>SFJ238 (SFJ238Q) /CSM/SF/SFJ2-B/SFJ238Q.Seq.d/
XXXXXXXXXXCACCACCGGCTACCACTACTACCACCACCACTACCACTAAAGATGCTCCA
ATTAAATTACCAAAACATTATGGTGTTTTAAATTCAAATTTTGATAAGAATGAAGATTGG
TGTAATTTTATTGATGATGATCAACCAAAGACTGAAAGTTTTACAAAACCAATGTTTGGA
AGTCGTTATAAGGCATCTGGCAAGAAGTCAACTTACAAGATACCTGTATTGGGTTTAGTT
ATTGGTAATCAACATATTGGTTTCAAATCATTCCAAAAGACATTAATTTTGAAAACTTTA
AAAGATGAAACTAGATTATATTTCAATGATTATCGTTTGGATACTCTTTATAGTATACCT
TTCAATTCATTATTCATTGCAACTTTCTCAATTGGAAATGTCGACTCTTTTAATGTTTTA
ACTGATAAAATTGATAAACTTCAAAAACAATTCACAAATACTCCAATCTATTTATTAGGT
TTACAATCTGATATTAAAAATACAACCACTGCATCAGCTAGTACAAATGAATCAACAACA
ACAACAACAACAACTAATGAATCAACAACTGCCACAAATAATACTCCAGTTGATAAAACT

---PPATTTTTTTTTKDAPIKLPKHYGVLNSNFDKNEDWCNFIDDDQPKTESFTKPMFGS
RYKASGKKSTYKIPVLGLVIGNQHIGFKSFQKTLILKTLKDETRLYFNDYRLDTLYSIPF
NSLFIATFSIGNVDSFNVLTDKIDKLQKQFTNTPIYLLGLQSDIKNTTTASASTNESTTT
TTTTNESTTATNNTPVDKT

Frame A:
---ttgyhyyhhhyh*rcsn*itktlwcfkfkf**e*rlv*fy***stkd*kfyktnvwk
sl*giwqevnlqdtcigfsyw*stywfqiipkdinfenfkr*n*iifq*lsfgysl*ytf
qfiihcnflnwkcrlf*cfn**n**tsktihkysnlfirfti*y*kynhcis*yk*innn
nnnn**innchk*yss**n


Frame B:
---PPATTTTTTTTTKDAPIKLPKHYGVLNSNFDKNEDWCNFIDDDQPKTESFTKPMFGS
RYKASGKKSTYKIPVLGLVIGNQHIGFKSFQKTLILKTLKDETRLYFNDYRLDTLYSIPF
NSLFIATFSIGNVDSFNVLTDKIDKLQKQFTNTPIYLLGLQSDIKNTTTASASTNESTTT
TTTTNESTTATNNTPVDKT


Frame C:
---hrlpllppplplkmlqlnyqnimvf*iqilirmkigvillmminqrlkvlqnqclev
virhlarsqltrylywv*llvinilvsnhskrh*f*kl*kmkldyismiivwilfivyls
ihyslqlsqlemstllmf*liklinfknnsqilqsiy*vynlilkiqplhqlvqmnqqqq
qqqlmnqqlpqiilqlik

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SFJ238 (SFJ238Q) /CSM/SF/SFJ2-B/SFJ238Q.Seq.d/                        957   0.0
AHD640 (AHD640Q) /CSM/AH/AHD6-B/AHD640Q.Seq.d/                        957   0.0
SSG467 (SSG467Q) /CSM/SS/SSG4-C/SSG467Q.Seq.d/                        898   0.0
AFH476 (AFH476Q) /CSM/AF/AFH4-D/AFH476Q.Seq.d/                        771   0.0
SHG547 (SHG547Q) /CSM/SH/SHG5-B/SHG547Q.Seq.d/                        186   3e-46
AFD861 (AFD861Q) /CSM/AF/AFD8-C/AFD861Q.Seq.d/                         42   0.010
VHN834 (VHN834Q) /CSM/VH/VHN8-B/VHN834Q.Seq.d/                         40   0.038
VHL294 (VHL294Q) /CSM/VH/VHL2-D/VHL294Q.Seq.d/                         40   0.038
VHD894 (VHD894Q) /CSM/VH/VHD8-D/VHD894Q.Seq.d/                         40   0.038
VHD484 (VHD484Q) /CSM/VH/VHD4-D/VHD484Q.Seq.d/                         40   0.038

