update 2004. 1. 5
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY386221_1(AY386221|pid:none) Dictyostelium discoideum catalase ...   402   e-110
(Q55DH8) RecName: Full=Catalase-B;          EC=1.11.1.6;              402   e-110
AF183177_1(AF183177|pid:none) Dictyostelium discoideum catalase ...   402   e-110
CP000949_5083(CP000949|pid:none) Pseudomonas putida W619, comple...   283   1e-74
CP000094_64(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, co...   280   5e-74
CP000076_74(CP000076|pid:none) Pseudomonas fluorescens Pf-5, com...   277   6e-73
CP000075_280(CP000075|pid:none) Pseudomonas syringae pv. syringa...   276   8e-73
(Q9I1W8) RecName: Full=Catalase HPII;          EC=1.11.1.6;  &AE...   276   1e-72
CP000438_2942(CP000438|pid:none) Pseudomonas aeruginosa UCBPP-PA...   276   1e-72
CP000712_130(CP000712|pid:none) Pseudomonas putida F1, complete ...   273   7e-72
protein update 2009. 5.26
PSORT 

 psg: 0.43  gvh: 0.39  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: cytoplasmic
	 20.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for SFJ254 is cyt
5' end seq. ID SFJ254F
5' end seq. 
>SFJ254F.Seq
CTAATNAATAAAAAATGAATAAGAAATTAGAACAACTTGAAAAATTCAAAACAAATGATA
AGAATCCAGTTTATTCAACAACAAATACTGGTGTTTCTTTATCAGATGATGCAAATTCAT
TAAAAGCAGGTCCAAGAGGTCCAACTCTTTTGGAAGATTTTGTTTTAAGAGAAAAGATAA
CTCATTTTGGTCATGAAAGAATTCCAGAAAGAATTGTTCATGCAAGAGGAACAGGAGCTC
ATGGTTATTTTCTTTCTTATAAGGATCATAGTAAATTAACAAAAGCAGATTTCTTGAGTA
AACAAGATAAGAAAACACCAGTTTTCATTCGTATATCAACAGTTCAAGGACCAAGAGGAT
CAGCTGATACAGTTCGTGACGTTCATGGATTTGCTGTGAAATTCTATACTGACGAAGGTA
ATTATGATCTAGTTGGTAATAATATGCCAGTGTTTTTTATTCAAGATGCAAGTTCATTCC
CAGATTTTGTACATGCAGTAAAGATGGAACCACAGAATGAAATGCCAACTGGGGGAAGTG
CTCATGATACTTTTTATGATTTCTGTGG----------
Length of 5' end seq. 568
3' end seq. ID SFJ254Z
3' end seq. 
>SFJ254Z.Seq
----------ATATCTTGGTAAACATTGATTCAGTACTCGCTGAAAAAGTTGCCAAGAAT
CTTGGTGTAAAGATTGAACCAACTTCAACCAAACCAATCAAGAAGATTATGGTAAAACCA
TCACCAGCTTTATCTCAACCAAATTTATTATCTGGTGATATCGTTAGTCGTAGAATTTCA
GTTATCATTGAAAAAGGTGTTGACTATGATGACGTTATCAATTTCAAAGATGATATGGAG
AAAAGAGGTGCAATGGTAATGTTAGTCTCTTCAACTTTGGCACAAGTAGAATGTAGTGGT
GGTGAAATGTTATCTCCAAAAGGTACAATCATTGGTAACCCTTCCATTTTCTTTGATGCA
GTCTATGTTCCAAAATCAACAGAAGAAGCCACTAAAATCCTCTCTGATGATGGTAATTTC
CTTCATTACATTCTTGAAGCCTTTAAACATCTCAAAACCATCGCATTTGGTGGTTCTGTA
TCGGTGATTAAAGAATTACTTCGTTTACCTCAAGATCATGGTTTATTACTTGGTAATGGT
TATAAAGATATCACTGAACAATTCTTTTATTCACTTGCTCATCATCGTGTTTGGGAAAGA
GAATCAAAAGTTTCCAAAATTCCAGCCTAAACAAATTGTTTTACACTCACAATTCNA
Length of 3' end seq. 647
Connected seq. ID SFJ254P
Connected seq. 
>SFJ254P.Seq
CTAATNAATAAAAAATGAATAAGAAATTAGAACAACTTGAAAAATTCAAAACAAATGATA
AGAATCCAGTTTATTCAACAACAAATACTGGTGTTTCTTTATCAGATGATGCAAATTCAT
TAAAAGCAGGTCCAAGAGGTCCAACTCTTTTGGAAGATTTTGTTTTAAGAGAAAAGATAA
CTCATTTTGGTCATGAAAGAATTCCAGAAAGAATTGTTCATGCAAGAGGAACAGGAGCTC
ATGGTTATTTTCTTTCTTATAAGGATCATAGTAAATTAACAAAAGCAGATTTCTTGAGTA
AACAAGATAAGAAAACACCAGTTTTCATTCGTATATCAACAGTTCAAGGACCAAGAGGAT
CAGCTGATACAGTTCGTGACGTTCATGGATTTGCTGTGAAATTCTATACTGACGAAGGTA
ATTATGATCTAGTTGGTAATAATATGCCAGTGTTTTTTATTCAAGATGCAAGTTCATTCC
CAGATTTTGTACATGCAGTAAAGATGGAACCACAGAATGAAATGCCAACTGGGGGAAGTG
CTCATGATACTTTTTATGATTTCTGTGG----------ATATCTTGGTAAACATTGATTC
AGTACTCGCTGAAAAAGTTGCCAAGAATCTTGGTGTAAAGATTGAACCAACTTCAACCAA
ACCAATCAAGAAGATTATGGTAAAACCATCACCAGCTTTATCTCAACCAAATTTATTATC
TGGTGATATCGTTAGTCGTAGAATTTCAGTTATCATTGAAAAAGGTGTTGACTATGATGA
CGTTATCAATTTCAAAGATGATATGGAGAAAAGAGGTGCAATGGTAATGTTAGTCTCTTC
AACTTTGGCACAAGTAGAATGTAGTGGTGGTGAAATGTTATCTCCAAAAGGTACAATCAT
TGGTAACCCTTCCATTTTCTTTGATGCAGTCTATGTTCCAAAATCAACAGAAGAAGCCAC
TAAAATCCTCTCTGATGATGGTAATTTCCTTCATTACATTCTTGAAGCCTTTAAACATCT
CAAAACCATCGCATTTGGTGGTTCTGTATCGGTGATTAAAGAATTACTTCGTTTACCTCA
AGATCATGGTTTATTACTTGGTAATGGTTATAAAGATATCACTGAACAATTCTTTTATTC
ACTTGCTCATCATCGTGTTTGGGAAAGAGAATCAAAAGTTTCCAAAATTCCAGCCTAAAC
AAATTGTTTTACACTCACAATTCNA
Length of connected seq. 1215
Full length Seq ID -
Full length Seq. -
Length of full length seq. -