SFJ248
Library SF
(Link to library)
Clone ID SFJ248
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15009-1
Original site URL
Representative seq. ID SFJ248P
(Link to Original site)
Representative DNA sequence
>SFJ248 (SFJ248Q) /CSM/SF/SFJ2-B/SFJ248Q.Seq.d/
ATATATATACACACAACAATAAAGAAATAAAAGATGAAAAAAACGACATTTAGATTTTAT
CTTGTATTTTTATATGCAATATTAGTTTTATATATAGGTGGTATTGAAGATGCAATTTCA
AATGGTGGGGCGATGGGATATGAACAACCAAAAACAAACTTTTATAATGGTGGTAATGGT
AAAGCGGATTATAATGTTGAACATTTTTTCAGAGGTGAACATACAAATAATTGGGCACTT
TTAGTTTGCACATCAAGATTTTGGTTTAACTATAGACATATAGCAAATGTATTAGGTTTT
TATAGAACTGTTAAGAAATTAGGTATACCTGATTCACAAATTATATTAATGTTAGCAGAT
GATATGGCATGTAATCCTAGAAATTCATATGCTGGTAGTATATTCAATAATGAAAATCAT
AAATTGAATTTATATGGTGATAATATTGAAGTTGACTATAGAGGATATGAAGTTAATGTT
GAAAATTTCATTAGAGTGTTAACTGGTAGACATGAACCAGAGGTAGCACGTTCAAAGGGA
TTATTGACAGATGATAAAAGTAATATTTTAATTTTCTTAACTGGTCATGGTGGTGATGAA
TTTTTAAAATTTCAAGATAATGAAGAGATTTCAAGTCATGATTTAGCTGATGCTTTCAXX
XXXXXXXXGGTTGATACTTGTCAAGCTAATACATTATATACTCGTTTTAATTCTCCAAAT
ATTTTAGCAATTGGTTCAAGTAAATTTGGTGAAAATAGTTATTCTCATCATTCAGATCCA
GAATTAGGGGTTGCAGTTATTGATAGATTTACATATTATACATTGGAATTCTTTGAAAGT
GTTGACCCACATAATGTAACATTATATCAATTGTTCAATACATATAGTCCACAAAAATTA
CAATCACATAGTGAATATAGGACAGATTTATTCAATAGACCATTAGATCAAGTTCCTGTT
ACAGACTTTTTTGGTTCTGTAATGAGAGCTGATTTAACTCCTTCAACAATTGTAAATGAA
AAACAAAAAGATGAAAAAGTAGAAAAAGATGAAACTACTGTAAATAATAATAATAATAAT
AATAACAACGATAATGTAAAAAAACAAACACCAAAACTAAACAAATTTCATATAGAATTA
CAGAGAAACCAACATCAATCCAAGTACAAAATAACAAAGATAGTGAATTAAATCTTTTCA
ATTCAAAATTTATTACTTCAGCTTTAATATTTTTAGTAGTATTTGGATTACTTTCTTGGT
CTTCTGATTTTGTAAAATCAAATCTTATTTTAAATACAAATNATTTAAAAGATCTNAAAT
CAAAATCAAAGCAAATTTAAGTAATATATAAATAAATAAATAATAAATAA
sequence update 2001. 6. 1
Translated Amino Acid sequence
iyihttikk*KMKKTTFRFYLVFLYAILVLYIGGIEDAISNGGAMGYEQPKTNFYNGGNG
KADYNVEHFFRGEHTNNWALLVCTSRFWFNYRHIANVLGFYRTVKKLGIPDSQIILMLAD
DMACNPRNSYAGSIFNNENHKLNLYGDNIEVDYRGYEVNVENFIRVLTGRHEPEVARSKG
LLTDDKSNILIFLTGHGGDEFLKFQDNEEISSHDLADAF---

---VDTCQANTLYTRFNSPNILAIGSSKFGENSYSHHSDPELGVAVIDRFTYYTLEFFES
VDPHNVTLYQLFNTYSPQKLQSHSEYRTDLFNRPLDQVPVTDFFGSVMRADLTPSTIVNE
KQKDEKVEKDETTVNNNNNNNNNDNVKKQTPKLNKFHIELQRNQHQSKYKITKIVN*ifs
iqnlllql*yf**yldyflgllil*nqilf*iqxi*kixnqnqskfk*yink*iin


Translated Amino Acid sequence (All Frames)
Frame A:
iyihttikk*KMKKTTFRFYLVFLYAILVLYIGGIEDAISNGGAMGYEQPKTNFYNGGNG
KADYNVEHFFRGEHTNNWALLVCTSRFWFNYRHIANVLGFYRTVKKLGIPDSQIILMLAD
DMACNPRNSYAGSIFNNENHKLNLYGDNIEVDYRGYEVNVENFIRVLTGRHEPEVARSKG
LLTDDKSNILIFLTGHGGDEFLKFQDNEEISSHDLADAF---

---g*ylss*yiiysf*fskyfsnwfk*iw*k*lfssfrsrirgcsy**iyilyigil*k
c*pt*cniisivqyi*stkitit**i*drfiq*tirssscyrlfwfcnes*fnsfnnck*
ktkr*ksrkr*nyck*******qr*ckktntktkqisyritekptsiqvqnnkdselnlf
nskfitsaliflvvfgllswssdfvksnlilntnxlkdlkskskqi*viyk*innk*

Frame B:
yiytqq*rnkr*kkrhldfilyfymqy*fyi*vvlkmqfqmvgrwdmnnqkqtfimvvmv
kriimlnifsevniqiighf*fahqdfgltidi*qmy*vfiellrn*vylihkly*c*qm
iwhvileihmlvvysimkiin*iymviilkltiedmklmlkislec*lvdmnqr*hvqrd
y*qmikvif*fs*lvmvvmnf*nfkimkrfqvmi*lmls---

---VDTCQANTLYTRFNSPNILAIGSSKFGENSYSHHSDPELGVAVIDRFTYYTLEFFES
VDPHNVTLYQLFNTYSPQKLQSHSEYRTDLFNRPLDQVPVTDFFGSVMRADLTPSTIVNE
KQKDEKVEKDETTVNNNNNNNNNDNVKKQTPKLNKFHIELQRNQHQSKYKITKIVN*ifs
iqnlllql*yf**yldyflgllil*nqilf*iqxi*kixnqnqskfk*yink*iin

Frame C:
iythnnkeikdekndi*ilscificnisfiyrwy*rcnfkwwgdgi*ttknkll*ww*w*
sgl*c*tffqr*tyk*lgtfslhikilv*l*tyskcirfl*nc*eiryt*ftnyinvsr*
ygm*s*kficw*yiq**ks*iefiw**y*s*l*ri*s*c*kfh*svnw*t*trgstfkgi
idr**k*yfnflnwsww**ifkisr**rdfks*fs*cf---

---lilvklihyilvlilqif*qlvqvnlvkiviliiqiqn*glqllidlhiihwnslkv
lthim*hyincsihivhknynhivnigqiysidh*ikfllqtflvl**eli*llqql*mk
nkkmkk*kkmkll*iiiiiiittim*knkhqn*tnfi*nyretninpstk*qr**iksfq
fkiyyfsfnifssiwitflvf*fckiksyfkykxfkrsxikikanlsni*ink**i

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SFJ248 (SFJ248Q) /CSM/SF/SFJ2-B/SFJ248Q.Seq.d/ 1905 0.0
AFJ746 (AFJ746Q) /CSM/AF/AFJ7-B/AFJ746Q.Seq.d/ 1255 0.0
CFB364 (CFB364Q) /CSM/CF/CFB3-C/CFB364Q.Seq.d/ 1195 0.0
CFH296 (CFH296Q) /CSM/CF/CFH2-D/CFH296Q.Seq.d/ 1156 0.0
SFL282 (SFL282Q) /CSM/SF/SFL2-D/SFL282Q.Seq.d/ 1142 0.0
CFF820 (CFF820Q) /CSM/CF/CFF8-A/CFF820Q.Seq.d/ 1132 0.0
SFD257 (SFD257Q) /CSM/SF/SFD2-C/SFD257Q.Seq.d/ 1100 0.0
CFH352 (CFH352Q) /CSM/CF/CFH3-C/CFH352Q.Seq.d/ 936 0.0
CHD461 (CHD461Q) /CSM/CH/CHD4-C/CHD461Q.Seq.d/ 928 0.0
VFB704 (VFB704Q) /CSM/VF/VFB7-A/VFB704Q.Seq.d/ 765 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BI507800|BI507800.1 BB170001B10H11.5 Bee Brain Normalized/Subtracted Library, BB17 Apismellifera cDNA clone BB170001B10H11 5', mRNA sequence. 76 1e-34 6
BI515788|BI515788.1 BB160020B10A08 Bee Brain Normalized Library, BB16 Apis mellifera cDNA clone BB160020B10A08 5', mRNA sequence. 76 3e-28 5
BI515765|BI515765.1 BB160020A20B07 Bee Brain Normalized Library, BB16 Apis mellifera cDNA clone BB160020A20B07 5', mRNA sequence. 76 6e-24 4
BU835350|BU835350.1 T072G09 Populus apical shoot cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence. 42 6e-16 5
AX488980|AX488980.1 Sequence 6280 from Patent WO02053728. 52 4e-14 4
BU824990|BU824990.1 UK102C04 Populus apical shoot cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence. 40 3e-09 3
AW399139|AW399139.1 EST309639 L. pennellii trichome, Cornell University Lycopersicon pennellii cDNA clone cLPT6I10 5', mRNA sequence. 42 3e-09 6
CK160732|CK160732.1 FGAS042359 Triticum aestivum FGAS: TaLt5 Triticum aestivum cDNA, mRNA sequence. 46 3e-08 4
CK160515|CK160515.1 FGAS042107 Triticum aestivum FGAS: TaLt5 Triticum aestivum cDNA, mRNA sequence. 46 3e-08 4
CK159964|CK159964.1 FGAS041495 Triticum aestivum FGAS: TaLt5 Triticum aestivum cDNA, mRNA sequence. 46 3e-08 4
dna update 2004. 1. 5
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AK117596_1(AK117596|pid:none) Arabidopsis thaliana At1g08750 mRN... 363 7e-99
AY084883_1(AY084883|pid:none) Arabidopsis thaliana clone 120167 ... 363 7e-99
CR382132_329(CR382132|pid:none) Yarrowia lipolytica strain CLIB1... 352 2e-95
(P49018) RecName: Full=GPI-anchor transamidase; Short=G... 343 6e-93
CP000500_66(CP000500|pid:none) Pichia stipitis CBS 6054 chromoso... 342 2e-92
CR382138_1120(CR382138|pid:none) Debaryomyces hansenii strain CB... 342 2e-92
CR382138_1225(CR382138|pid:none) Debaryomyces hansenii chromosom... 340 7e-92
FM992688_685(FM992688|pid:none) Candida dubliniensis CD36 chromo... 339 2e-91
AE016817_700(AE016817|pid:none) Ashbya gossypii (= Eremothecium ... 335 3e-90
CR860289_1(CR860289|pid:none) Pongo abelii mRNA; cDNA DKFZp459A1... 328 3e-88
protein update 2009. 5.26
PSORT

psg: 0.95 gvh: 0.58 alm: 0.24 top: 0.00 tms: 0.07 mit: 0.37 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: cytoplasmic
20.0 %: mitochondrial
20.0 %: endoplasmic reticulum
16.0 %: nuclear
12.0 %: Golgi
4.0 %: extracellular, including cell wall
4.0 %: plasma membrane