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.   957   0.0    13
AC027050|AC027050.1 Homo sapiens chromosome 6 clone RP11-165J10 map 6, LOW-PASS SEQUENCE SAMPLING.    38   0.002  4
AC091076|AC091076.7 Homo sapiens chromosome 8, clone RP11-53M11, complete sequence.    36   0.013  9
AC006624|AC006624.2 Caenorhabditis elegans cosmid C53D5, complete sequence.    32   0.015  7
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    36   0.019  10
AP004170|AP004170.1 Mycoplasma penetrans genomic DNA, complete sequence, section 1/5.    32   0.027  12
AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    34   0.068  11
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    32   0.13   11
AY198133|AY198133.1 Spiroplasma kunkelii strain CR2-3x partial genome sequence.    32   0.13   8
AC027671|AC027671.9 Homo sapiens chromosome 10 clone RP11-183F21, complete sequence.    34   0.15   7

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116305_104(AC116305|pid:none) Dictyostelium discoideum chromos...   308   6e-83
CP000903_4452(CP000903|pid:none) Bacillus weihenstephanensis KBA...    36   0.90
CR940352_224(CR940352|pid:none) Theileria annulata strain Ankara...    35   2.0
CP000901_1027(CP000901|pid:none) Yersinia pestis Angola, complet...    34   3.4
BC167318_1(BC167318|pid:none) Xenopus tropicalis ras homolog gen...    33   4.5
BC078037_1(BC078037|pid:none) Xenopus laevis hypothetical LOC503...    33   4.5
BC077840_1(BC077840|pid:none) Xenopus laevis hypothetical LOC503...    33   4.5
(P17081) RecName: Full=Rho-related GTP-binding protein RhoQ; Alt...    33   5.9
CP000127_1727(CP000127|pid:none) Nitrosococcus oceani ATCC 19707...    33   5.9
(Q8R527) RecName: Full=Rho-related GTP-binding protein RhoQ; Alt...    33   5.9

 psg: 0.86  gvh: 0.18  alm: 0.40  top: 0.63  tms: 0.00  mit: 0.24  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: cytoplasmic
	 28.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: plasma membrane

>> prediction for SFJ238 is cyt

>SFJ238Z.Seq
----------CACCACCGGCTACCACTACTACCACCACCACTACCACTAAAGATGCTCCA
ATTAAATTACCAAAACATTATGGTGTTTTAAATTCAAATTTTGATAAGAATGAAGATTGG
TGTAATTTTATTGATGATGATCAACCAAAGACTGAAAGTTTTACAAAACCAATGTTTGGA
AGTCGTTATAAGGCATCTGGCAAGAAGTCAACTTACAAGATACCTGTATTGGGTTTAGTT
ATTGGTAATCAACATATTGGTTTCAAATCATTCCAAAAGACATTAATTTTGAAAACTTTA
AAAGATGAAACTAGATTATATTTCAATGATTATCGTTTGGATACTCTTTATAGTATACCT
TTCAATTCATTATTCATTGCAACTTTCTCAATTGGAAATGTCGACTCTTTTAATGTTTTA
ACTGATAAAATTGATAAACTTCAAAAACAATTCACAAATACTCCAATCTATTTATTAGGT
TTACAATCTGATATTAAAAATACAACCACTGCATCAGCTAGTACAAATGAATCAACAACA
ACAACAACAACAACTAATGAATCAACAACTGCCACAAATAATACTCCAGTTGATAAAACT