>SFJ246 (SFJ246Q) /CSM/SF/SFJ2-B/SFJ246Q.Seq.d/
TTATATTGTAATAATTTTTTGTAGTAGTATCCAATTTTCTTTTGGATACGAAAAGGCGAT
TGCTTCATTTTATCCACCTCCAGGTGATTTGCATCCCACTACTCATAATTTTTGGGCATG
TAATAGTGTCATTAACCAAAACGGTGGATTCGGTCCACTTGAATGCAATAATGCCGGTAT
CTATGCAATTTTCTCGACCGCCAATGAGATCATCGACGGTAATGAATACATGCTTCCACT
ATTTTATATTGGAAGATCCACTATAGATGTTCGAGATAGAATTGCTGATCACAGTAGACG
AAACCATGTTGATAATGATTTCATTGTGTGTTATATGCGTTTCCCAGCATTGGATGATTA
TGGTTACAGTAACAAAGTAACACCCGTTGAACAAGCTCTCCTTCACCAATTCAAAACTCA
ATTCAACTCATGGGATAACCCTCGGTTTTGATCCACAGTATGATACTGCTTATCCAGATG
AAAATGGTTTGGGATGGGATATCCTTGCATCTTTTTATAATATGGATATCAATGCTCCAT
CTTTTAATATTGAAAAAGAGCCAGGCTTTGTATGGAATGGTCAAACTAATGGACATACTG
GAACGGTTTCGTCCAATCATCATTAAAAGCTGATCAATCTGAAATATTXXXXXXXXXXAA
TCAAAATCAAAATCAAAATCAAAATCAAAATCAAAATCAAAATCAAAATCAAAATCAAAA
TCAAAATCAAAATCATAATCAGAATCAAAATCCACATTCAAACTTTCAGGTTTCTAATGA
TCAATTAATTGCTATAGATGTTGGTATTGCAGGTGGTGCTATCGTTGCAGGCGCTGGTGC
AGCAGCAGCCGGTGCAGCAGCCGGTGCTGAGGGTGGTGCCGCAGGAGTTGCTTCCAGAGC
TGGTGGTTATATTTCTCGTACTGCTAGTCGTGTTGGTAACTCTATACGTAGCAGAGCTAC
TCGTTATGCTAATCAAGGTTACAATTCCATGAGAAATGGTGCACAAAGAGCTGGCAACGG
CGCACGTAATTATGCTAATGAAGGTTACAATTCCGTGAGAGATGGTGCACAAAGAGCTGG
CAACGGCGCACGTAATTATGCTCAACAAGGTTATCAAGCATGGAGAGAAGGTGTCAATGA
GATTGGTGATGATATCGCCAATACTGCACATGATGTAGGTGATGGTTTCGCCAATACTGC
ACGTGAAGTAGGTGATGGAATTAGAATCACTGCAGAGGAGGGATATGAACTCATTAAAGA
TGGAGCTGAAGAAACTTGGGTGAAGAAATATTAAAGGTTATCCTAATTAAAATTAAAAAA
GCACAACAAAGAA

yiviifcssiqfsfgyekaiasfypppgdlhptthnfwacnsvinqnggfgplecnnagi
yaifstaneiidgneymlplfyigrstidvrdriadhsrrnhvdndfivcymrfpalddy
gysnkvtpveqallhqfktqfnswdnprf*stv*yclsr*kwfgmgypcifl*ygyqcsi
f*y*krarlcmewsn*WTYWNGFVQSSLKADQSEI---

---NQNQNQNQNQNQNQNQNQNQNQNQNHNQNQNPHSNFQVSNDQLIAIDVGIAGGAIVA
GAGAAAAGAAAGAEGGAAGVASRAGGYISRTASRVGNSIRSRATRYANQGYNSMRNGAQR
AGNGARNYANEGYNSVRDGAQRAGNGARNYAQQGYQAWREGVNEIGDDIANTAHDVGDGF
ANTAREVGDGIRITAEEGYELIKDGAEETWVKKY*rls*lklkkhnke

Frame A:
lycnnfl**ypiffwirkgdcfilstsr*fashys*flgm**ch*pkrwirst*mq*cry
lcnfldrq*dhrr**ihastilywkihyrcsr*nc*sq*tkpc***fhcvlyafpsig*l
wlq*qsntr*tsspspiqnsiqlmg*psvlihsmilliqmkmvwdgislhlfiiwismlh
llilkksqalygmvklmdilerfrpiiiks*si*ni---

---NQNQNQNQNQNQNQNQNQNQNQNQNHNQNQNPHSNFQVSNDQLIAIDVGIAGGAIVA
GAGAAAAGAAAGAEGGAAGVASRAGGYISRTASRVGNSIRSRATRYANQGYNSMRNGAQR
AGNGARNYANEGYNSVRDGAQRAGNGARNYAQQGYQAWREGVNEIGDDIANTAHDVGDGF
ANTAREVGDGIRITAEEGYELIKDGAEETWVKKY*rls*lklkkhnke

Frame B:
yiviifcssiqfsfgyekaiasfypppgdlhptthnfwacnsvinqnggfgplecnnagi
yaifstaneiidgneymlplfyigrstidvrdriadhsrrnhvdndfivcymrfpalddy
gysnkvtpveqallhqfktqfnswdnprf*stv*yclsr*kwfgmgypcifl*ygyqcsi
f*y*krarlcmewsn*WTYWNGFVQSSLKADQSEI---

---ikikikikikikikikikikikikiiirikihiqtfrflmin*ll*mlvlqvvlslq
alvqqqpvqqpvlrvvpqellpelvviflvllvvlvtlyvaellvmlikvtip*emvhke
latahvimlmkvtip*emvhkelatahvimlnkvikhgekvsmrlvmispilhmm*vmvs
pilhvk*vmeleslqrrdmnslkmelkklg*rnikgypn*n*ksttk

Frame C:
il**ffvvvsnflldtkrrllhfihlqviciplliifghvivsltktvdsvhlnaimpvs
mqfsrppmrsstvmntcfhyfiledpl*mfeiellitvdetmlimislcvicvsqhwmim
vtvtk*hplnklsftnsklnsthgitlgfdpqydtaypdenglgwdilasfynmdinaps
fniekepgfvwngqtnghtgtvssnhh*klinlky---

---sksksksksksksksksksksksks*seskstfklsgf**sincyrcwycrwcyrcr
rwcsssrcssrc*gwcrrscfqswwlyfsyc*scw*lyt*qsyslc*srlqfhekwctks
wqrrt*lc**rlqfrerwctkswqrrt*lcstrlssmerrcq*dw**yrqyct*cr*wfr
qyct*sr*wn*nhcrggi*th*rws*rnlgeeilkvilikikkaqqr

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFJ246 (SFJ246Q) /CSM/SF/SFJ2-B/SFJ246Q.Seq.d/                       1285   0.0
CFI501 (CFI501Q) /CSM/CF/CFI5-A/CFI501Q.Seq.d/                       1259   0.0
CFG235 (CFG235Q) /CSM/CF/CFG2-B/CFG235Q.Seq.d/                       1249   0.0
SFB867 (SFB867Q) /CSM/SF/SFB8-C/SFB867Q.Seq.d/                       1239   0.0
CFD541 (CFD541Q) /CSM/CF/CFD5-B/CFD541Q.Seq.d/                       1239   0.0
CHP572 (CHP572Q) /CSM/CH/CHP5-C/CHP572Q.Seq.d/                       1237   0.0
CHC811 (CHC811Q) /CSM/CH/CHC8-A/CHC811Q.Seq.d/                       1235   0.0
SFE811 (SFE811Q) /CSM/SF/SFE8-A/SFE811Q.Seq.d/                       1233   0.0
CFA620 (CFA620Q) /CSM/CF/CFA6-A/CFA620Q.Seq.d/                       1233   0.0
SFH473 (SFH473Q) /CSM/SF/SFH4-D/SFH473Q.Seq.d/                       1231   0.0

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AE017027|AE017027.1 Bacillus anthracis str. Ames section 4 of 18 of the complete genome.    36   0.047  2
AC116982|AC116982.2 Dictyostelium discoideum chromosome 2 map 3622643-3879522 strain AX4, complete sequence.    38   0.19   12
BE737326|BE737326.1 601305982F1 NIH_MGC_39 Homo sapiens cDNA clone IMAGE:3640269 5', mRNA sequence.    48   0.32   1
AP003190|AP003190.2 Clostridium perfringens str. 13 DNA, complete genome, section 6/10.    36   0.62   2
AC023514|AC023514.2 Homo sapiens chromosome 3 clone RP11-137G22 map 3p, complete sequence.    32   0.66   10
AC066606|AC066606.7 Homo sapiens chromosome 3 clone RP11-74E4 map 3p, complete sequence.    32   0.94   10
AC004890|AC004890.2 Homo sapiens PAC clone RP4-800G7 from 7q35-q36, complete sequence.    46   1.3    1
AC117656|AC117656.12 Mus musculus chromosome 14 clone RP23-298L3 map 14, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.    46   1.3    1
CA278120|CA278120.1 SCBFSD2035F06.g SD2 Saccharum officinarum cDNA clone SCBFSD2035F06 5', mRNA sequence.    46   1.3    1
CA148884|CA148884.1 SCJLRZ1020C04.b RZ1 Saccharum officinarum cDNA clone SCJLRZ1020C04 3', mRNA sequence.    46   1.3    1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ628940_1(AJ628940|pid:none) Pisum sativum mRNA for late embryo...    51   1e-04
Z69360_4(Z69360|pid:none) Caenorhabditis elegans Cosmid F25H8, c...    49   5e-04
AC146855_28(AC146855|pid:none) Medicago truncatula clone mth2-16...    49   5e-04
Z69360_3(Z69360|pid:none) Caenorhabditis elegans Cosmid F25H8, c...    49   5e-04
AM421808_498(AM421808|pid:none) Neisseria meningitidis serogroup...    49   5e-04
T21369(T21369)hypothetical protein F25H8.5a - Caenorhabditis ele...    47   0.002
AL844509_662(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    46   0.003
CT573213_2889(CT573213|pid:none) Frankia alni str. ACN14A chromo...    44   0.010
AB207257_1(AB207257|pid:none) Polypedilum vanderplanki PvLEA3 mR...    42   0.037
BT050559_1(BT050559|pid:none) Drosophila melanogaster AT13054 fu...    42   0.048

 psg: 0.82  gvh: 0.38  alm: 0.29  top: 0.63  tms: 0.07  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 28.0 %: cytoplasmic
	 24.0 %: mitochondrial
	 24.0 %: nuclear
	  8.0 %: plasma membrane
	  8.0 %: endoplasmic reticulum
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for SFJ246 is cyt

>SFJ246F.Seq
TTATATTGTAATAATTTTTTGTAGTAGTATCCAATTTTCTTTTGGATACGAAAAGGCGAT
TGCTTCATTTTATCCACCTCCAGGTGATTTGCATCCCACTACTCATAATTTTTGGGCATG
TAATAGTGTCATTAACCAAAACGGTGGATTCGGTCCACTTGAATGCAATAATGCCGGTAT
CTATGCAATTTTCTCGACCGCCAATGAGATCATCGACGGTAATGAATACATGCTTCCACT
ATTTTATATTGGAAGATCCACTATAGATGTTCGAGATAGAATTGCTGATCACAGTAGACG
AAACCATGTTGATAATGATTTCATTGTGTGTTATATGCGTTTCCCAGCATTGGATGATTA
TGGTTACAGTAACAAAGTAACACCCGTTGAACAAGCTCTCCTTCACCAATTCAAAACTCA
ATTCAACTCATGGGATAACCCTCGGTTTTGATCCACAGTATGATACTGCTTATCCAGATG
AAAATGGTTTGGGATGGGATATCCTTGCATCTTTTTATAATATGGATATCAATGCTCCAT
CTTTTAATATTGAAAAAGAGCCAGGCTTTGTATGGAATGGTCAAACTAATGGACATACTG
GAACGGTTTCGTCCAATCATCATTAAAAGCTGATCAATCTGAAATATT----------

>SFJ246Z.Seq
----------AATCAAAATCAAAATCAAAATCAAAATCAAAATCAAAATCAAAATCAAAA
TCAAAATCAAAATCAAAATCAAAATCATAATCAGAATCAAAATCCACATTCAAACTTTCA
GGTTTCTAATGATCAATTAATTGCTATAGATGTTGGTATTGCAGGTGGTGCTATCGTTGC
AGGCGCTGGTGCAGCAGCAGCCGGTGCAGCAGCCGGTGCTGAGGGTGGTGCCGCAGGAGT
TGCTTCCAGAGCTGGTGGTTATATTTCTCGTACTGCTAGTCGTGTTGGTAACTCTATACG
TAGCAGAGCTACTCGTTATGCTAATCAAGGTTACAATTCCATGAGAAATGGTGCACAAAG
AGCTGGCAACGGCGCACGTAATTATGCTAATGAAGGTTACAATTCCGTGAGAGATGGTGC
ACAAAGAGCTGGCAACGGCGCACGTAATTATGCTCAACAAGGTTATCAAGCATGGAGAGA
AGGTGTCAATGAGATTGGTGATGATATCGCCAATACTGCACATGATGTAGGTGATGGTTT
CGCCAATACTGCACGTGAAGTAGGTGATGGAATTAGAATCACTGCAGAGGAGGGATATGA
ACTCATTAAAGATGGAGCTGAAGAAACTTGGGTGAAGAAATATTAAAGGTTATCCTAATT
AAAATTAAAAAAGCACAACAAAGAA

>SFJ246P.Seq
TTATATTGTAATAATTTTTTGTAGTAGTATCCAATTTTCTTTTGGATACGAAAAGGCGAT
TGCTTCATTTTATCCACCTCCAGGTGATTTGCATCCCACTACTCATAATTTTTGGGCATG
TAATAGTGTCATTAACCAAAACGGTGGATTCGGTCCACTTGAATGCAATAATGCCGGTAT
CTATGCAATTTTCTCGACCGCCAATGAGATCATCGACGGTAATGAATACATGCTTCCACT
ATTTTATATTGGAAGATCCACTATAGATGTTCGAGATAGAATTGCTGATCACAGTAGACG
AAACCATGTTGATAATGATTTCATTGTGTGTTATATGCGTTTCCCAGCATTGGATGATTA
TGGTTACAGTAACAAAGTAACACCCGTTGAACAAGCTCTCCTTCACCAATTCAAAACTCA
ATTCAACTCATGGGATAACCCTCGGTTTTGATCCACAGTATGATACTGCTTATCCAGATG
AAAATGGTTTGGGATGGGATATCCTTGCATCTTTTTATAATATGGATATCAATGCTCCAT
CTTTTAATATTGAAAAAGAGCCAGGCTTTGTATGGAATGGTCAAACTAATGGACATACTG
GAACGGTTTCGTCCAATCATCATTAAAAGCTGATCAATCTGAAATATT----------AA
TCAAAATCAAAATCAAAATCAAAATCAAAATCAAAATCAAAATCAAAATCAAAATCAAAA
TCAAAATCAAAATCATAATCAGAATCAAAATCCACATTCAAACTTTCAGGTTTCTAATGA
TCAATTAATTGCTATAGATGTTGGTATTGCAGGTGGTGCTATCGTTGCAGGCGCTGGTGC
AGCAGCAGCCGGTGCAGCAGCCGGTGCTGAGGGTGGTGCCGCAGGAGTTGCTTCCAGAGC
TGGTGGTTATATTTCTCGTACTGCTAGTCGTGTTGGTAACTCTATACGTAGCAGAGCTAC
TCGTTATGCTAATCAAGGTTACAATTCCATGAGAAATGGTGCACAAAGAGCTGGCAACGG
CGCACGTAATTATGCTAATGAAGGTTACAATTCCGTGAGAGATGGTGCACAAAGAGCTGG
CAACGGCGCACGTAATTATGCTCAACAAGGTTATCAAGCATGGAGAGAAGGTGTCAATGA
GATTGGTGATGATATCGCCAATACTGCACATGATGTAGGTGATGGTTTCGCCAATACTGC
ACGTGAAGTAGGTGATGGAATTAGAATCACTGCAGAGGAGGGATATGAACTCATTAAAGA
TGGAGCTGAAGAAACTTGGGTGAAGAAATATTAAAGGTTATCCTAATTAAAATTAAAAAA
GCACAACAAAGAA