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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SFJ247
Library SF
(Link to library)
Clone ID SFJ247
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16560-1
Original site URL
Representative seq. ID SFJ247Z
(Link to Original site)
Representative DNA sequence 
>SFJ247 (SFJ247Q) /CSM/SF/SFJ2-B/SFJ247Q.Seq.d/
XXXXXXXXXXAAATGTAAANCCAANATCCAANANAAANAAGGTTTCCCCCAGATCACAAC
GTTTTATTTTGGTGGTAACCATTTAAANATGGTGGTACTCTTTCCGACTATAACATTCAA
AAGGAATCCNCTTTCCACTTAGTTTTAANATTAANAGGTGGTATGCAAATNTTTGTTAAA
ACTCTCACTGGTAAACCAATCACTTTANAAGTTGAAGGTTCTGATAACATTGAAAATGTA
AAGGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTTGCT
GGTAAACAATTGGAAGATGGTCGTACTCTCTCTGACTATAACATTCAAAAGGAATCAACT
CTTCACTTAGTTTTAAGATTAAGAGGTGGTATGCAAATCTTTGTTAAAACTCTCACTGGT
AAAACTATCACTTTGGAAGTTGAAGGTTCTGATAATATTGAAAATGTAAAGGCTAAAATC
CAAGATAAAGAAGGTATTCCACCAGATCAACAAAGATTAATNTTTGCCGGTAAACAATTA
GAAGATGGTCGTACTCTTTCTGACTACAATATTCAAAAAGAATCCACTCTCCATTTAGTT
TTAAGATTAAGAGGTGGTATGCAAATCTTTGTTAAAACTCTCACTGGTAAAACAATCACT
TTAGAAGTTGAAGGTTCTGATAACATTGAAAATGTTAAAGCCAAGATCCAAGATAAAGAA
GGTATTCCACCAGATCAACAAAGATTAATCT
sequence update 2001. 6. 1
Translated Amino Acid sequence 
---m*xqxpxxxrfppdhnvlfww*PFKXGGTLSDYNIQKESXFHLVLXLXGGMQXFVKT
LTGKPITLXVEGSDNIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL
HLVLRLRGGMQIFVKTLTGKTITLEVEGSDNIENVKAKIQDKEGIPPDQQRLXFAGKQLE
DGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEGSDNIENVKAKIQDKEG
IPPDQQRLI
Translated Amino Acid sequence (All Frames) 
Frame A:
---nvxpxsxxxkvsprsqrfilvvti*xwwysfrl*hskgixfplsfxixrwyanxc*n
shw*tnhfxs*rf**h*kckg*nsr*rrystrsttshfcw*tigrwsysl*l*hskgins
slsfkikrwyanlc*nshw*nyhfgs*rf**y*kckg*npr*rrystrstkinxcr*tir
rwsysf*lqyskrihspfsfkikrwyanlc*nshw*nnhfrs*rf**h*kc*sqdpr*rr
ystrstkin


Frame B:
---m*xqxpxxxrfppdhnvlfww*PFKXGGTLSDYNIQKESXFHLVLXLXGGMQXFVKT
LTGKPITLXVEGSDNIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL
HLVLRLRGGMQIFVKTLTGKTITLEVEGSDNIENVKAKIQDKEGIPPDQQRLXFAGKQLE
DGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEGSDNIENVKAKIQDKEG
IPPDQQRLI


Frame C:
---ckxxiqxkxgfpqittfyfggnhlxmvvlfptitfkrnplst*f*x*xvvckxllkl
slvnqslxklkvlitlkm*rlkfkikkvfhqinnvsfllvnnwkmvvlsltitfkrnqlf
t*f*d*evvcksllklslvklslwklkvliilkm*rlkskikkvfhqinkd*xlpvnn*k
mvvlflttifkknplsi*f*d*evvcksllklslvkqsl*klkvlitlkmlkprskikkv
fhqinkd*s
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFJ247 (SFJ247Q) /CSM/SF/SFJ2-B/SFJ247Q.Seq.d/                       1398   0.0
AFK196 (AFK196Q) /CSM/AF/AFK1-D/AFK196Q.Seq.d/                       1283   0.0
SFD810 (SFD810Q) /CSM/SF/SFD8-A/SFD810Q.Seq.d/                       1281   0.0
SFJ820 (SFJ820Q) /CSM/SF/SFJ8-A/SFJ820Q.Seq.d/                       1277   0.0
SFJ463 (SFJ463Q) /CSM/SF/SFJ4-C/SFJ463Q.Seq.d/                       1275   0.0
AFK824 (AFK824Q) /CSM/AF/AFK8-A/AFK824Q.Seq.d/                       1271   0.0
AFD362 (AFD362Q) /CSM/AF/AFD3-C/AFD362Q.Seq.d/                       1271   0.0
AFK605 (AFK605Q) /CSM/AF/AFK6-A/AFK605Q.Seq.d/                       1269   0.0
SFE394 (SFE394Q) /CSM/SF/SFE3-D/SFE394Q.Seq.d/                       1267   0.0
CHD878 (CHD878Q) /CSM/CH/CHD8-D/CHD878Q.Seq.d/                       1267   0.0
own update 2004.12.25
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