>> prediction for SFJ248 is cyt

5' end seq. ID SFJ248F
5' end seq.
>SFJ248F.Seq
ATATATATACACACAACAATAAAGAAATAAAAGATGAAAAAAACGACATTTAGATTTTAT
CTTGTATTTTTATATGCAATATTAGTTTTATATATAGGTGGTATTGAAGATGCAATTTCA
AATGGTGGGGCGATGGGATATGAACAACCAAAAACAAACTTTTATAATGGTGGTAATGGT
AAAGCGGATTATAATGTTGAACATTTTTTCAGAGGTGAACATACAAATAATTGGGCACTT
TTAGTTTGCACATCAAGATTTTGGTTTAACTATAGACATATAGCAAATGTATTAGGTTTT
TATAGAACTGTTAAGAAATTAGGTATACCTGATTCACAAATTATATTAATGTTAGCAGAT
GATATGGCATGTAATCCTAGAAATTCATATGCTGGTAGTATATTCAATAATGAAAATCAT
AAATTGAATTTATATGGTGATAATATTGAAGTTGACTATAGAGGATATGAAGTTAATGTT
GAAAATTTCATTAGAGTGTTAACTGGTAGACATGAACCAGAGGTAGCACGTTCAAAGGGA
TTATTGACAGATGATAAAAGTAATATTTTAATTTTCTTAACTGGTCATGGTGGTGATGAA
TTTTTAAAATTTCAAGATAATGAAGAGATTTCAAGTCATGATTTAGCTGATGCTTTCA--
--------
Length of 5' end seq. 658
3' end seq. ID SFJ248Z
3' end seq.
>SFJ248Z.Seq
----------GGTTGATACTTGTCAAGCTAATACATTATATACTCGTTTTAATTCTCCAA
ATATTTTAGCAATTGGTTCAAGTAAATTTGGTGAAAATAGTTATTCTCATCATTCAGATC
CAGAATTAGGGGTTGCAGTTATTGATAGATTTACATATTATACATTGGAATTCTTTGAAA
GTGTTGACCCACATAATGTAACATTATATCAATTGTTCAATACATATAGTCCACAAAAAT
TACAATCACATAGTGAATATAGGACAGATTTATTCAATAGACCATTAGATCAAGTTCCTG
TTACAGACTTTTTTGGTTCTGTAATGAGAGCTGATTTAACTCCTTCAACAATTGTAAATG
AAAAACAAAAAGATGAAAAAGTAGAAAAAGATGAAACTACTGTAAATAATAATAATAATA
ATAATAACAACGATAATGTAAAAAAACAAACACCAAAACTAAACAAATTTCATATAGAAT
TACAGAGAAACCAACATCAATCCAAGTACAAAATAACAAAGATAGTGAATTAAATCTTTT
CAATTCAAAATTTATTACTTCAGCTTTAATATTTTTAGTAGTATTTGGATTACTTTCTTG
GTCTTCTGATTTTGTAAAATCAAATCTTATTTTAAATACAAATNATTTAAAAGATCTNAA
ATCAAAATCAAAGCAAATTTAAGTAATATATAAATAAATAAATAATAAATAA
Length of 3' end seq. 702
Connected seq. ID SFJ248P
Connected seq.
>SFJ248P.Seq
ATATATATACACACAACAATAAAGAAATAAAAGATGAAAAAAACGACATTTAGATTTTAT
CTTGTATTTTTATATGCAATATTAGTTTTATATATAGGTGGTATTGAAGATGCAATTTCA
AATGGTGGGGCGATGGGATATGAACAACCAAAAACAAACTTTTATAATGGTGGTAATGGT
AAAGCGGATTATAATGTTGAACATTTTTTCAGAGGTGAACATACAAATAATTGGGCACTT
TTAGTTTGCACATCAAGATTTTGGTTTAACTATAGACATATAGCAAATGTATTAGGTTTT
TATAGAACTGTTAAGAAATTAGGTATACCTGATTCACAAATTATATTAATGTTAGCAGAT
GATATGGCATGTAATCCTAGAAATTCATATGCTGGTAGTATATTCAATAATGAAAATCAT
AAATTGAATTTATATGGTGATAATATTGAAGTTGACTATAGAGGATATGAAGTTAATGTT
GAAAATTTCATTAGAGTGTTAACTGGTAGACATGAACCAGAGGTAGCACGTTCAAAGGGA
TTATTGACAGATGATAAAAGTAATATTTTAATTTTCTTAACTGGTCATGGTGGTGATGAA
TTTTTAAAATTTCAAGATAATGAAGAGATTTCAAGTCATGATTTAGCTGATGCTTTCA--
--------GGTTGATACTTGTCAAGCTAATACATTATATACTCGTTTTAATTCTCCAAAT
ATTTTAGCAATTGGTTCAAGTAAATTTGGTGAAAATAGTTATTCTCATCATTCAGATCCA
GAATTAGGGGTTGCAGTTATTGATAGATTTACATATTATACATTGGAATTCTTTGAAAGT
GTTGACCCACATAATGTAACATTATATCAATTGTTCAATACATATAGTCCACAAAAATTA
CAATCACATAGTGAATATAGGACAGATTTATTCAATAGACCATTAGATCAAGTTCCTGTT
ACAGACTTTTTTGGTTCTGTAATGAGAGCTGATTTAACTCCTTCAACAATTGTAAATGAA
AAACAAAAAGATGAAAAAGTAGAAAAAGATGAAACTACTGTAAATAATAATAATAATAAT
AATAACAACGATAATGTAAAAAAACAAACACCAAAACTAAACAAATTTCATATAGAATTA
CAGAGAAACCAACATCAATCCAAGTACAAAATAACAAAGATAGTGAATTAAATCTTTTCA
ATTCAAAATTTATTACTTCAGCTTTAATATTTTTAGTAGTATTTGGATTACTTTCTTGGT
CTTCTGATTTTGTAAAATCAAATCTTATTTTAAATACAAATNATTTAAAAGATCTNAAAT
CAAAATCAAAGCAAATTTAAGTAATATATAAATAAATAAATAATAAATAA
Length of connected seq. 1360
Full length Seq ID -
Full length Seq. -
Length of full length seq. -