M23754|M23754.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB2.  1255   0.0    3
M23751|M23751.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB18.   926   0.0    2
M23752|M23752.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB17.   926   0.0    1
M19492|M19492.1 Slime mold (D.discoideum) ubiquitin lambda-229 gene, complete cds.   737   0.0    2
M23753|M23753.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB14.   807   0.0    2
M19491|M19491.1 Slime mold (D.discoideum) ubiquitin p229C/pLK229 gene, complete cds.   559   e-176  3
M19666|M19666.1 Slime mold (D.discoideum) ubiquitin gene, 3' end, clone p229C.   559   e-176  3
M23748|M23748.1 D.discoideum ubiquitin mRNA, complete cds, clone DCUB19.   559   e-176  3
CF181989|CF181989.1 ISO4G3F Iso cDNA Isotricha sp. BBF-2003 cDNA similar to ubiquitin, mRNA sequence.   442   e-153  3
CF181994|CF181994.1 ISO4G8F Iso cDNA Isotricha sp. BBF-2003 cDNA similar to ubiquitin, mRNA sequence.   442   e-153  3
dna update 2004. 1. 5
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M23754_1(M23754|pid:none) D.discoideum ubiquitin mRNA, complete ...   412   e-114
A27806(A27806) polyubiquitin 5 (clone pLK229) - slime mold (Dict...   409   e-113
M19666_1(M19666|pid:none) Slime mold (D.discoideum) ubiquitin ge...   409   e-113
B34080(B34080)polyubiquitin 5 (clone DCUB19) - slime mold (Dicty...   409   e-113
AB021974_1(AB021974|pid:none) Bombyx mori UBI3 mRNA for polyubiq...   398   e-109
Y12081_1(Y12081|pid:none) Suberites domuncula mRNA for polyubiqu...   398   e-109
S32020(S32020) polyubiquitin 6 - Geodia cydonium  &X70917_1(X709...   398   e-109
T16144(T16144) ubiquitin - Caenorhabditis elegans  &U23172_1(U23...   398   e-109
BC168051_1(BC168051|pid:none) Xenopus tropicalis cDNA clone MGC:...   395   e-109
AK010964_1(AK010964|pid:none) Mus musculus 13 days embryo liver ...   395   e-109
protein update 2009. 5.26
PSORT 

 psg: 0.52  gvh: 0.57  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 1.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 40.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: endoplasmic reticulum

>> prediction for SFJ247 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SFJ247Z
3' end seq. 
>SFJ247Z.Seq
----------AAATGTAAANCCAANATCCAANANAAANAAGGTTTCCCCCAGATCACAAC
GTTTTATTTTGGTGGTAACCATTTAAANATGGTGGTACTCTTTCCGACTATAACATTCAA
AAGGAATCCNCTTTCCACTTAGTTTTAANATTAANAGGTGGTATGCAAATNTTTGTTAAA
ACTCTCACTGGTAAACCAATCACTTTANAAGTTGAAGGTTCTGATAACATTGAAAATGTA
AAGGCTAAAATTCAAGATAAAGAAGGTATTCCACCAGATCAACAACGTCTCATTTTTGCT
GGTAAACAATTGGAAGATGGTCGTACTCTCTCTGACTATAACATTCAAAAGGAATCAACT
CTTCACTTAGTTTTAAGATTAAGAGGTGGTATGCAAATCTTTGTTAAAACTCTCACTGGT
AAAACTATCACTTTGGAAGTTGAAGGTTCTGATAATATTGAAAATGTAAAGGCTAAAATC
CAAGATAAAGAAGGTATTCCACCAGATCAACAAAGATTAATNTTTGCCGGTAAACAATTA
GAAGATGGTCGTACTCTTTCTGACTACAATATTCAAAAAGAATCCACTCTCCATTTAGTT
TTAAGATTAAGAGGTGGTATGCAAATCTTTGTTAAAACTCTCACTGGTAAAACAATCACT
TTAGAAGTTGAAGGTTCTGATAACATTGAAAATGTTAAAGCCAAGATCCAAGATAAAGAA
GGTATTCCACCAGATCAACAAAGATTAATCT
Length of 3' end seq. 741
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -